CircRNA Information

General Information
circRNA Basic Information
CircID chr19:2046226|2046442
Strand +
CircType exon
Host Gene ENSG00000099875.13;
Algorism CIRI2;
Sequence ATCCCGGACGCCAAGAAGAGGGGCAAGAAGAAGAAGCGCGGCCGGGCCACCGACAGCTTCTCGGGCAGGTTTGAAGGTGAGCGGGGATGGCGGGCATTGGGGGAGCCGGGAGCGGGGAAAAGCCAGGGTCCCTCTCACGCCCGCCCCGCTGCCCGGCAGACGTCTACCAGCTGCAGGAAGATGTGCTGGGGGAGGGCGCTCATGCCCGAGTGCAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:2046226|2046442 hsa-miR-379-5p 0 0 1
chr19:2046226|2046442 hsa-miR-379-3p 0 0 1
chr19:2046226|2046442 hsa-miR-346 0 0 1
chr19:2046226|2046442 hsa-miR-504-5p 0 0 1
chr19:2046226|2046442 hsa-miR-504-3p 0 0 1
chr19:2046226|2046442 hsa-miR-1301-5p 0 0 1
chr19:2046226|2046442 hsa-miR-1301-3p 0 0 1
chr19:2046226|2046442 hsa-miR-744-5p 0 0 1
chr19:2046226|2046442 hsa-miR-744-3p 0 0 1
chr19:2046226|2046442 hsa-miR-663b 1 1 1
chr19:2046226|2046442 hsa-miR-885-3p 0 1 1
chr19:2046226|2046442 hsa-miR-1184 0 1 1
chr19:2046226|2046442 hsa-miR-339-3p 0 0 1
chr19:2046226|2046442 hsa-miR-361-3p 0 1 1
chr19:2046226|2046442 hsa-miR-1207-3p 0 0 1
chr19:2046226|2046442 hsa-miR-1268 0 0 1
chr19:2046226|2046442 hsa-miR-365 0 0 1
chr19:2046226|2046442 hsa-miR-572 1 0 0
chr19:2046226|2046442 hsa-miR-1181 1 0 0
chr19:2046226|2046442 hsa-miR-1538 1 1 0
chr19:2046226|2046442 hsa-miR-2861 1 0 0
chr19:2046226|2046442 hsa-miR-3147 0 1 0
chr19:2046226|2046442 hsa-miR-3615 0 1 0
chr19:2046226|2046442 hsa-miR-4767 1 0 0
chr19:2046226|2046442 hsa-miR-7703 1 1 0
chr19:2046226|2046442 hsa-miR-103a-2-5p 0 1 0
chr19:2046226|2046442 hsa-miR-323a-5p 1 1 0
chr19:2046226|2046442 hsa-miR-4665-3p 1 0 0
chr19:2046226|2046442 hsa-miR-6875-3p 1 0 0
chr19:2046226|2046442 hsa-miR-6840-5p 1 0 0
chr19:2046226|2046442 hsa-miR-6727-5p 0 1 0
chr19:2046226|2046442 hsa-miR-3180-3p 0 1 0
chr19:2046226|2046442 hsa-miR-4725-5p 0 1 0
chr19:2046226|2046442 hsa-miR-4655-3p 1 0 0
chr19:2046226|2046442 hsa-miR-6715b-3p 0 1 0
chr19:2046226|2046442 hsa-miR-6774-3p 1 0 0
chr19:2046226|2046442 hsa-miR-6786-5p 1 0 0
chr19:2046226|2046442 hsa-miR-1908-3p 1 0 0
chr19:2046226|2046442 hsa-miR-6757-3p 1 0 0
chr19:2046226|2046442 hsa-miR-7113-3p 1 0 0
chr19:2046226|2046442 hsa-miR-3679-3p 0 1 0
chr19:2046226|2046442 hsa-miR-6769a-3p 1 0 0
chr19:2046226|2046442 hsa-miR-4707-5p 1 0 0
chr19:2046226|2046442 hsa-miR-7106-3p 0 1 0
chr19:2046226|2046442 hsa-miR-4687-5p 0 1 0
chr19:2046226|2046442 hsa-miR-6813-3p 1 0 0
chr19:2046226|2046442 hsa-miR-328-3p 1 0 0
chr19:2046226|2046442 hsa-miR-1249-3p 0 1 0
chr19:2046226|2046442 hsa-miR-6729-3p 0 1 0
chr19:2046226|2046442 hsa-miR-4740-3p 0 1 0
chr19:2046226|2046442 hsa-miR-6774-5p 0 1 0
chr19:2046226|2046442 hsa-miR-6875-5p 0 1 0
chr19:2046226|2046442 hsa-miR-4632-5p 0 1 0
chr19:2046226|2046442 hsa-miR-4745-3p 1 1 0
chr19:2046226|2046442 hsa-miR-10398-5p 0 1 0
chr19:2046226|2046442 hsa-miR-6810-3p 1 0 0
chr19:2046226|2046442 hsa-miR-103a-1-5p 0 1 0
chr19:2046226|2046442 hsa-miR-4769-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:2046226|2046442
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MGEPGAGKSQGPSHARPAARQTSTSCRKMCWGRALMPECR
Nucleotide Sequence TTGGGGGAGCCGGGAGCGGGGAAAAGCCAGGGTCCCTCTCACGCCCGCCCCGCTGCCCGGCAGACGTCTACCAGCTGCAGGAAGATGTGCTGGGGGAGGGCGCTCATGCCCGAGTGCAGA
CircID chr19:2046226|2046442
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MKVSGDGGHWGSRERGKARVPLTPAPLPGRRLPAAGRCAGGGRSCPSAD
Nucleotide Sequence TTGAAGGTGAGCGGGGATGGCGGGCATTGGGGGAGCCGGGAGCGGGGAAAAGCCAGGGTCCCTCTCACGCCCGCCCCGCTGCCCGGCAGACGTCTACCAGCTGCAGGAAGATGTGCTGGGGGAGGGCGCTCATGCCCGAGTGCAGAC
CircID chr19:2046226|2046442
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MAGIGGAGSGEKPGSLSRPPRCPADVYQLQEDVLGEGAHARVQ
Nucleotide Sequence ATGGCGGGCATTGGGGGAGCCGGGAGCGGGGAAAAGCCAGGGTCCCTCTCACGCCCGCCCCGCTGCCCGGCAGACGTCTACCAGCTGCAGGAAGATGTGCTGGGGGAGGGCGCTCATGCCCGAGTGCAG
CircID chr19:2046226|2046442
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MPAIPAHLQTCPRSCRWPGRASSSCPSSWRPG
Nucleotide Sequence ATGCCCGCCATCCCCGCTCACCTTCAAACCTGCCCGAGAAGCTGTCGGTGGCCCGGCCGCGCTTCTTCTTCTTGCCCCTCTTCTTGGCGTCCGGGA
CircID chr19:2046226|2046442
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MPGSGAGVRGTLAFPRSRLPQCPPSPLTFKPAREAVGGPAALLLLAPLLGVRD
Nucleotide Sequence CTGCCGGGCAGCGGGGCGGGCGTGAGAGGGACCCTGGCTTTTCCCCGCTCCCGGCTCCCCCAATGCCCGCCATCCCCGCTCACCTTCAAACCTGCCCGAGAAGCTGTCGGTGGCCCGGCCGCGCTTCTTCTTCTTGCCCCTCTTCTTGGCGTCCGGGAT
CircID chr19:2046226|2046442
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence LHSGMSALPQHIFLQLVDVCRAAGRA
Nucleotide Sequence CTGCACTCGGGCATGAGCGCCCTCCCCCAGCACATCTTCCTGCAGCTGGTAGACGTCTGCCGGGCAGCGGGGCGGGCGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab