CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3154808|3155020
Strand +
CircType exon
Host Gene ENSG00000267551.3;
Algorism CIRI2;
Sequence AGGGTAAGCAGCCGTCGAGAGGGGGCTCTGGAGACTGAGACGGGAGTGGGATCAGCAACTGACCAGTTGGGAACTGTGGGCATCACCTCTCATCTCGGGTCTCAGTGTCCTCTGAGCCCTCACTCCATTCATTCGTCTCACTCCTGGGCCACACCTAAAAATCACTTCCTTGGCCCAGACTTCCCCATGATTTCCCAGCCTCTACCTTCACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3154808|3155020 hsa-miR-223-5p 0 0 1
chr19:3154808|3155020 hsa-miR-223-3p 0 0 1
chr19:3154808|3155020 hsa-miR-122-5p 0 0 1
chr19:3154808|3155020 hsa-miR-122-3p 0 0 1
chr19:3154808|3155020 hsa-miR-143-5p 0 0 1
chr19:3154808|3155020 hsa-miR-143-3p 0 0 1
chr19:3154808|3155020 hsa-miR-493-5p 0 0 1
chr19:3154808|3155020 hsa-miR-493-3p 0 0 1
chr19:3154808|3155020 hsa-miR-612 0 0 1
chr19:3154808|3155020 hsa-miR-622 0 0 1
chr19:3154808|3155020 hsa-miR-766-5p 0 0 1
chr19:3154808|3155020 hsa-miR-766-3p 0 0 1
chr19:3154808|3155020 hsa-miR-665 0 1 1
chr19:3154808|3155020 hsa-miR-663b 0 1 1
chr19:3154808|3155020 hsa-miR-1247-5p 0 0 1
chr19:3154808|3155020 hsa-miR-1247-3p 0 0 1
chr19:3154808|3155020 hsa-miR-1197 0 0 1
chr19:3154808|3155020 hsa-miR-139-3p 0 0 1
chr19:3154808|3155020 hsa-miR-1225-3p 0 0 1
chr19:3154808|3155020 hsa-miR-769-5p 0 0 1
chr19:3154808|3155020 hsa-miR-485-5p 1 0 1
chr19:3154808|3155020 hsa-miR-525-5p 0 0 1
chr19:3154808|3155020 hsa-miR-628-5p 0 0 1
chr19:3154808|3155020 hsa-miR-520a-5p 0 0 1
chr19:3154808|3155020 hsa-miR-582-3p 0 0 1
chr19:3154808|3155020 hsa-miR-1308 0 0 1
chr19:3154808|3155020 hsa-miR-644 0 0 1
chr19:3154808|3155020 hsa-miR-1285 0 0 1
chr19:3154808|3155020 hsa-miR-24 0 0 1
chr19:3154808|3155020 hsa-miR-572 1 0 0
chr19:3154808|3155020 hsa-miR-762 1 0 0
chr19:3154808|3155020 hsa-miR-1825 1 0 0
chr19:3154808|3155020 hsa-miR-3132 1 0 0
chr19:3154808|3155020 hsa-miR-3188 1 0 0
chr19:3154808|3155020 hsa-miR-3197 1 0 0
chr19:3154808|3155020 hsa-miR-4329 1 1 0
chr19:3154808|3155020 hsa-miR-3911 1 0 0
chr19:3154808|3155020 hsa-miR-4437 0 1 0
chr19:3154808|3155020 hsa-miR-4443 1 0 0
chr19:3154808|3155020 hsa-miR-4451 1 1 0
chr19:3154808|3155020 hsa-miR-4458 1 0 0
chr19:3154808|3155020 hsa-miR-4498 1 0 0
chr19:3154808|3155020 hsa-miR-4505 1 0 0
chr19:3154808|3155020 hsa-miR-4508 1 0 0
chr19:3154808|3155020 hsa-miR-1587 1 0 0
chr19:3154808|3155020 hsa-miR-4651 1 0 0
chr19:3154808|3155020 hsa-miR-4656 1 0 0
chr19:3154808|3155020 hsa-miR-4688 1 0 0
chr19:3154808|3155020 hsa-miR-4689 1 0 0
chr19:3154808|3155020 hsa-miR-4721 0 1 0
chr19:3154808|3155020 hsa-miR-5694 0 1 0
chr19:3154808|3155020 hsa-miR-5787 1 1 0
chr19:3154808|3155020 hsa-miR-6085 1 1 0
chr19:3154808|3155020 hsa-miR-6086 1 0 0
chr19:3154808|3155020 hsa-miR-6088 1 0 0
chr19:3154808|3155020 hsa-miR-8089 1 0 0
chr19:3154808|3155020 hsa-miR-12114 1 0 0
chr19:3154808|3155020 hsa-miR-12115 1 0 0
chr19:3154808|3155020 hsa-miR-12127 1 0 0
chr19:3154808|3155020 hsa-miR-4433b-3p 1 1 0
chr19:3154808|3155020 hsa-miR-6734-5p 1 0 0
chr19:3154808|3155020 hsa-miR-504-3p 1 0 0
chr19:3154808|3155020 hsa-miR-4433a-3p 1 1 0
chr19:3154808|3155020 hsa-miR-6765-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6825-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6894-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6857-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6799-5p 1 0 0
chr19:3154808|3155020 hsa-miR-1236-5p 1 0 0
chr19:3154808|3155020 hsa-miR-5187-5p 1 1 0
chr19:3154808|3155020 hsa-miR-6515-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6089 1 0 0
chr19:3154808|3155020 hsa-miR-6880-5p 1 0 0
chr19:3154808|3155020 hsa-miR-7847-3p 1 0 0
chr19:3154808|3155020 hsa-miR-6762-3p 0 1 0
chr19:3154808|3155020 hsa-miR-197-5p 1 0 0
chr19:3154808|3155020 hsa-miR-4728-3p 0 1 0
chr19:3154808|3155020 hsa-miR-7108-5p 0 1 0
chr19:3154808|3155020 hsa-miR-3605-5p 1 0 0
chr19:3154808|3155020 hsa-miR-185-3p 1 0 0
chr19:3154808|3155020 hsa-miR-6732-5p 1 0 0
chr19:3154808|3155020 hsa-miR-2467-5p 1 0 0
chr19:3154808|3155020 hsa-miR-2467-3p 1 0 0
chr19:3154808|3155020 hsa-miR-6782-5p 1 1 0
chr19:3154808|3155020 hsa-miR-6514-5p 0 1 0
chr19:3154808|3155020 hsa-miR-30b-3p 1 1 0
chr19:3154808|3155020 hsa-miR-5088-5p 1 1 0
chr19:3154808|3155020 hsa-miR-1226-5p 1 1 0
chr19:3154808|3155020 hsa-miR-204-3p 0 1 0
chr19:3154808|3155020 hsa-miR-4640-5p 1 0 0
chr19:3154808|3155020 hsa-let-7d-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6771-5p 1 0 0
chr19:3154808|3155020 hsa-let-7b-5p 1 0 0
chr19:3154808|3155020 hsa-miR-4732-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6847-5p 1 1 0
chr19:3154808|3155020 hsa-miR-7854-3p 0 1 0
chr19:3154808|3155020 hsa-miR-4446-3p 1 0 0
chr19:3154808|3155020 hsa-miR-202-3p 1 0 0
chr19:3154808|3155020 hsa-miR-6824-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6789-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6866-5p 1 1 0
chr19:3154808|3155020 hsa-miR-664b-5p 1 1 0
chr19:3154808|3155020 hsa-let-7c-5p 1 0 0
chr19:3154808|3155020 hsa-let-7e-5p 1 0 0
chr19:3154808|3155020 hsa-let-7a-5p 1 0 0
chr19:3154808|3155020 hsa-miR-873-3p 1 0 0
chr19:3154808|3155020 hsa-miR-3180-5p 0 1 0
chr19:3154808|3155020 hsa-miR-6832-5p 1 0 0
chr19:3154808|3155020 hsa-miR-3151-3p 0 1 0
chr19:3154808|3155020 hsa-miR-3156-3p 0 1 0
chr19:3154808|3155020 hsa-miR-1207-5p 1 0 0
chr19:3154808|3155020 hsa-miR-4763-3p 1 0 0
chr19:3154808|3155020 hsa-miR-6812-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6816-5p 1 0 0
chr19:3154808|3155020 hsa-miR-5001-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6737-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6743-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6752-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6756-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6803-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6813-5p 1 1 0
chr19:3154808|3155020 hsa-miR-6815-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6819-5p 1 1 0
chr19:3154808|3155020 hsa-miR-6842-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6851-5p 1 0 0
chr19:3154808|3155020 hsa-miR-10401-5p 1 0 0
chr19:3154808|3155020 hsa-miR-11181-3p 1 0 0
chr19:3154808|3155020 hsa-miR-1249-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6763-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6808-5p 1 0 0
chr19:3154808|3155020 hsa-miR-7111-5p 1 0 0
chr19:3154808|3155020 hsa-miR-3127-3p 0 1 0
chr19:3154808|3155020 hsa-miR-3620-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6780b-5p 1 1 0
chr19:3154808|3155020 hsa-miR-1909-3p 1 0 0
chr19:3154808|3155020 hsa-miR-4649-5p 1 0 0
chr19:3154808|3155020 hsa-miR-4685-5p 1 0 0
chr19:3154808|3155020 hsa-miR-4726-5p 1 0 0
chr19:3154808|3155020 hsa-miR-4745-5p 1 1 0
chr19:3154808|3155020 hsa-miR-6735-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6883-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6889-5p 1 0 0
chr19:3154808|3155020 hsa-miR-3187-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6831-5p 1 1 0
chr19:3154808|3155020 hsa-miR-939-5p 1 0 0
chr19:3154808|3155020 hsa-miR-4758-5p 1 0 0
chr19:3154808|3155020 hsa-miR-1914-3p 1 0 0
chr19:3154808|3155020 hsa-miR-7151-3p 1 0 0
chr19:3154808|3155020 hsa-miR-3689d 1 0 0
chr19:3154808|3155020 hsa-miR-3529-5p 1 0 0
chr19:3154808|3155020 hsa-miR-6884-5p 1 1 0
chr19:3154808|3155020 hsa-miR-340-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:3154808|3155020
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence METETGVGSATDQLGTVGITSHLGSQCPLSPHSIHSSHSWATPKNHFLGPDFPMISQPLPSL
Nucleotide Sequence CTGGAGACTGAGACGGGAGTGGGATCAGCAACTGACCAGTTGGGAACTGTGGGCATCACCTCTCATCTCGGGTCTCAGTGTCCTCTGAGCCCTCACTCCATTCATTCGTCTCACTCCTGGGCCACACCTAAAAATCACTTCCTTGGCCCAGACTTCCCCATGATTTCCCAGCCTCTACCTTCACTC
CircID chr19:3154808|3155020
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MRREWDQQLTSWELWASPLISGLSVL
Nucleotide Sequence CTGAGACGGGAGTGGGATCAGCAACTGACCAGTTGGGAACTGTGGGCATCACCTCTCATCTCGGGTCTCAGTGTCCTCTGA
CircID chr19:3154808|3155020
ORF Type ORF3
Protein Length 48
Nucleotide Length 147
Protein Sequence MGNHGEVWAKEVIFRCGPGVRRMNGVRAQRTLRPEMRGDAHSSQLVSC
Nucleotide Sequence CTGGGAAATCATGGGGAAGTCTGGGCCAAGGAAGTGATTTTTAGGTGTGGCCCAGGAGTGAGACGAATGAATGGAGTGAGGGCTCAGAGGACACTGAGACCCGAGATGAGAGGTGATGCCCACAGTTCCCAACTGGTCAGTTGCTGA
CircID chr19:3154808|3155020
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MPTVPNWSVADPTPVSVSRAPSRRLLT
Nucleotide Sequence ATGCCCACAGTTCCCAACTGGTCAGTTGCTGATCCCACTCCCGTCTCAGTCTCCAGAGCCCCCTCTCGACGGCTGCTTACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab