CircRNA Information

General Information
circRNA Basic Information
CircID chr19:2244565|2244777
Strand -
CircType exon
Host Gene ENSG00000104897.8;
Algorism CIRI2;
Sequence CACCTGGGCTCCTATGAATGCAAACTCTGCCTGACACTTCACAACAATGAGGTGCGGCCTCTGCCTGGCTCCGGGCGGCTCGCGGCGGGCTGAGTGGCTGACGTCAGGGGGACCTGCCTGTGTCTGTCCGCCCGGCCTCGAGTCATGCGTGTTTCCTTTCCACTCCAGGGGAGCTACCTGGCACATACGCAGGGGAAGAAGCACCAGACCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:2244565|2244777 hsa-miR-33a-5p 0 0 1
chr19:2244565|2244777 hsa-miR-33a-3p 0 0 1
chr19:2244565|2244777 hsa-miR-122-5p 0 0 1
chr19:2244565|2244777 hsa-miR-122-3p 0 0 1
chr19:2244565|2244777 hsa-miR-376b-5p 0 0 1
chr19:2244565|2244777 hsa-miR-376b-3p 0 0 1
chr19:2244565|2244777 hsa-miR-573 0 0 1
chr19:2244565|2244777 hsa-miR-33b-5p 0 0 1
chr19:2244565|2244777 hsa-miR-33b-3p 0 0 1
chr19:2244565|2244777 hsa-miR-708-5p 0 0 1
chr19:2244565|2244777 hsa-miR-708-3p 0 0 1
chr19:2244565|2244777 hsa-miR-940 1 1 1
chr19:2244565|2244777 hsa-miR-1227-5p 0 0 1
chr19:2244565|2244777 hsa-miR-1227-3p 0 0 1
chr19:2244565|2244777 hsa-miR-1203 0 1 1
chr19:2244565|2244777 hsa-miR-512-5p 0 1 1
chr19:2244565|2244777 hsa-miR-28-5p 0 0 1
chr19:2244565|2244777 hsa-miR-331-3p 0 0 1
chr19:2244565|2244777 hsa-miR-455-5p 0 0 1
chr19:2244565|2244777 hsa-miR-376a 0 0 1
chr19:2244565|2244777 hsa-miR-663a 1 0 0
chr19:2244565|2244777 hsa-miR-3193 0 1 0
chr19:2244565|2244777 hsa-miR-4308 0 1 0
chr19:2244565|2244777 hsa-miR-4269 0 1 0
chr19:2244565|2244777 hsa-miR-3937 1 0 0
chr19:2244565|2244777 hsa-miR-4514 0 1 0
chr19:2244565|2244777 hsa-miR-3978 0 1 0
chr19:2244565|2244777 hsa-miR-4651 1 0 0
chr19:2244565|2244777 hsa-miR-4656 1 0 0
chr19:2244565|2244777 hsa-miR-4673 0 1 0
chr19:2244565|2244777 hsa-miR-4692 0 1 0
chr19:2244565|2244777 hsa-miR-4736 0 1 0
chr19:2244565|2244777 hsa-miR-6076 0 1 0
chr19:2244565|2244777 hsa-miR-668-3p 0 1 0
chr19:2244565|2244777 hsa-miR-3622a-5p 1 0 0
chr19:2244565|2244777 hsa-miR-6089 1 1 0
chr19:2244565|2244777 hsa-miR-505-5p 0 1 0
chr19:2244565|2244777 hsa-miR-6798-5p 1 0 0
chr19:2244565|2244777 hsa-miR-2467-3p 1 0 0
chr19:2244565|2244777 hsa-miR-4707-3p 0 1 0
chr19:2244565|2244777 hsa-miR-7112-5p 1 0 0
chr19:2244565|2244777 hsa-miR-4732-3p 0 1 0
chr19:2244565|2244777 hsa-miR-4778-3p 0 1 0
chr19:2244565|2244777 hsa-miR-4520-3p 0 1 0
chr19:2244565|2244777 hsa-miR-4763-3p 1 0 0
chr19:2244565|2244777 hsa-miR-6812-5p 0 1 0
chr19:2244565|2244777 hsa-miR-6816-5p 1 0 0
chr19:2244565|2244777 hsa-miR-6735-5p 1 0 0
chr19:2244565|2244777 hsa-miR-6831-5p 1 0 0
chr19:2244565|2244777 hsa-miR-6845-5p 0 1 0
chr19:2244565|2244777 hsa-miR-6511a-5p 1 1 0
chr19:2244565|2244777 hsa-miR-10398-3p 0 1 0
chr19:2244565|2244777 hsa-miR-6791-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:2244565|2244777
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MGSYECKLCLTLHNNEVRPLPGSGRLAAG
Nucleotide Sequence CTGGGCTCCTATGAATGCAAACTCTGCCTGACACTTCACAACAATGAGGTGCGGCCTCTGCCTGGCTCCGGGCGGCTCGCGGCGGGCTGA
CircID chr19:2244565|2244777
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MCLSARPRVMRVSFPLQGSYLAHTQGKKHQTN
Nucleotide Sequence CTGTGTCTGTCCGCCCGGCCTCGAGTCATGCGTGTTTCCTTTCCACTCCAGGGGAGCTACCTGGCACATACGCAGGGGAAGAAGCACCAGACCAAC
CircID chr19:2244565|2244777
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence MRCGLCLAPGGSRRAEWLTSGGPACVCPPGLESCVFPFHSRGATWHIRRGRSTRP
Nucleotide Sequence ATGAGGTGCGGCCTCTGCCTGGCTCCGGGCGGCTCGCGGCGGGCTGAGTGGCTGACGTCAGGGGGACCTGCCTGTGTCTGTCCGCCCGGCCTCGAGTCATGCGTGTTTCCTTTCCACTCCAGGGGAGCTACCTGGCACATACGCAGGGGAAGAAGCACCAGACCA
CircID chr19:2244565|2244777
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MPVSVRPASSHACFLSTPGELPGTYAGEEAPDQ
Nucleotide Sequence CTGCCTGTGTCTGTCCGCCCGGCCTCGAGTCATGCGTGTTTCCTTTCCACTCCAGGGGAGCTACCTGGCACATACGCAGGGGAAGAAGCACCAGACCAA
CircID chr19:2244565|2244777
ORF Type ORF5
Protein Length 69
Nucleotide Length 207
Protein Sequence MVLLPLRMCQVAPLEWKGNTHDSRPGGQTQAGPPDVSHSARREPPGARQRPHLIVVKCQAEFAFIGAQV
Nucleotide Sequence CTGGTGCTTCTTCCCCTGCGTATGTGCCAGGTAGCTCCCCTGGAGTGGAAAGGAAACACGCATGACTCGAGGCCGGGCGGACAGACACAGGCAGGTCCCCCTGACGTCAGCCACTCAGCCCGCCGCGAGCCGCCCGGAGCCAGGCAGAGGCCGCACCTCATTGTTGTGAAGTGTCAGGCAGAGTTTGCATTCATAGGAGCCCAGGTG
CircID chr19:2244565|2244777
ORF Type ORF6
Protein Length 35
Nucleotide Length 108
Protein Sequence MTRGRADRHRQVPLTSATQPAASRPEPGRGRTSLL
Nucleotide Sequence ATGACTCGAGGCCGGGCGGACAGACACAGGCAGGTCCCCCTGACGTCAGCCACTCAGCCCGCCGCGAGCCGCCCGGAGCCAGGCAGAGGCCGCACCTCATTGTTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab