CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3053595|3053779
Strand -
CircType exon
Host Gene ENSG00000104964.13;
Algorism CIRI2;
Sequence CTAACCAGGCTGCAGGGGAGGAGGAGGGAAGCCGGGAATGGGGTAGGAAGAAAGCTAGAGGTGGCCTGCAAGCTGGGCTGGGGCCCCCGCCGGCGGCCACCATAAATACTATGGGAGTTTAGCCAATCCCGAGCTCCGCTGTGTCTTGTGCTAAACATTCCTTTCTCTCCGTGCCTCTGTCTCCC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3053595|3053779 hsa-miR-185-5p 0 0 1
chr19:3053595|3053779 hsa-miR-185-3p 0 0 1
chr19:3053595|3053779 hsa-miR-206 0 0 1
chr19:3053595|3053779 hsa-miR-564 0 0 1
chr19:3053595|3053779 hsa-miR-584-5p 0 0 1
chr19:3053595|3053779 hsa-miR-584-3p 0 0 1
chr19:3053595|3053779 hsa-miR-613 0 0 1
chr19:3053595|3053779 hsa-miR-1251-5p 0 0 1
chr19:3053595|3053779 hsa-miR-1251-3p 0 0 1
chr19:3053595|3053779 hsa-miR-296-5p 0 1 1
chr19:3053595|3053779 hsa-miR-1184 0 0 1
chr19:3053595|3053779 hsa-miR-331-3p 0 0 1
chr19:3053595|3053779 hsa-miR-642 0 0 1
chr19:3053595|3053779 hsa-miR-1 0 0 1
chr19:3053595|3053779 hsa-miR-663 0 0 1
chr19:3053595|3053779 hsa-miR-663a 1 1 0
chr19:3053595|3053779 hsa-miR-1281 1 0 0
chr19:3053595|3053779 hsa-miR-1913 1 0 0
chr19:3053595|3053779 hsa-miR-1976 1 0 0
chr19:3053595|3053779 hsa-miR-3175 1 0 0
chr19:3053595|3053779 hsa-miR-3197 1 0 0
chr19:3053595|3053779 hsa-miR-4306 0 1 0
chr19:3053595|3053779 hsa-miR-4268 1 0 0
chr19:3053595|3053779 hsa-miR-4279 1 0 0
chr19:3053595|3053779 hsa-miR-3612 1 0 0
chr19:3053595|3053779 hsa-miR-3615 1 0 0
chr19:3053595|3053779 hsa-miR-3685 0 1 0
chr19:3053595|3053779 hsa-miR-3916 0 1 0
chr19:3053595|3053779 hsa-miR-4462 1 1 0
chr19:3053595|3053779 hsa-miR-4706 1 0 0
chr19:3053595|3053779 hsa-miR-4767 1 0 0
chr19:3053595|3053779 hsa-miR-5193 1 1 0
chr19:3053595|3053779 hsa-miR-5685 0 1 0
chr19:3053595|3053779 hsa-miR-5739 1 1 0
chr19:3053595|3053779 hsa-miR-9903 1 0 0
chr19:3053595|3053779 hsa-miR-12115 1 1 0
chr19:3053595|3053779 hsa-miR-12116 1 0 0
chr19:3053595|3053779 hsa-miR-6749-3p 1 1 0
chr19:3053595|3053779 hsa-miR-6836-3p 1 0 0
chr19:3053595|3053779 hsa-miR-149-5p 1 0 0
chr19:3053595|3053779 hsa-miR-6720-5p 1 0 0
chr19:3053595|3053779 hsa-miR-6892-3p 1 0 0
chr19:3053595|3053779 hsa-miR-3622a-5p 0 1 0
chr19:3053595|3053779 hsa-miR-874-5p 0 1 0
chr19:3053595|3053779 hsa-miR-6875-3p 1 1 0
chr19:3053595|3053779 hsa-miR-3189-5p 1 0 0
chr19:3053595|3053779 hsa-miR-7110-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6845-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6768-5p 1 0 0
chr19:3053595|3053779 hsa-miR-877-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6798-5p 1 0 0
chr19:3053595|3053779 hsa-miR-2467-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6740-3p 1 0 0
chr19:3053595|3053779 hsa-miR-4436b-5p 1 0 0
chr19:3053595|3053779 hsa-miR-6815-3p 1 0 0
chr19:3053595|3053779 hsa-miR-4763-5p 1 0 0
chr19:3053595|3053779 hsa-miR-6763-3p 1 0 0
chr19:3053595|3053779 hsa-miR-1908-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6894-3p 1 0 0
chr19:3053595|3053779 hsa-miR-7113-3p 1 0 0
chr19:3053595|3053779 hsa-miR-3667-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6830-3p 1 0 0
chr19:3053595|3053779 hsa-miR-4667-3p 1 1 0
chr19:3053595|3053779 hsa-miR-4446-5p 1 1 0
chr19:3053595|3053779 hsa-miR-1306-5p 1 0 0
chr19:3053595|3053779 hsa-miR-585-5p 0 1 0
chr19:3053595|3053779 hsa-miR-423-5p 1 0 0
chr19:3053595|3053779 hsa-miR-7846-3p 0 1 0
chr19:3053595|3053779 hsa-miR-4707-5p 1 0 0
chr19:3053595|3053779 hsa-miR-1236-3p 1 0 0
chr19:3053595|3053779 hsa-miR-1224-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6741-3p 1 0 0
chr19:3053595|3053779 hsa-miR-3940-3p 0 1 0
chr19:3053595|3053779 hsa-miR-216a-3p 0 1 0
chr19:3053595|3053779 hsa-miR-6758-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6886-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6880-3p 1 1 0
chr19:3053595|3053779 hsa-miR-3124-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6883-3p 1 0 0
chr19:3053595|3053779 hsa-miR-4750-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6798-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6734-3p 1 1 0
chr19:3053595|3053779 hsa-miR-6800-3p 1 0 0
chr19:3053595|3053779 hsa-miR-3162-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6731-3p 1 0 0
chr19:3053595|3053779 hsa-miR-511-3p 0 1 0
chr19:3053595|3053779 hsa-miR-10400-5p 1 0 0
chr19:3053595|3053779 hsa-miR-1207-5p 1 0 0
chr19:3053595|3053779 hsa-miR-4763-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6787-5p 1 1 0
chr19:3053595|3053779 hsa-miR-6797-5p 1 1 0
chr19:3053595|3053779 hsa-miR-320a-5p 1 0 0
chr19:3053595|3053779 hsa-miR-6754-3p 1 0 0
chr19:3053595|3053779 hsa-miR-10396b-5p 0 1 0
chr19:3053595|3053779 hsa-miR-6856-5p 1 0 0
chr19:3053595|3053779 hsa-miR-6727-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6756-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6792-3p 1 0 0
chr19:3053595|3053779 hsa-miR-6810-3p 0 1 0
chr19:3053595|3053779 hsa-miR-6829-3p 1 0 0
chr19:3053595|3053779 hsa-miR-4701-5p 1 0 0
chr19:3053595|3053779 hsa-miR-6744-3p 1 0 0
chr19:3053595|3053779 hsa-miR-4691-5p 1 0 0
chr19:3053595|3053779 hsa-miR-4690-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:3053595|3053779
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MQGRRREAGNGVGRKLEVACKLGWGPRRRPP
Nucleotide Sequence CTGCAGGGGAGGAGGAGGGAAGCCGGGAATGGGGTAGGAAGAAAGCTAGAGGTGGCCTGCAAGCTGGGCTGGGGCCCCCGCCGGCGGCCACCATAA
CircID chr19:3053595|3053779
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MFSTRHSGARDWLNSHSIYGGRRRGPQPSLQATSSFLPTPFPASLLLPCSLV
Nucleotide Sequence ATGTTTAGCACAAGACACAGCGGAGCTCGGGATTGGCTAAACTCCCATAGTATTTATGGTGGCCGCCGGCGGGGGCCCCAGCCCAGCTTGCAGGCCACCTCTAGCTTTCTTCCTACCCCATTCCCGGCTTCCCTCCTCCTCCCCTGCAGCCTGGTT
CircID chr19:3053595|3053779
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MVAAGGGPSPACRPPLAFFLPHSRLPSSSPAAWL
Nucleotide Sequence ATGGTGGCCGCCGGCGGGGGCCCCAGCCCAGCTTGCAGGCCACCTCTAGCTTTCTTCCTACCCCATTCCCGGCTTCCCTCCTCCTCCCCTGCAGCCTGGTTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab