CircRNA Information

General Information
circRNA Basic Information
CircID chr19:2755513|2755705
Strand -
CircType exon
Host Gene ENSG00000104969.8;
Algorism CIRI2;
Sequence GGGAGAGTTCCTGCAGACAGACCACGGGATGGGGGGCGGGGGCTGTAAAAGGCTTTGGAAGCCACACGATCCGCCACACGGCTGAACGTGAAACCTGCCACTTCTCTGAGAGCGGCCCGGGAGCACCCCAGGATTCTAGAAAACACTCAAGTGACCGAGCTTTCTGGGGGCTGGAAGGGAGGTCGCTGCTGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:2755513|2755705 hsa-miR-346 0 0 1
chr19:2755513|2755705 hsa-miR-503-5p 0 0 1
chr19:2755513|2755705 hsa-miR-503-3p 0 0 1
chr19:2755513|2755705 hsa-miR-608 1 0 1
chr19:2755513|2755705 hsa-miR-632 0 0 1
chr19:2755513|2755705 hsa-miR-634 0 0 1
chr19:2755513|2755705 hsa-miR-657 0 1 1
chr19:2755513|2755705 hsa-miR-873-5p 0 0 1
chr19:2755513|2755705 hsa-miR-873-3p 0 0 1
chr19:2755513|2755705 hsa-miR-1205 0 0 1
chr19:2755513|2755705 hsa-miR-1286 0 0 1
chr19:2755513|2755705 hsa-miR-423-3p 1 0 1
chr19:2755513|2755705 hsa-miR-1184 0 0 1
chr19:2755513|2755705 hsa-miR-574-5p 0 0 1
chr19:2755513|2755705 hsa-miR-361-3p 0 0 1
chr19:2755513|2755705 hsa-miR-1207-5p 0 0 1
chr19:2755513|2755705 hsa-miR-342-5p 0 1 1
chr19:2755513|2755705 hsa-miR-518d-5p 0 0 1
chr19:2755513|2755705 hsa-miR-519b-5p 0 0 1
chr19:2755513|2755705 hsa-miR-519c-5p 0 0 1
chr19:2755513|2755705 hsa-miR-520c-5p 0 0 1
chr19:2755513|2755705 hsa-miR-644 0 0 1
chr19:2755513|2755705 hsa-miR-526a 0 0 1
chr19:2755513|2755705 hsa-miR-637 1 0 0
chr19:2755513|2755705 hsa-miR-644a 0 1 0
chr19:2755513|2755705 hsa-miR-1913 1 0 0
chr19:2755513|2755705 hsa-miR-4313 1 0 0
chr19:2755513|2755705 hsa-miR-3659 0 1 0
chr19:2755513|2755705 hsa-miR-3907 1 1 0
chr19:2755513|2755705 hsa-miR-3943 1 1 0
chr19:2755513|2755705 hsa-miR-4538 1 0 0
chr19:2755513|2755705 hsa-miR-4658 1 1 0
chr19:2755513|2755705 hsa-miR-7155-5p 0 1 0
chr19:2755513|2755705 hsa-miR-4665-3p 1 0 0
chr19:2755513|2755705 hsa-miR-6836-3p 1 0 0
chr19:2755513|2755705 hsa-miR-6720-5p 0 1 0
chr19:2755513|2755705 hsa-miR-210-5p 1 0 0
chr19:2755513|2755705 hsa-miR-296-5p 1 0 0
chr19:2755513|2755705 hsa-miR-3189-5p 1 0 0
chr19:2755513|2755705 hsa-miR-1343-3p 0 1 0
chr19:2755513|2755705 hsa-miR-6852-5p 0 1 0
chr19:2755513|2755705 hsa-miR-7108-3p 0 1 0
chr19:2755513|2755705 hsa-miR-1247-5p 1 0 0
chr19:2755513|2755705 hsa-miR-4707-3p 1 0 0
chr19:2755513|2755705 hsa-miR-4687-5p 1 1 0
chr19:2755513|2755705 hsa-miR-6804-3p 1 0 0
chr19:2755513|2755705 hsa-miR-3180-5p 1 0 0
chr19:2755513|2755705 hsa-miR-4746-3p 1 0 0
chr19:2755513|2755705 hsa-miR-6752-3p 1 0 0
chr19:2755513|2755705 hsa-miR-6856-3p 0 1 0
chr19:2755513|2755705 hsa-miR-6798-3p 1 0 0
chr19:2755513|2755705 hsa-miR-6737-5p 0 1 0
chr19:2755513|2755705 hsa-miR-4685-3p 0 1 0
chr19:2755513|2755705 hsa-miR-6791-5p 1 0 0
chr19:2755513|2755705 hsa-miR-6753-3p 0 1 0
chr19:2755513|2755705 hsa-miR-10401-3p 1 0 0
chr19:2755513|2755705 hsa-miR-6810-3p 1 0 0
chr19:2755513|2755705 hsa-miR-6512-3p 0 1 0
chr19:2755513|2755705 hsa-miR-6783-3p 0 1 0
chr19:2755513|2755705 hsa-miR-99b-3p 0 1 0
chr19:2755513|2755705 hsa-miR-3622b-3p 1 0 0
chr19:2755513|2755705 hsa-miR-9902 0 1 0
chr19:2755513|2755705 hsa-miR-10399-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:2755513|2755705
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MEATRSATRLNVKPATSLRAAREHPRILENTQVTELSGGWKGGRCW
Nucleotide Sequence TTGGAAGCCACACGATCCGCCACACGGCTGAACGTGAAACCTGCCACTTCTCTGAGAGCGGCCCGGGAGCACCCCAGGATTCTAGAAAACACTCAAGTGACCGAGCTTTCTGGGGGCTGGAAGGGAGGTCGCTGCTGG
CircID chr19:2755513|2755705
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MGCSRAALREVAGFTFSRVADRVASKAFYSPRPPSRGLSAGTL
Nucleotide Sequence CTGGGGTGCTCCCGGGCCGCTCTCAGAGAAGTGGCAGGTTTCACGTTCAGCCGTGTGGCGGATCGTGTGGCTTCCAAAGCCTTTTACAGCCCCCGCCCCCCATCCCGTGGTCTGTCTGCAGGAACTCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab