CircRNA Information

General Information
circRNA Basic Information
CircID chr19:2477762|2477962
Strand +
CircType exon
Host Gene ENSG00000099860.7;
Algorism CIRI2;
Sequence TCCACCCCCGAGTGGACAGTCTGGACCCTCCGTGATGGGGAAGGCGGCAGCGTGCCCCGCCACTCCGGCTTCTGCTCCATCCCAAGGCCTCAGCTTCGGGGGTCCTGTCTCCTGCTGGCCTGGGTCCCCCCTTCTCCATCGGATCGGCGGCCGCCAGCTCCTGGATCTCCGCCCTGGGGGCGGCCGCTCACTCCCCTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:2477762|2477962 hsa-miR-198 0 0 1
chr19:2477762|2477962 hsa-miR-214-5p 0 0 1
chr19:2477762|2477962 hsa-miR-214-3p 0 0 1
chr19:2477762|2477962 hsa-miR-608 1 1 1
chr19:2477762|2477962 hsa-miR-298 1 1 1
chr19:2477762|2477962 hsa-miR-708-5p 0 0 1
chr19:2477762|2477962 hsa-miR-708-3p 0 0 1
chr19:2477762|2477962 hsa-miR-744-5p 0 0 1
chr19:2477762|2477962 hsa-miR-744-3p 0 0 1
chr19:2477762|2477962 hsa-miR-665 0 1 1
chr19:2477762|2477962 hsa-miR-361-3p 0 1 1
chr19:2477762|2477962 hsa-miR-28-5p 0 0 1
chr19:2477762|2477962 hsa-miR-769-3p 0 0 1
chr19:2477762|2477962 hsa-miR-450b-3p 0 0 1
chr19:2477762|2477962 hsa-miR-663 0 0 1
chr19:2477762|2477962 hsa-miR-572 0 1 0
chr19:2477762|2477962 hsa-miR-637 1 0 0
chr19:2477762|2477962 hsa-miR-663a 1 1 0
chr19:2477762|2477962 hsa-miR-658 1 0 0
chr19:2477762|2477962 hsa-miR-762 1 1 0
chr19:2477762|2477962 hsa-miR-940 0 1 0
chr19:2477762|2477962 hsa-miR-711 0 1 0
chr19:2477762|2477962 hsa-miR-3141 0 1 0
chr19:2477762|2477962 hsa-miR-3154 0 1 0
chr19:2477762|2477962 hsa-miR-3188 1 0 0
chr19:2477762|2477962 hsa-miR-4425 0 1 0
chr19:2477762|2477962 hsa-miR-4428 1 0 0
chr19:2477762|2477962 hsa-miR-4462 1 0 0
chr19:2477762|2477962 hsa-miR-4468 0 1 0
chr19:2477762|2477962 hsa-miR-4507 1 0 0
chr19:2477762|2477962 hsa-miR-4516 0 1 0
chr19:2477762|2477962 hsa-miR-4530 0 1 0
chr19:2477762|2477962 hsa-miR-4531 0 1 0
chr19:2477762|2477962 hsa-miR-4534 0 1 0
chr19:2477762|2477962 hsa-miR-3960 1 0 0
chr19:2477762|2477962 hsa-miR-4651 1 0 0
chr19:2477762|2477962 hsa-miR-4683 0 1 0
chr19:2477762|2477962 hsa-miR-4706 1 0 0
chr19:2477762|2477962 hsa-miR-4739 1 0 0
chr19:2477762|2477962 hsa-miR-4767 1 0 0
chr19:2477762|2477962 hsa-miR-5703 0 1 0
chr19:2477762|2477962 hsa-miR-6081 1 1 0
chr19:2477762|2477962 hsa-miR-6125 1 0 0
chr19:2477762|2477962 hsa-miR-6165 0 1 0
chr19:2477762|2477962 hsa-miR-8082 0 1 0
chr19:2477762|2477962 hsa-miR-8085 1 0 0
chr19:2477762|2477962 hsa-miR-8089 1 0 0
chr19:2477762|2477962 hsa-miR-4433b-3p 1 0 0
chr19:2477762|2477962 hsa-miR-4726-3p 1 0 0
chr19:2477762|2477962 hsa-miR-6765-5p 1 0 0
chr19:2477762|2477962 hsa-miR-671-5p 1 1 0
chr19:2477762|2477962 hsa-miR-7106-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6894-5p 1 0 0
chr19:2477762|2477962 hsa-miR-25-5p 0 1 0
chr19:2477762|2477962 hsa-miR-6510-5p 0 1 0
chr19:2477762|2477962 hsa-miR-6728-5p 1 1 0
chr19:2477762|2477962 hsa-miR-139-3p 1 0 0
chr19:2477762|2477962 hsa-miR-6089 1 1 0
chr19:2477762|2477962 hsa-miR-6757-5p 1 0 0
chr19:2477762|2477962 hsa-miR-4695-5p 1 0 0
chr19:2477762|2477962 hsa-miR-7160-5p 1 1 0
chr19:2477762|2477962 hsa-miR-6840-5p 0 1 0
chr19:2477762|2477962 hsa-miR-6716-5p 1 0 0
chr19:2477762|2477962 hsa-miR-3180-3p 1 1 0
chr19:2477762|2477962 hsa-miR-6732-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6782-5p 1 0 0
chr19:2477762|2477962 hsa-miR-5008-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6740-5p 1 0 0
chr19:2477762|2477962 hsa-miR-1908-3p 1 1 0
chr19:2477762|2477962 hsa-miR-6753-5p 1 0 0
chr19:2477762|2477962 hsa-miR-4713-3p 1 1 0
chr19:2477762|2477962 hsa-miR-4787-5p 1 1 0
chr19:2477762|2477962 hsa-miR-149-3p 1 0 0
chr19:2477762|2477962 hsa-miR-3191-3p 1 0 0
chr19:2477762|2477962 hsa-miR-4707-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6814-5p 1 0 0
chr19:2477762|2477962 hsa-miR-4649-3p 0 1 0
chr19:2477762|2477962 hsa-miR-6880-3p 0 1 0
chr19:2477762|2477962 hsa-miR-1199-3p 0 1 0
chr19:2477762|2477962 hsa-miR-4524a-3p 0 1 0
chr19:2477762|2477962 hsa-miR-4802-5p 0 1 0
chr19:2477762|2477962 hsa-miR-6787-5p 1 1 0
chr19:2477762|2477962 hsa-miR-1343-5p 1 0 0
chr19:2477762|2477962 hsa-miR-3180 1 0 0
chr19:2477762|2477962 hsa-miR-5001-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6726-5p 0 1 0
chr19:2477762|2477962 hsa-miR-6737-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6743-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6803-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6819-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6851-5p 1 0 0
chr19:2477762|2477962 hsa-miR-1249-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6722-3p 1 0 0
chr19:2477762|2477962 hsa-miR-6780a-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6875-5p 1 0 0
chr19:2477762|2477962 hsa-miR-1915-3p 1 1 0
chr19:2477762|2477962 hsa-miR-3620-5p 1 0 0
chr19:2477762|2477962 hsa-miR-5196-5p 1 1 0
chr19:2477762|2477962 hsa-miR-10396a-5p 0 1 0
chr19:2477762|2477962 hsa-miR-10396b-5p 1 1 0
chr19:2477762|2477962 hsa-miR-1909-3p 1 0 0
chr19:2477762|2477962 hsa-miR-328-5p 1 0 0
chr19:2477762|2477962 hsa-miR-4685-5p 1 1 0
chr19:2477762|2477962 hsa-miR-4726-5p 1 1 0
chr19:2477762|2477962 hsa-miR-4745-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6795-5p 1 1 0
chr19:2477762|2477962 hsa-miR-6858-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6887-5p 1 1 0
chr19:2477762|2477962 hsa-miR-939-5p 1 0 0
chr19:2477762|2477962 hsa-miR-1238-5p 0 1 0
chr19:2477762|2477962 hsa-miR-4769-5p 1 1 0
chr19:2477762|2477962 hsa-miR-1266-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6773-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6762-5p 1 0 0
chr19:2477762|2477962 hsa-miR-6837-5p 1 0 0
chr19:2477762|2477962 hsa-miR-3619-5p 0 1 0
chr19:2477762|2477962 hsa-miR-6764-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:2477762|2477962
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MLAWVPPSPSDRRPPAPGSPPWGRPLTPLL
Nucleotide Sequence CTGCTGGCCTGGGTCCCCCCTTCTCCATCGGATCGGCGGCCGCCAGCTCCTGGATCTCCGCCCTGGGGGCGGCCGCTCACTCCCCTTCTC
CircID chr19:2477762|2477962
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MGKAAACPATPASAPSQGLSFGGPVSCWPGSPLLHRIGGRQLLDLRPGGGRSLPF
Nucleotide Sequence ATGGGGAAGGCGGCAGCGTGCCCCGCCACTCCGGCTTCTGCTCCATCCCAAGGCCTCAGCTTCGGGGGTCCTGTCTCCTGCTGGCCTGGGTCCCCCCTTCTCCATCGGATCGGCGGCCGCCAGCTCCTGGATCTCCGCCCTGGGGGCGGCCGCTCACTCCCCTTC
CircID chr19:2477762|2477962
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MLHPKASASGVLSPAGLGPPFSIGSAAASSWISALGAAAHSPS
Nucleotide Sequence CTGCTCCATCCCAAGGCCTCAGCTTCGGGGGTCCTGTCTCCTGCTGGCCTGGGTCCCCCCTTCTCCATCGGATCGGCGGCCGCCAGCTCCTGGATCTCCGCCCTGGGGGCGGCCGCTCACTCCCCTTCT
CircID chr19:2477762|2477962
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MRPWDGAEAGVAGHAAAFPITEGPDCPLGGG
Nucleotide Sequence CTGAGGCCTTGGGATGGAGCAGAAGCCGGAGTGGCGGGGCACGCTGCCGCCTTCCCCATCACGGAGGGTCCAGACTGTCCACTCGGGGGTGGA
CircID chr19:2477762|2477962
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MEQKPEWRGTLPPSPSRRVQTVHSGV
Nucleotide Sequence ATGGAGCAGAAGCCGGAGTGGCGGGGCACGCTGCCGCCTTCCCCATCACGGAGGGTCCAGACTGTCCACTCGGGGGTG
CircID chr19:2477762|2477962
ORF Type ORF6
Protein Length 52
Nucleotide Length 156
Protein Sequence MAAADPMEKGGPRPAGDRTPEAEALGWSRSRSGGARCRLPHHGGSRLSTRGW
Nucleotide Sequence CTGGCGGCCGCCGATCCGATGGAGAAGGGGGGACCCAGGCCAGCAGGAGACAGGACCCCCGAAGCTGAGGCCTTGGGATGGAGCAGAAGCCGGAGTGGCGGGGCACGCTGCCGCCTTCCCCATCACGGAGGGTCCAGACTGTCCACTCGGGGGTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab