CircRNA Information

General Information
circRNA Basic Information
CircID chr19:23255554|23255709
Strand -
CircType exon
Host Gene ENSG00000269837.1;
Algorism CIRI2;
Sequence CTGGTTCAAGCGATTCTCCTGCCTCAGCCTCGTGGGTGGCTGGAACTACAGGCGCCTGCCACCACGCCCAGCTAATTTTTGTGTTTTAAGTAAGATGGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTATCCACTCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:23255554|23255709 hsa-miR-585-5p 0 0 1
chr19:23255554|23255709 hsa-miR-585-3p 0 0 1
chr19:23255554|23255709 hsa-miR-940 0 0 1
chr19:23255554|23255709 hsa-miR-1827 0 1 1
chr19:23255554|23255709 hsa-miR-485-5p 0 1 1
chr19:23255554|23255709 hsa-miR-566 0 0 1
chr19:23255554|23255709 hsa-miR-1207-5p 1 0 1
chr19:23255554|23255709 hsa-miR-1268 0 0 1
chr19:23255554|23255709 hsa-miR-665 1 1 0
chr19:23255554|23255709 hsa-miR-1268a 1 1 0
chr19:23255554|23255709 hsa-miR-2861 1 0 0
chr19:23255554|23255709 hsa-miR-544b 0 1 0
chr19:23255554|23255709 hsa-miR-3911 1 0 0
chr19:23255554|23255709 hsa-miR-3929 0 1 0
chr19:23255554|23255709 hsa-miR-3935 1 0 0
chr19:23255554|23255709 hsa-miR-1268b 1 1 0
chr19:23255554|23255709 hsa-miR-4486 0 1 0
chr19:23255554|23255709 hsa-miR-4508 1 0 0
chr19:23255554|23255709 hsa-miR-4656 1 1 0
chr19:23255554|23255709 hsa-miR-4739 1 0 0
chr19:23255554|23255709 hsa-miR-4767 1 0 0
chr19:23255554|23255709 hsa-miR-5787 1 0 0
chr19:23255554|23255709 hsa-miR-6085 1 0 0
chr19:23255554|23255709 hsa-miR-6086 1 0 0
chr19:23255554|23255709 hsa-miR-6745 1 0 0
chr19:23255554|23255709 hsa-miR-8060 1 0 0
chr19:23255554|23255709 hsa-miR-8089 1 0 0
chr19:23255554|23255709 hsa-miR-12115 1 0 0
chr19:23255554|23255709 hsa-miR-6734-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6765-5p 1 0 0
chr19:23255554|23255709 hsa-miR-671-5p 1 0 0
chr19:23255554|23255709 hsa-miR-4786-5p 0 1 0
chr19:23255554|23255709 hsa-miR-4722-5p 1 1 0
chr19:23255554|23255709 hsa-miR-7160-5p 1 1 0
chr19:23255554|23255709 hsa-miR-3189-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6849-3p 0 1 0
chr19:23255554|23255709 hsa-miR-6793-5p 1 0 0
chr19:23255554|23255709 hsa-miR-23a-5p 1 0 0
chr19:23255554|23255709 hsa-miR-2467-3p 1 0 0
chr19:23255554|23255709 hsa-miR-6821-5p 1 0 0
chr19:23255554|23255709 hsa-miR-7855-5p 1 0 0
chr19:23255554|23255709 hsa-miR-4786-3p 1 0 0
chr19:23255554|23255709 hsa-miR-4691-3p 0 1 0
chr19:23255554|23255709 hsa-miR-1228-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6749-5p 1 0 0
chr19:23255554|23255709 hsa-miR-7843-3p 0 1 0
chr19:23255554|23255709 hsa-let-7e-5p 1 0 0
chr19:23255554|23255709 hsa-miR-584-3p 0 1 0
chr19:23255554|23255709 hsa-miR-20b-3p 0 1 0
chr19:23255554|23255709 hsa-miR-4763-3p 1 0 0
chr19:23255554|23255709 hsa-miR-6787-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6743-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6756-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6803-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6813-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6722-3p 1 0 0
chr19:23255554|23255709 hsa-miR-6751-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6774-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6808-5p 1 1 0
chr19:23255554|23255709 hsa-miR-4649-5p 1 0 0
chr19:23255554|23255709 hsa-miR-4745-5p 1 0 0
chr19:23255554|23255709 hsa-miR-6848-5p 1 0 0
chr19:23255554|23255709 hsa-miR-1238-5p 1 0 0
chr19:23255554|23255709 hsa-miR-4758-5p 1 0 0
chr19:23255554|23255709 hsa-miR-1285-3p 1 0 0
chr19:23255554|23255709 hsa-miR-6849-5p 0 1 0
chr19:23255554|23255709 hsa-miR-6884-5p 1 1 0
chr19:23255554|23255709 hsa-miR-6771-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:23255554|23255709
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MPPRPANFCVLSKMGVSPCWPGWSRTPDLRYPL
Nucleotide Sequence CTGCCACCACGCCCAGCTAATTTTTGTGTTTTAAGTAAGATGGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTATCCACTC
CircID chr19:23255554|23255709
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MRSGVRDQPGQHGETPILLKTQKLAGRGGRRL
Nucleotide Sequence CTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCCATCTTACTTAAAACACAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab