CircRNA Information

General Information
circRNA Basic Information
CircID chr19:29615537|29615659
Strand +
CircType exon
Host Gene ENSG00000105171.8;
Algorism CIRI2;
Sequence CAGTGTTAACCCCGGTGTGCTTCCTGCCAGTCTGTTCCTCCCCATGGGAGTCACACAAAATGAAAATCTCCTAGAAAGAGAAATTCCTCTGTCCTCTGACTTCTTCACTTAGTACGCTGCGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:29615537|29615659 hsa-miR-141-5p 0 0 1
chr19:29615537|29615659 hsa-miR-141-3p 0 0 1
chr19:29615537|29615659 hsa-miR-134-5p 0 0 1
chr19:29615537|29615659 hsa-miR-134-3p 0 0 1
chr19:29615537|29615659 hsa-miR-200a-5p 0 0 1
chr19:29615537|29615659 hsa-miR-200a-3p 0 0 1
chr19:29615537|29615659 hsa-miR-579-5p 0 0 1
chr19:29615537|29615659 hsa-miR-579-3p 0 0 1
chr19:29615537|29615659 hsa-miR-599 0 0 1
chr19:29615537|29615659 hsa-miR-939-5p 0 0 1
chr19:29615537|29615659 hsa-miR-939-3p 0 0 1
chr19:29615537|29615659 hsa-miR-1207-5p 1 0 1
chr19:29615537|29615659 hsa-miR-220a 0 0 1
chr19:29615537|29615659 hsa-miR-147 0 0 1
chr19:29615537|29615659 hsa-miR-3175 1 0 0
chr19:29615537|29615659 hsa-miR-3197 1 0 0
chr19:29615537|29615659 hsa-miR-4298 1 0 0
chr19:29615537|29615659 hsa-miR-3911 1 0 0
chr19:29615537|29615659 hsa-miR-4514 1 0 0
chr19:29615537|29615659 hsa-miR-4689 1 0 0
chr19:29615537|29615659 hsa-miR-4706 1 0 0
chr19:29615537|29615659 hsa-miR-4736 1 0 0
chr19:29615537|29615659 hsa-miR-4739 1 0 0
chr19:29615537|29615659 hsa-miR-6081 1 0 0
chr19:29615537|29615659 hsa-miR-7150 1 0 0
chr19:29615537|29615659 hsa-miR-8073 1 0 0
chr19:29615537|29615659 hsa-miR-8085 1 0 0
chr19:29615537|29615659 hsa-miR-8089 1 0 0
chr19:29615537|29615659 hsa-miR-7106-5p 1 1 0
chr19:29615537|29615659 hsa-miR-6825-5p 1 1 0
chr19:29615537|29615659 hsa-miR-6894-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6799-5p 1 0 0
chr19:29615537|29615659 hsa-miR-766-5p 0 1 0
chr19:29615537|29615659 hsa-miR-3192-5p 1 0 0
chr19:29615537|29615659 hsa-miR-7847-3p 1 0 0
chr19:29615537|29615659 hsa-miR-4722-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6890-5p 1 0 0
chr19:29615537|29615659 hsa-miR-4655-5p 0 1 0
chr19:29615537|29615659 hsa-miR-6742-5p 1 0 0
chr19:29615537|29615659 hsa-miR-3180-3p 1 0 0
chr19:29615537|29615659 hsa-miR-3126-5p 1 1 0
chr19:29615537|29615659 hsa-miR-6810-5p 1 0 0
chr19:29615537|29615659 hsa-miR-7109-5p 1 0 0
chr19:29615537|29615659 hsa-miR-1229-5p 1 0 0
chr19:29615537|29615659 hsa-miR-5010-3p 0 1 0
chr19:29615537|29615659 hsa-miR-6771-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6847-5p 1 1 0
chr19:29615537|29615659 hsa-miR-149-3p 1 0 0
chr19:29615537|29615659 hsa-miR-6800-5p 1 0 0
chr19:29615537|29615659 hsa-miR-7112-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6801-5p 1 1 0
chr19:29615537|29615659 hsa-miR-5004-5p 0 1 0
chr19:29615537|29615659 hsa-miR-4763-3p 1 0 0
chr19:29615537|29615659 hsa-miR-1343-5p 1 0 0
chr19:29615537|29615659 hsa-miR-3180 1 0 0
chr19:29615537|29615659 hsa-miR-6803-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6819-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6763-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6780a-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6797-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6879-5p 1 0 0
chr19:29615537|29615659 hsa-miR-7111-5p 1 1 0
chr19:29615537|29615659 hsa-miR-4728-5p 1 1 0
chr19:29615537|29615659 hsa-miR-328-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6735-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6795-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6858-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6883-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6887-5p 1 1 0
chr19:29615537|29615659 hsa-miR-6885-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6750-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6766-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6849-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6791-5p 1 0 0
chr19:29615537|29615659 hsa-miR-9851-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6529-5p 1 0 0
chr19:29615537|29615659 hsa-miR-6859-5p 1 0 0
chr19:29615537|29615659 hsa-miR-7161-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:29615537|29615659
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MFLPMGVTQNENLLEREIPLSSDFFT
Nucleotide Sequence CTGTTCCTCCCCATGGGAGTCACACAAAATGAAAATCTCCTAGAAAGAGAAATTCCTCTGTCCTCTGACTTCTTCACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab