CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3053905|3054152
Strand -
CircType exon
Host Gene ENSG00000104964.13;
Algorism CIRI2;
Sequence CCAGCGCGGACAGCGAGAGGAGGCCGGTGCCTGCGCTGACCGCCGGCAGCGAAGGCGGCTGCAGCCCCACGGGTAGTGGGGTCAAGGGCAGGGCCAGGGCCTGCAGCTGGGACAGCTGGTGGGCTTGGAGCTGCTGCTGCAGGGCGGGGGAGGGGAACATTAGCTGCCTGGGGCCCACCTGTCCCCCGCCCACCCGCCCAGGTCCCCATACATACTCGGATGATAGAGTTCAGCTCGGGAGCGGTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3053905|3054152 hsa-miR-15a-5p 0 0 1
chr19:3053905|3054152 hsa-miR-15a-3p 0 0 1
chr19:3053905|3054152 hsa-miR-99a-5p 0 0 1
chr19:3053905|3054152 hsa-miR-99a-3p 0 0 1
chr19:3053905|3054152 hsa-miR-100-5p 0 0 1
chr19:3053905|3054152 hsa-miR-100-3p 0 0 1
chr19:3053905|3054152 hsa-miR-107 0 0 1
chr19:3053905|3054152 hsa-miR-15b-5p 0 0 1
chr19:3053905|3054152 hsa-miR-15b-3p 0 0 1
chr19:3053905|3054152 hsa-miR-195-5p 0 0 1
chr19:3053905|3054152 hsa-miR-195-3p 0 0 1
chr19:3053905|3054152 hsa-miR-99b-5p 0 0 1
chr19:3053905|3054152 hsa-miR-99b-3p 0 0 1
chr19:3053905|3054152 hsa-miR-328-5p 0 0 1
chr19:3053905|3054152 hsa-miR-328-3p 0 0 1
chr19:3053905|3054152 hsa-miR-424-5p 0 0 1
chr19:3053905|3054152 hsa-miR-424-3p 0 0 1
chr19:3053905|3054152 hsa-miR-492 0 0 1
chr19:3053905|3054152 hsa-miR-497-5p 0 0 1
chr19:3053905|3054152 hsa-miR-497-3p 0 0 1
chr19:3053905|3054152 hsa-miR-552-5p 0 0 1
chr19:3053905|3054152 hsa-miR-552-3p 0 0 1
chr19:3053905|3054152 hsa-miR-618 0 0 1
chr19:3053905|3054152 hsa-miR-631 0 0 1
chr19:3053905|3054152 hsa-miR-639 0 1 1
chr19:3053905|3054152 hsa-miR-646 0 0 1
chr19:3053905|3054152 hsa-miR-541-5p 0 0 1
chr19:3053905|3054152 hsa-miR-541-3p 0 0 1
chr19:3053905|3054152 hsa-miR-937-5p 0 0 1
chr19:3053905|3054152 hsa-miR-937-3p 0 0 1
chr19:3053905|3054152 hsa-miR-938 0 0 1
chr19:3053905|3054152 hsa-miR-1226-5p 0 0 1
chr19:3053905|3054152 hsa-miR-1226-3p 0 0 1
chr19:3053905|3054152 hsa-miR-1205 0 1 1
chr19:3053905|3054152 hsa-miR-1291 0 0 1
chr19:3053905|3054152 hsa-miR-296-5p 1 0 1
chr19:3053905|3054152 hsa-miR-1184 0 1 1
chr19:3053905|3054152 hsa-miR-654-5p 1 1 1
chr19:3053905|3054152 hsa-miR-409-3p 0 0 1
chr19:3053905|3054152 hsa-miR-103 0 0 1
chr19:3053905|3054152 hsa-miR-16 0 0 1
chr19:3053905|3054152 hsa-miR-720 0 0 1
chr19:3053905|3054152 hsa-miR-886-3p 0 0 1
chr19:3053905|3054152 hsa-miR-663 0 0 1
chr19:3053905|3054152 hsa-miR-663a 0 1 0
chr19:3053905|3054152 hsa-miR-1469 1 1 0
chr19:3053905|3054152 hsa-miR-1538 1 0 0
chr19:3053905|3054152 hsa-miR-1913 1 0 0
chr19:3053905|3054152 hsa-miR-2861 1 1 0
chr19:3053905|3054152 hsa-miR-4286 0 1 0
chr19:3053905|3054152 hsa-miR-3649 0 1 0
chr19:3053905|3054152 hsa-miR-3714 0 1 0
chr19:3053905|3054152 hsa-miR-4512 1 0 0
chr19:3053905|3054152 hsa-miR-4539 1 0 0
chr19:3053905|3054152 hsa-miR-4674 1 0 0
chr19:3053905|3054152 hsa-miR-4721 1 0 0
chr19:3053905|3054152 hsa-miR-4780 0 1 0
chr19:3053905|3054152 hsa-miR-5047 0 1 0
chr19:3053905|3054152 hsa-miR-5193 0 1 0
chr19:3053905|3054152 hsa-miR-12113 0 1 0
chr19:3053905|3054152 hsa-miR-6749-3p 0 1 0
chr19:3053905|3054152 hsa-miR-4665-3p 1 0 0
chr19:3053905|3054152 hsa-miR-7851-3p 0 1 0
chr19:3053905|3054152 hsa-miR-4722-5p 1 0 0
chr19:3053905|3054152 hsa-miR-874-5p 0 1 0
chr19:3053905|3054152 hsa-miR-6840-5p 1 0 0
chr19:3053905|3054152 hsa-miR-3189-5p 1 0 0
chr19:3053905|3054152 hsa-miR-6787-3p 0 1 0
chr19:3053905|3054152 hsa-miR-1228-5p 0 1 0
chr19:3053905|3054152 hsa-miR-7111-3p 0 1 0
chr19:3053905|3054152 hsa-miR-584-3p 1 1 0
chr19:3053905|3054152 hsa-miR-6887-3p 0 1 0
chr19:3053905|3054152 hsa-miR-6752-3p 0 1 0
chr19:3053905|3054152 hsa-miR-6826-3p 0 1 0
chr19:3053905|3054152 hsa-miR-4746-5p 1 0 0
chr19:3053905|3054152 hsa-miR-6880-3p 0 1 0
chr19:3053905|3054152 hsa-miR-3173-5p 0 1 0
chr19:3053905|3054152 hsa-miR-4433b-5p 0 1 0
chr19:3053905|3054152 hsa-miR-4763-3p 1 0 0
chr19:3053905|3054152 hsa-miR-6769b-5p 0 1 0
chr19:3053905|3054152 hsa-miR-6787-5p 0 1 0
chr19:3053905|3054152 hsa-miR-6756-5p 1 1 0
chr19:3053905|3054152 hsa-miR-6722-3p 0 1 0
chr19:3053905|3054152 hsa-miR-10396a-3p 1 0 0
chr19:3053905|3054152 hsa-miR-10396b-3p 1 0 0
chr19:3053905|3054152 hsa-miR-6799-3p 1 1 0
chr19:3053905|3054152 hsa-miR-6773-5p 0 1 0
chr19:3053905|3054152 hsa-miR-4665-5p 0 1 0
chr19:3053905|3054152 hsa-miR-6791-3p 0 1 0
chr19:3053905|3054152 hsa-miR-324-3p 0 1 0
chr19:3053905|3054152 hsa-miR-6724-5p 1 1 0
chr19:3053905|3054152 hsa-miR-2682-3p 1 1 0
chr19:3053905|3054152 hsa-miR-6829-3p 0 1 0
chr19:3053905|3054152 hsa-miR-10400-3p 1 0 0
chr19:3053905|3054152 hsa-miR-6775-3p 1 1 0
chr19:3053905|3054152 hsa-miR-6744-3p 1 0 0
chr19:3053905|3054152 hsa-miR-10394-5p 1 1 0
chr19:3053905|3054152 hsa-miR-137-5p 1 0 0
chr19:3053905|3054152 hsa-miR-10397-5p 0 1 0
chr19:3053905|3054152 hsa-miR-6838-5p 0 1 0
chr19:3053905|3054152 hsa-miR-6811-5p 0 1 0
chr19:3053905|3054152 hsa-miR-3922-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:3053905|3054152
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MTAGSEGGCSPTGSGVKGRARACSWDSWWAWSCCCRAGEGNISCLGPTCPPPTRPGPHTYSDDRVQLGSGD
Nucleotide Sequence CTGACCGCCGGCAGCGAAGGCGGCTGCAGCCCCACGGGTAGTGGGGTCAAGGGCAGGGCCAGGGCCTGCAGCTGGGACAGCTGGTGGGCTTGGAGCTGCTGCTGCAGGGCGGGGGAGGGGAACATTAGCTGCCTGGGGCCCACCTGTCCCCCGCCCACCCGCCCAGGTCCCCATACATACTCGGATGATAGAGTTCAGCTCGGGAGCGGTGAC
CircID chr19:3053905|3054152
ORF Type ORF2
Protein Length 77
Nucleotide Length 231
Protein Sequence MNSIIRVCMGTWAGGRGTGGPQAANVPLPRPAAAAPSPPAVPAAGPGPALDPTTRGAAAAFAAGGQRRHRPPLAVRA
Nucleotide Sequence CTGAACTCTATCATCCGAGTATGTATGGGGACCTGGGCGGGTGGGCGGGGGACAGGTGGGCCCCAGGCAGCTAATGTTCCCCTCCCCCGCCCTGCAGCAGCAGCTCCAAGCCCACCAGCTGTCCCAGCTGCAGGCCCTGGCCCTGCCCTTGACCCCACTACCCGTGGGGCTGCAGCCGCCTTCGCTGCCGGCGGTCAGCGCAGGCACCGGCCTCCTCTCGCTGTCCGCGCT
CircID chr19:3053905|3054152
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MFPSPALQQQLQAHQLSQLQALALPLTPLPVGLQPPSLPAVSAGTGLLSLSAL
Nucleotide Sequence ATGTTCCCCTCCCCCGCCCTGCAGCAGCAGCTCCAAGCCCACCAGCTGTCCCAGCTGCAGGCCCTGGCCCTGCCCTTGACCCCACTACCCGTGGGGCTGCAGCCGCCTTCGCTGCCGGCGGTCAGCGCAGGCACCGGCCTCCTCTCGCTGTCCGCGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab