CircRNA Information

General Information
circRNA Basic Information
CircID chr19:2039101|2039226
Strand +
CircType exon
Host Gene ENSG00000099875.13;
Algorism CIRI2;
Sequence AGCGTTTGCCATCTTGCAGAGCTGGGGAGGGGCACAGGACCCTGCCCTCGTGTTCCCTCCCAGCCCGCAGTATTTCAGGGACAGGCTCTTCCCCTCTATCCCTCACCCTGAGAGCACCCCTGGTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:2039101|2039226 hsa-miR-200b-5p 0 0 1
chr19:2039101|2039226 hsa-miR-200b-3p 0 0 1
chr19:2039101|2039226 hsa-miR-200c-5p 0 0 1
chr19:2039101|2039226 hsa-miR-200c-3p 0 0 1
chr19:2039101|2039226 hsa-miR-429 0 0 1
chr19:2039101|2039226 hsa-miR-1266-5p 0 0 1
chr19:2039101|2039226 hsa-miR-1266-3p 0 0 1
chr19:2039101|2039226 hsa-miR-1207-5p 0 0 1
chr19:2039101|2039226 hsa-miR-342-5p 0 1 1
chr19:2039101|2039226 hsa-miR-125a-5p 0 0 1
chr19:2039101|2039226 hsa-miR-125b 0 0 1
chr19:2039101|2039226 hsa-miR-762 0 1 0
chr19:2039101|2039226 hsa-miR-1275 1 0 0
chr19:2039101|2039226 hsa-miR-3907 0 1 0
chr19:2039101|2039226 hsa-miR-4498 0 1 0
chr19:2039101|2039226 hsa-miR-4505 0 1 0
chr19:2039101|2039226 hsa-miR-4525 1 0 0
chr19:2039101|2039226 hsa-miR-4651 1 0 0
chr19:2039101|2039226 hsa-miR-4656 1 0 0
chr19:2039101|2039226 hsa-miR-4710 0 1 0
chr19:2039101|2039226 hsa-miR-4734 1 1 0
chr19:2039101|2039226 hsa-miR-4739 1 0 0
chr19:2039101|2039226 hsa-miR-4767 1 0 0
chr19:2039101|2039226 hsa-miR-5194 1 0 0
chr19:2039101|2039226 hsa-miR-6077 0 1 0
chr19:2039101|2039226 hsa-miR-6127 1 0 0
chr19:2039101|2039226 hsa-miR-6133 1 0 0
chr19:2039101|2039226 hsa-miR-8085 1 0 0
chr19:2039101|2039226 hsa-miR-12119 1 0 0
chr19:2039101|2039226 hsa-miR-12128 1 0 0
chr19:2039101|2039226 hsa-miR-6734-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6747-5p 1 0 0
chr19:2039101|2039226 hsa-miR-3192-5p 0 1 0
chr19:2039101|2039226 hsa-miR-6873-5p 0 1 0
chr19:2039101|2039226 hsa-miR-6880-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6741-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6721-5p 0 1 0
chr19:2039101|2039226 hsa-miR-197-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6783-5p 0 1 0
chr19:2039101|2039226 hsa-miR-3180-3p 1 0 0
chr19:2039101|2039226 hsa-miR-6796-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6798-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6782-5p 1 1 0
chr19:2039101|2039226 hsa-miR-345-3p 0 1 0
chr19:2039101|2039226 hsa-miR-6786-5p 1 0 0
chr19:2039101|2039226 hsa-miR-7109-5p 1 0 0
chr19:2039101|2039226 hsa-miR-1226-5p 1 0 0
chr19:2039101|2039226 hsa-miR-3944-3p 1 0 0
chr19:2039101|2039226 hsa-miR-6784-5p 1 0 0
chr19:2039101|2039226 hsa-miR-3127-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6749-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6834-5p 1 0 0
chr19:2039101|2039226 hsa-miR-149-3p 1 1 0
chr19:2039101|2039226 hsa-miR-202-3p 1 0 0
chr19:2039101|2039226 hsa-miR-2276-3p 0 1 0
chr19:2039101|2039226 hsa-miR-6769a-3p 0 1 0
chr19:2039101|2039226 hsa-miR-5010-5p 1 0 0
chr19:2039101|2039226 hsa-miR-423-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6889-3p 0 1 0
chr19:2039101|2039226 hsa-miR-1914-5p 0 1 0
chr19:2039101|2039226 hsa-miR-6748-3p 0 1 0
chr19:2039101|2039226 hsa-miR-670-5p 0 1 0
chr19:2039101|2039226 hsa-miR-4763-3p 0 1 0
chr19:2039101|2039226 hsa-miR-6778-5p 0 1 0
chr19:2039101|2039226 hsa-miR-6870-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6743-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6752-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6756-5p 1 1 0
chr19:2039101|2039226 hsa-miR-6803-5p 1 0 0
chr19:2039101|2039226 hsa-miR-7110-5p 1 0 0
chr19:2039101|2039226 hsa-miR-1249-5p 0 1 0
chr19:2039101|2039226 hsa-miR-6751-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6780a-5p 0 1 0
chr19:2039101|2039226 hsa-miR-6797-5p 1 1 0
chr19:2039101|2039226 hsa-miR-6875-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6879-5p 0 1 0
chr19:2039101|2039226 hsa-miR-3620-5p 1 0 0
chr19:2039101|2039226 hsa-miR-4728-5p 0 1 0
chr19:2039101|2039226 hsa-miR-5196-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6780b-5p 1 1 0
chr19:2039101|2039226 hsa-miR-4632-5p 0 1 0
chr19:2039101|2039226 hsa-miR-4649-5p 1 0 0
chr19:2039101|2039226 hsa-miR-4725-3p 0 1 0
chr19:2039101|2039226 hsa-miR-6738-5p 1 1 0
chr19:2039101|2039226 hsa-miR-6848-5p 1 0 0
chr19:2039101|2039226 hsa-miR-939-5p 1 0 0
chr19:2039101|2039226 hsa-miR-7843-5p 0 1 0
chr19:2039101|2039226 hsa-miR-1914-3p 1 0 0
chr19:2039101|2039226 hsa-miR-6736-5p 1 0 0
chr19:2039101|2039226 hsa-miR-6750-5p 0 1 0
chr19:2039101|2039226 hsa-miR-6529-3p 0 1 0
chr19:2039101|2039226 hsa-miR-10394-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:2039101|2039226
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MGRGTGPCPRVPSQPAVFQGQALPLYPSP
Nucleotide Sequence CTGGGGAGGGGCACAGGACCCTGCCCTCGTGTTCCCTCCCAGCCCGCAGTATTTCAGGGACAGGCTCTTCCCCTCTATCCCTCACCCTGA
CircID chr19:2039101|2039226
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MQSWGGAQDPALVFPPSPQYFRDRLFPSIPHPESTPG
Nucleotide Sequence TTGCAGAGCTGGGGAGGGGCACAGGACCCTGCCCTCGTGTTCCCTCCCAGCCCGCAGTATTTCAGGGACAGGCTCTTCCCCTCTATCCCTCACCCTGAGAGCACCCCTGGT
CircID chr19:2039101|2039226
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MPSCRAGEGHRTLPSCSLPARSISGTGSSPLSLTLRAPLV
Nucleotide Sequence TTGCCATCTTGCAGAGCTGGGGAGGGGCACAGGACCCTGCCCTCGTGTTCCCTCCCAGCCCGCAGTATTTCAGGGACAGGCTCTTCCCCTCTATCCCTCACCCTGAGAGCACCCCTGGTG
CircID chr19:2039101|2039226
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MSLKYCGLGGNTRAGSCAPPQLCKMANA
Nucleotide Sequence CTGTCCCTGAAATACTGCGGGCTGGGAGGGAACACGAGGGCAGGGTCCTGTGCCCCTCCCCAGCTCTGCAAGATGGCAAACGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab