CircRNA Information

General Information
circRNA Basic Information
CircID chr19:2434868|2435168
Strand -
CircType exon
Host Gene ENSG00000176619.9;
Algorism CIRI2;
Sequence TGGCCGCCTTGTCGTTCTGGTCAGAGCTCAGCTTGGCGCTGTCCAGCTGTGGGGAGACGGGCGGGTGAGTGCGGGCGCGGGGCGGGGCGGGGTTCCCACCGGCCGCCCCCGCCCACCCGCCTGCCGGCCACACCTTGGCCTGGTAGGTCTGCTCCAGCTCCAGCTTGTAGAGCCGCACTTGCTCGTCGTGCTGGCTCCGCAGCTCCTCCAGCGCCTGTGCCATCTTGAAGTCGTACTCCTGCTGCCGGCTGCTGTCCACCTCCACCAGGCGCCGCTCGTGCCGCCGCCGCGTCTCCCGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:2434868|2435168 hsa-miR-183-5p 0 0 1
chr19:2434868|2435168 hsa-miR-183-3p 0 0 1
chr19:2434868|2435168 hsa-miR-214-5p 0 0 1
chr19:2434868|2435168 hsa-miR-214-3p 0 0 1
chr19:2434868|2435168 hsa-miR-558 0 0 1
chr19:2434868|2435168 hsa-miR-658 0 0 1
chr19:2434868|2435168 hsa-miR-765 0 0 1
chr19:2434868|2435168 hsa-miR-541-5p 0 0 1
chr19:2434868|2435168 hsa-miR-541-3p 0 0 1
chr19:2434868|2435168 hsa-miR-708-5p 0 0 1
chr19:2434868|2435168 hsa-miR-708-3p 0 0 1
chr19:2434868|2435168 hsa-miR-663b 1 0 1
chr19:2434868|2435168 hsa-miR-1292-5p 0 0 1
chr19:2434868|2435168 hsa-miR-1292-3p 0 0 1
chr19:2434868|2435168 hsa-miR-139-3p 1 1 1
chr19:2434868|2435168 hsa-miR-1283 0 0 1
chr19:2434868|2435168 hsa-miR-654-5p 0 0 1
chr19:2434868|2435168 hsa-miR-566 0 0 1
chr19:2434868|2435168 hsa-miR-28-5p 0 0 1
chr19:2434868|2435168 hsa-miR-1207-3p 0 0 1
chr19:2434868|2435168 hsa-miR-644 0 0 1
chr19:2434868|2435168 hsa-miR-886-3p 0 0 1
chr19:2434868|2435168 hsa-miR-663 0 0 1
chr19:2434868|2435168 hsa-miR-602 1 0 0
chr19:2434868|2435168 hsa-miR-612 1 1 0
chr19:2434868|2435168 hsa-miR-663a 1 1 0
chr19:2434868|2435168 hsa-miR-761 0 1 0
chr19:2434868|2435168 hsa-miR-920 0 1 0
chr19:2434868|2435168 hsa-miR-1469 1 0 0
chr19:2434868|2435168 hsa-miR-1913 0 1 0
chr19:2434868|2435168 hsa-miR-3137 1 0 0
chr19:2434868|2435168 hsa-miR-3138 1 1 0
chr19:2434868|2435168 hsa-miR-320e 0 1 0
chr19:2434868|2435168 hsa-miR-3196 0 1 0
chr19:2434868|2435168 hsa-miR-3197 1 0 0
chr19:2434868|2435168 hsa-miR-4298 1 0 0
chr19:2434868|2435168 hsa-miR-3135b 0 1 0
chr19:2434868|2435168 hsa-miR-4467 1 1 0
chr19:2434868|2435168 hsa-miR-3960 1 1 0
chr19:2434868|2435168 hsa-miR-4634 1 0 0
chr19:2434868|2435168 hsa-miR-4647 1 1 0
chr19:2434868|2435168 hsa-miR-4651 0 1 0
chr19:2434868|2435168 hsa-miR-4663 0 1 0
chr19:2434868|2435168 hsa-miR-4672 1 0 0
chr19:2434868|2435168 hsa-miR-6081 1 1 0
chr19:2434868|2435168 hsa-miR-6125 1 0 0
chr19:2434868|2435168 hsa-miR-6860 0 1 0
chr19:2434868|2435168 hsa-miR-6863 1 0 0
chr19:2434868|2435168 hsa-miR-8072 1 1 0
chr19:2434868|2435168 hsa-miR-8073 1 0 0
chr19:2434868|2435168 hsa-miR-9898 0 1 0
chr19:2434868|2435168 hsa-miR-12115 1 1 0
chr19:2434868|2435168 hsa-miR-150-3p 1 1 0
chr19:2434868|2435168 hsa-miR-6879-3p 0 1 0
chr19:2434868|2435168 hsa-miR-4433a-3p 1 0 0
chr19:2434868|2435168 hsa-miR-6765-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6825-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6894-5p 1 0 0
chr19:2434868|2435168 hsa-miR-1972 0 1 0
chr19:2434868|2435168 hsa-miR-6822-3p 0 1 0
chr19:2434868|2435168 hsa-miR-6799-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6510-5p 1 0 0
chr19:2434868|2435168 hsa-miR-8071 1 1 0
chr19:2434868|2435168 hsa-miR-6089 1 0 0
chr19:2434868|2435168 hsa-miR-1225-3p 0 1 0
chr19:2434868|2435168 hsa-miR-6880-5p 1 1 0
chr19:2434868|2435168 hsa-miR-6746-5p 1 1 0
chr19:2434868|2435168 hsa-miR-4722-5p 1 1 0
chr19:2434868|2435168 hsa-miR-1301-3p 1 0 0
chr19:2434868|2435168 hsa-miR-6820-5p 1 0 0
chr19:2434868|2435168 hsa-miR-770-5p 0 1 0
chr19:2434868|2435168 hsa-miR-7108-5p 1 1 0
chr19:2434868|2435168 hsa-miR-6732-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6805-5p 0 1 0
chr19:2434868|2435168 hsa-miR-6798-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6770-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6874-5p 0 1 0
chr19:2434868|2435168 hsa-miR-5006-5p 0 1 0
chr19:2434868|2435168 hsa-miR-7108-3p 1 1 0
chr19:2434868|2435168 hsa-miR-1247-5p 0 1 0
chr19:2434868|2435168 hsa-miR-2277-3p 1 1 0
chr19:2434868|2435168 hsa-miR-1908-3p 1 0 0
chr19:2434868|2435168 hsa-miR-885-3p 1 0 0
chr19:2434868|2435168 hsa-miR-1908-5p 0 1 0
chr19:2434868|2435168 hsa-miR-1228-5p 1 1 0
chr19:2434868|2435168 hsa-miR-4787-5p 1 1 0
chr19:2434868|2435168 hsa-miR-4638-3p 1 1 0
chr19:2434868|2435168 hsa-miR-4776-5p 1 0 0
chr19:2434868|2435168 hsa-miR-3191-3p 1 0 0
chr19:2434868|2435168 hsa-miR-7846-3p 1 0 0
chr19:2434868|2435168 hsa-miR-1225-5p 1 0 0
chr19:2434868|2435168 hsa-miR-1911-3p 0 1 0
chr19:2434868|2435168 hsa-miR-6804-3p 1 0 0
chr19:2434868|2435168 hsa-miR-6720-3p 0 1 0
chr19:2434868|2435168 hsa-miR-4761-5p 0 1 0
chr19:2434868|2435168 hsa-miR-1199-3p 0 1 0
chr19:2434868|2435168 hsa-miR-6732-3p 0 1 0
chr19:2434868|2435168 hsa-miR-4520-3p 0 1 0
chr19:2434868|2435168 hsa-miR-10400-5p 1 1 0
chr19:2434868|2435168 hsa-miR-1233-5p 1 0 0
chr19:2434868|2435168 hsa-miR-4763-3p 1 0 0
chr19:2434868|2435168 hsa-miR-6778-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6787-5p 1 1 0
chr19:2434868|2435168 hsa-miR-6865-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6870-5p 1 0 0
chr19:2434868|2435168 hsa-miR-5001-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6752-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6756-5p 1 1 0
chr19:2434868|2435168 hsa-miR-6803-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6815-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6851-5p 1 1 0
chr19:2434868|2435168 hsa-miR-6722-3p 1 0 0
chr19:2434868|2435168 hsa-miR-6788-5p 1 0 0
chr19:2434868|2435168 hsa-miR-7111-5p 1 0 0
chr19:2434868|2435168 hsa-miR-4728-5p 1 0 0
chr19:2434868|2435168 hsa-miR-10396a-5p 1 0 0
chr19:2434868|2435168 hsa-miR-10396b-5p 1 0 0
chr19:2434868|2435168 hsa-miR-1909-3p 1 0 0
chr19:2434868|2435168 hsa-miR-328-5p 1 0 0
chr19:2434868|2435168 hsa-miR-4632-5p 1 0 0
chr19:2434868|2435168 hsa-miR-4726-5p 1 0 0
chr19:2434868|2435168 hsa-miR-4745-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6729-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6738-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6794-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6795-5p 1 0 0
chr19:2434868|2435168 hsa-miR-3187-5p 1 1 0
chr19:2434868|2435168 hsa-miR-939-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6731-5p 1 0 0
chr19:2434868|2435168 hsa-miR-6799-3p 0 1 0
chr19:2434868|2435168 hsa-miR-7151-3p 0 1 0
chr19:2434868|2435168 hsa-miR-6784-3p 0 1 0
chr19:2434868|2435168 hsa-miR-6862-3p 0 1 0
chr19:2434868|2435168 hsa-miR-10401-3p 0 1 0
chr19:2434868|2435168 hsa-miR-10392-3p 0 1 0
chr19:2434868|2435168 hsa-miR-3619-5p 1 0 0
chr19:2434868|2435168 hsa-miR-5699-3p 0 1 0
chr19:2434868|2435168 hsa-miR-520e-5p 0 1 0
chr19:2434868|2435168 hsa-miR-301b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:2434868|2435168
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MPATPWPGRSAPAPACRAALARRAGSAAPPAPVPS
Nucleotide Sequence CTGCCGGCCACACCTTGGCCTGGTAGGTCTGCTCCAGCTCCAGCTTGTAGAGCCGCACTTGCTCGTCGTGCTGGCTCCGCAGCTCCTCCAGCGCCTGTGCCATCTTGA
CircID chr19:2434868|2435168
ORF Type ORF2
Protein Length 95
Nucleotide Length 285
Protein Sequence MVRAQLGAVQLWGDGRVSAGAGRGGVPTGRPRPPACRPHLGLVGLLQLQLVEPHLLVVLAPQLLQRLCHLEVVLLLPAAVHLHQAPLVPPPRLPH
Nucleotide Sequence CTGGTCAGAGCTCAGCTTGGCGCTGTCCAGCTGTGGGGAGACGGGCGGGTGAGTGCGGGCGCGGGGCGGGGCGGGGTTCCCACCGGCCGCCCCCGCCCACCCGCCTGCCGGCCACACCTTGGCCTGGTAGGTCTGCTCCAGCTCCAGCTTGTAGAGCCGCACTTGCTCGTCGTGCTGGCTCCGCAGCTCCTCCAGCGCCTGTGCCATCTTGAAGTCGTACTCCTGCTGCCGGCTGCTGTCCACCTCCACCAGGCGCCGCTCGTGCCGCCGCCGCGTCTCCCGCAC
CircID chr19:2434868|2435168
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MKSYSCCRLLSTSTRRRSCRRRVSR
Nucleotide Sequence TTGAAGTCGTACTCCTGCTGCCGGCTGCTGTCCACCTCCACCAGGCGCCGCTCGTGCCGCCGCCGCGTCTCCCGC
CircID chr19:2434868|2435168
ORF Type ORF4
Protein Length 89
Nucleotide Length 267
Protein Sequence MVEVDSSRQQEYDFKMAQALEELRSQHDEQVRLYKLELEQTYQAKVWPAGGWAGAAGGNPAPPRARTHPPVSPQLDSAKLSSDQNDKAA
Nucleotide Sequence CTGGTGGAGGTGGACAGCAGCCGGCAGCAGGAGTACGACTTCAAGATGGCACAGGCGCTGGAGGAGCTGCGGAGCCAGCACGACGAGCAAGTGCGGCTCTACAAGCTGGAGCTGGAGCAGACCTACCAGGCCAAGGTGTGGCCGGCAGGCGGGTGGGCGGGGGCGGCCGGTGGGAACCCCGCCCCGCCCCGCGCCCGCACTCACCCGCCCGTCTCCCCACAGCTGGACAGCGCCAAGCTGAGCTCTGACCAGAACGACAAGGCGGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab