CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3053394|3053559
Strand -
CircType exon
Host Gene ENSG00000104964.13;
Algorism CIRI2;
Sequence GGGAAAGGGGCAGCTAGCATTGCGTGCATGCAGTACCAGGGTGAGAGGGCTGTGGCCCAGGCAGACTGTCGGTTACACATGTTCAAAACGGGGGAAGGGCCGGGGCTGCTGCGCTTCGCGAGGTCTTGCTCCCTTGGGACCTGGTCTCCCATCTGACCCTCCAGGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3053394|3053559 hsa-miR-22-5p 0 0 1
chr19:3053394|3053559 hsa-miR-22-3p 0 0 1
chr19:3053394|3053559 hsa-miR-217-5p 0 0 1
chr19:3053394|3053559 hsa-miR-217-3p 0 0 1
chr19:3053394|3053559 hsa-miR-346 0 0 1
chr19:3053394|3053559 hsa-miR-621 0 0 1
chr19:3053394|3053559 hsa-miR-622 0 1 1
chr19:3053394|3053559 hsa-miR-661 1 1 1
chr19:3053394|3053559 hsa-miR-1229-5p 0 0 1
chr19:3053394|3053559 hsa-miR-1229-3p 0 0 1
chr19:3053394|3053559 hsa-miR-324-3p 0 0 1
chr19:3053394|3053559 hsa-miR-509-3-5p 0 0 1
chr19:3053394|3053559 hsa-miR-509-5p 0 0 1
chr19:3053394|3053559 hsa-miR-1254 0 0 1
chr19:3053394|3053559 hsa-miR-1913 1 0 0
chr19:3053394|3053559 hsa-miR-3651 1 1 0
chr19:3053394|3053559 hsa-miR-4739 1 0 0
chr19:3053394|3053559 hsa-miR-6081 1 0 0
chr19:3053394|3053559 hsa-miR-6090 1 0 0
chr19:3053394|3053559 hsa-miR-7706 0 1 0
chr19:3053394|3053559 hsa-miR-9900 0 1 0
chr19:3053394|3053559 hsa-miR-12125 1 1 0
chr19:3053394|3053559 hsa-miR-6749-3p 1 0 0
chr19:3053394|3053559 hsa-miR-4747-3p 1 0 0
chr19:3053394|3053559 hsa-miR-125b-1-3p 1 0 0
chr19:3053394|3053559 hsa-miR-4786-5p 0 1 0
chr19:3053394|3053559 hsa-miR-6515-5p 0 1 0
chr19:3053394|3053559 hsa-miR-6840-5p 1 0 0
chr19:3053394|3053559 hsa-miR-1178-5p 0 1 0
chr19:3053394|3053559 hsa-miR-6871-5p 0 1 0
chr19:3053394|3053559 hsa-miR-6805-5p 1 0 0
chr19:3053394|3053559 hsa-miR-939-3p 0 1 0
chr19:3053394|3053559 hsa-miR-6763-3p 1 1 0
chr19:3053394|3053559 hsa-miR-5001-3p 0 1 0
chr19:3053394|3053559 hsa-miR-3667-3p 1 0 0
chr19:3053394|3053559 hsa-miR-6771-5p 1 0 0
chr19:3053394|3053559 hsa-miR-7850-5p 0 1 0
chr19:3053394|3053559 hsa-miR-423-5p 1 0 0
chr19:3053394|3053559 hsa-miR-4687-5p 1 0 0
chr19:3053394|3053559 hsa-miR-6813-3p 1 0 0
chr19:3053394|3053559 hsa-miR-6801-5p 0 1 0
chr19:3053394|3053559 hsa-miR-6814-5p 0 1 0
chr19:3053394|3053559 hsa-miR-3614-3p 1 1 0
chr19:3053394|3053559 hsa-miR-4632-3p 1 0 0
chr19:3053394|3053559 hsa-miR-7848-3p 1 0 0
chr19:3053394|3053559 hsa-miR-6856-3p 0 1 0
chr19:3053394|3053559 hsa-miR-6886-3p 1 1 0
chr19:3053394|3053559 hsa-miR-5088-3p 1 0 0
chr19:3053394|3053559 hsa-miR-6880-3p 1 0 0
chr19:3053394|3053559 hsa-miR-449c-3p 0 1 0
chr19:3053394|3053559 hsa-miR-4717-5p 1 0 0
chr19:3053394|3053559 hsa-miR-6812-3p 1 0 0
chr19:3053394|3053559 hsa-miR-1249-3p 1 0 0
chr19:3053394|3053559 hsa-miR-1233-5p 1 1 0
chr19:3053394|3053559 hsa-miR-1249-5p 1 0 0
chr19:3053394|3053559 hsa-miR-6797-5p 1 0 0
chr19:3053394|3053559 hsa-miR-320a-5p 0 1 0
chr19:3053394|3053559 hsa-miR-328-5p 1 0 0
chr19:3053394|3053559 hsa-miR-6795-5p 1 0 0
chr19:3053394|3053559 hsa-miR-6887-5p 1 0 0
chr19:3053394|3053559 hsa-miR-939-5p 1 0 0
chr19:3053394|3053559 hsa-miR-10396a-3p 1 1 0
chr19:3053394|3053559 hsa-miR-10396b-3p 1 1 0
chr19:3053394|3053559 hsa-miR-4665-5p 1 0 0
chr19:3053394|3053559 hsa-miR-3116 0 1 0
chr19:3053394|3053559 hsa-miR-6791-5p 1 0 0
chr19:3053394|3053559 hsa-miR-6784-3p 1 0 0
chr19:3053394|3053559 hsa-miR-6862-3p 1 0 0
chr19:3053394|3053559 hsa-miR-6775-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:3053394|3053559
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MQYQGERAVAQADCRLHMFKTGEGPGLLRFARSCSLGTWSPI
Nucleotide Sequence ATGCAGTACCAGGGTGAGAGGGCTGTGGCCCAGGCAGACTGTCGGTTACACATGTTCAAAACGGGGGAAGGGCCGGGGCTGCTGCGCTTCGCGAGGTCTTGCTCCCTTGGGACCTGGTCTCCCATCTGA
CircID chr19:3053394|3053559
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MRACSTRVRGLWPRQTVGYTCSKRGKGRGCCASRGLAPLGPGLPSDPPG
Nucleotide Sequence TTGCGTGCATGCAGTACCAGGGTGAGAGGGCTGTGGCCCAGGCAGACTGTCGGTTACACATGTTCAAAACGGGGGAAGGGCCGGGGCTGCTGCGCTTCGCGAGGTCTTGCTCCCTTGGGACCTGGTCTCCCATCTGACCCTCCAGGC
CircID chr19:3053394|3053559
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MSVTHVQNGGRAGAAALREVLLPWDLVSHLTLQ
Nucleotide Sequence CTGTCGGTTACACATGTTCAAAACGGGGGAAGGGCCGGGGCTGCTGCGCTTCGCGAGGTCTTGCTCCCTTGGGACCTGGTCTCCCATCTGACCCTCCAG
CircID chr19:3053394|3053559
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence LEGQMGDQVPREQDLAKRSSPGPSPVLNMCNRQSAWATALSPWYCMHAMLAAPF
Nucleotide Sequence CTGGAGGGTCAGATGGGAGACCAGGTCCCAAGGGAGCAAGACCTCGCGAAGCGCAGCAGCCCCGGCCCTTCCCCCGTTTTGAACATGTGTAACCGACAGTCTGCCTGGGCCACAGCCCTCTCACCCTGGTACTGCATGCACGCAATGCTAGCTGCCCCTTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab