CircNet

General Information

circRNA Basic Information

CircID	chr19:34194478\|34215661
Strand	+
CircType	exon
Host Gene	ENSG00000257103.8;
Algorism	find_circ;CIRI2;DCC;
Sequence	TTCGATCCTTTGGTACAGAAGACAGACCGACAGATCGTCCAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCACCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAGTCCTCACTAGGCTCATCGACTTCTTCATTCCAGTCCATGGGTTCTTATGGACCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCGAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTGCTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGTGCGGTTGGTTCTGCCTTTACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAGGTCGCTCAAGCCCTCAGTTAGACCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTGCAGACCGCCTCAGCCCACTTACCTGCTCCAGCAGCTGTTGGGAGAAGGAGTCCTGTATCAACCAGGCCTTTGCCATCTGCCAGCCAAAAGGCAGGAGAGAATCAGGAGCACAGGCGAGCTGAAGTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAATGATAACAAGAGACAAGTAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr19:34194478\|34215661	hsa-miR-143-5p	0	0	1
chr19:34194478\|34215661	hsa-miR-143-3p	0	0	1
chr19:34194478\|34215661	hsa-miR-452-5p	0	0	1
chr19:34194478\|34215661	hsa-miR-452-3p	0	0	1
chr19:34194478\|34215661	hsa-miR-498-5p	0	0	1
chr19:34194478\|34215661	hsa-miR-498-3p	0	0	1
chr19:34194478\|34215661	hsa-miR-561-5p	0	0	1
chr19:34194478\|34215661	hsa-miR-561-3p	0	0	1
chr19:34194478\|34215661	hsa-miR-758-5p	0	0	1
chr19:34194478\|34215661	hsa-miR-758-3p	0	0	1
chr19:34194478\|34215661	hsa-miR-1264	0	0	1
chr19:34194478\|34215661	hsa-miR-1263	0	0	1
chr19:34194478\|34215661	hsa-miR-22-3p	0	1	1
chr19:34194478\|34215661	hsa-miR-150-5p	0	1	1
chr19:34194478\|34215661	hsa-miR-501-5p	0	0	1
chr19:34194478\|34215661	hsa-miR-1207-3p	0	0	1
chr19:34194478\|34215661	hsa-miR-140-3p	0	0	1
chr19:34194478\|34215661	hsa-miR-128	0	0	1
chr19:34194478\|34215661	hsa-miR-9	0	0	1
chr19:34194478\|34215661	hsa-miR-323-3p	0	0	1
chr19:34194478\|34215661	hsa-miR-6088	1	0	0
chr19:34194478\|34215661	hsa-miR-134-3p	1	0	0
chr19:34194478\|34215661	hsa-miR-150-3p	0	1	0
chr19:34194478\|34215661	hsa-miR-1972	1	0	0
chr19:34194478\|34215661	hsa-miR-6807-5p	0	1	0
chr19:34194478\|34215661	hsa-miR-4753-5p	0	1	0
chr19:34194478\|34215661	hsa-miR-6732-5p	1	0	0
chr19:34194478\|34215661	hsa-miR-4640-5p	1	0	0
chr19:34194478\|34215661	hsa-miR-7161-3p	1	0	0
chr19:34194478\|34215661	hsa-miR-4743-5p	1	0	0
chr19:34194478\|34215661	hsa-miR-4787-5p	1	0	0
chr19:34194478\|34215661	hsa-miR-3922-5p	1	1	0
chr19:34194478\|34215661	hsa-miR-6801-5p	1	0	0
chr19:34194478\|34215661	hsa-miR-216a-3p	0	1	0
chr19:34194478\|34215661	hsa-miR-3664-3p	0	1	0
chr19:34194478\|34215661	hsa-miR-5585-5p	0	1	0
chr19:34194478\|34215661	hsa-miR-6778-5p	1	1	0
chr19:34194478\|34215661	hsa-miR-6752-5p	1	0	0
chr19:34194478\|34215661	hsa-miR-6803-5p	1	0	0
chr19:34194478\|34215661	hsa-miR-6751-5p	1	0	0
chr19:34194478\|34215661	hsa-miR-4726-5p	1	0	0
chr19:34194478\|34215661	hsa-miR-548aa	0	1	0
chr19:34194478\|34215661	hsa-miR-548t-3p	0	1	0
chr19:34194478\|34215661	hsa-miR-548o-3p	0	1	0
chr19:34194478\|34215661	hsa-miR-548at-3p	0	1	0
chr19:34194478\|34215661	hsa-miR-548d-3p	0	1	0
chr19:34194478\|34215661	hsa-miR-548bb-3p	0	1	0

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr19:34194478\|34215661
ORF Type	ORF1
Protein Length	153
Nucleotide Length	459
Protein Sequence	MGSYGPFGRMPTYSQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRRAEVHKVSRPENEQLRNDNKRQV
Nucleotide Sequence	ATGGGTTCTTATGGACCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCGAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTGCTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGTGCGGTTGGTTCTGCCTTTACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAGGTCGCTCAAGCCCTCAGTTAGACCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTGCAGACCGCCTCAGCCCACTTACCTGCTCCAGCAGCTGTTGGGAGAAGGAGTCCTGTATCAACCAGGCCTTTGCCATCTGCCAGCCAAAAGGCAGGAGAGAATCAGGAGCACAGGCGAGCTGAAGTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAATGATAACAAGAGACAAGTA

CircID	chr19:34194478\|34215661
ORF Type	ORF2
Protein Length	59
Nucleotide Length	177
Protein Sequence	MAKAWLIQDSFSQQLLEQVSGLRRSALLVPWLGFFSKGLTEGLSDLEITVFLEILYPV*
Nucleotide Sequence	ATGGCAAAGGCCTGGTTGATACAGGACTCCTTCTCCCAACAGCTGCTGGAGCAGGTAAGTGGGCTGAGGCGGTCTGCACTGCTTGTTCCATGGTTGGGCTTTTTCTCAAAGGGTCTAACTGAGGGCTTGAGCGACCTTGAGATAACTGTGTTTTTAGAGATCTTGTATCCTGTGTAA

CircID	chr19:34194478\|34215661
ORF Type	ORF3
Protein Length	40
Nucleotide Length	120
Protein Sequence	MKSLNTLYSVGVTLKTLLFVSHQNHSVLCLKTQLLFSPH*
Nucleotide Sequence	ATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCACCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAGTCCTCACTAG

CircID	chr19:34194478\|34215661
ORF Type	ORF4
Protein Length	31
Nucleotide Length	93
Protein Sequence	MSLPRNIMYSKTSSRGGIGRSVGLSSVPKDR
Nucleotide Sequence	ATGTCACTCCCACGGAATATAATGTATTCAAAGACTTCATCTCGAGGTGGTATTGGACGATCTGTCGGTCTGTCTTCTGTACCAAAGGATCGA

CircID	chr19:34194478\|34215661
ORF Type	ORF5
Protein Length	76
Nucleotide Length	228
Protein Sequence	VFFASRPSYCSVLTRLIDFFIPVHGFLWTFRQDAHIQSVQSEFLSWAAVWCCWCCWKLFDILWNRNIKQWYLTPK*
Nucleotide Sequence	GTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAGTCCTCACTAGGCTCATCGACTTCTTCATTCCAGTCCATGGGTTCTTATGGACCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCGAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTGCTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAG

CircID	chr19:34194478\|34215661
ORF Type	ORF6
Protein Length	57
Nucleotide Length	171
Protein Sequence	DNCVFRDLVSCVKAEPTALLWGKVPLFDVSVPKDVKELPATPTAPNCCPTKELGLN*
Nucleotide Sequence	GATAACTGTGTTTTTAGAGATCTTGTATCCTGTGTAAAGGCAGAACCAACCGCACTACTTTGGGGTAAGGTACCACTGTTTGATGTTTCTGTTCCAAAGGATGTCAAAGAGCTTCCAGCAACACCAACAGCACCAAACTGCTGCCCAACTAAGGAACTCGGACTGAACTGA

CircID	chr19:34194478\|34215661
ORF Type	ORF1
Protein Length	63
Nucleotide Length	189
Protein Sequence	MALKLCVLQLNNSWVLRQRTLWFWWLTNSKVFNVTPTEYNVFKDFISRWYWTICRSVFCTKGS
Nucleotide Sequence	CTGGCCTTGAAACTTTGTGTACTTCAGCTGAACAATAGCTGGGTCTTGAGGCAAAGAACACTGTGGTTTTGGTGGCTCACAAACAGTAAGGTCTTTAATGTCACTCCCACGGAATATAATGTATTCAAAGACTTCATCTCGAGGTGGTATTGGACGATCTGTCGGTCTGTCTTCTGTACCAAAGGATCG

CircID	chr19:34194478\|34215661
ORF Type	ORF2
Protein Length	31
Nucleotide Length	93
Protein Sequence	MSLPRNIMYSKTSSRGGIGRSVGLSSVPKDR
Nucleotide Sequence	ATGTCACTCCCACGGAATATAATGTATTCAAAGACTTCATCTCGAGGTGGTATTGGACGATCTGTCGGTCTGTCTTCTGTACCAAAGGATCGA

CircID	chr19:34194478\|34215661
ORF Type	ORF3
Protein Length	52
Nucleotide Length	159
Protein Sequence	MVQKTDRQIVQYHLEMKSLNTLYSVGVTLKTLLFVSHQNHSVLCLKTQLLFS
Nucleotide Sequence	TTGGTACAGAAGACAGACCGACAGATCGTCCAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCACCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAGCTGA

CircID	chr19:34194478\|34215661
ORF Type	ORF4
Protein Length	30
Nucleotide Length	93
Protein Sequence	MPQDPAIVQLKYTKFQGQKMSNSEMITRDK
Nucleotide Sequence	TTGCCTCAAGACCCAGCTATTGTTCAGCTGAAGTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAATGATAACAAGAGACAAGTAG

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr19:34194478\|34215661	SLBP	0	0	1
chr19:34194478\|34215661	MOV10	2	1	1
chr19:34194478\|34215661	ELAVL1	5	6	7
chr19:34194478\|34215661	NCBP3	1	0	1
chr19:34194478\|34215661	SF3B4	1	1	0
chr19:34194478\|34215661	FAM120A	0	2	0
chr19:34194478\|34215661	PRPF8	0	1	0
chr19:34194478\|34215661	YTHDF3	1	0	0
chr19:34194478\|34215661	CNBP	0	0	2
chr19:34194478\|34215661	YTHDF1	8	0	0
chr19:34194478\|34215661	UPF1	3	0	1
chr19:34194478\|34215661	SRSF10	0	0	2
chr19:34194478\|34215661	TAF15	4	0	0
chr19:34194478\|34215661	CAPRIN1	2	0	0
chr19:34194478\|34215661	FMR1	0	0	19
chr19:34194478\|34215661	CPSF6	3	0	0
chr19:34194478\|34215661	NUDT21	5	0	0
chr19:34194478\|34215661	CSTF2	5	0	0
chr19:34194478\|34215661	CPSF3	1	0	0
chr19:34194478\|34215661	RBM15B	11	0	0
chr19:34194478\|34215661	FUS	1	0	0
chr19:34194478\|34215661	CPSF7	8	0	0
chr19:34194478\|34215661	SRSF1	2	0	1
chr19:34194478\|34215661	NOP58	4	3	11
chr19:34194478\|34215661	U2AF1	0	0	1
chr19:34194478\|34215661	ADAR	1	0	0
chr19:34194478\|34215661	U2AF2	20	6	13
chr19:34194478\|34215661	NOP56	2	3	1
chr19:34194478\|34215661	DDX54	0	0	17
chr19:34194478\|34215661	RBM10	3	5	0
chr19:34194478\|34215661	HNRNPL	2	0	0
chr19:34194478\|34215661	HNRNPM	0	1	0
chr19:34194478\|34215661	RBM15	2	0	0
chr19:34194478\|34215661	SF3A3	2	0	0
chr19:34194478\|34215661	FIP1L1	5	0	0
chr19:34194478\|34215661	PTBP1	1	0	0
chr19:34194478\|34215661	HNRNPC	2	0	0
chr19:34194478\|34215661	TRA2A	0	0	3
chr19:34194478\|34215661	ATXN2	1	0	0
chr19:34194478\|34215661	DHX9	0	3	1
chr19:34194478\|34215661	VIM	0	1	0
chr19:34194478\|34215661	HNRNPA1	5	1	0
chr19:34194478\|34215661	DDX3X	9	0	2
chr19:34194478\|34215661	ZC3H7B	11	0	3
chr19:34194478\|34215661	MSI2	0	0	1
chr19:34194478\|34215661	ACIN1	0	0	5
chr19:34194478\|34215661	LIN28B	6	1	8
chr19:34194478\|34215661	LIN28A	0	0	3
chr19:34194478\|34215661	FXR1	2	0	2
chr19:34194478\|34215661	FXR2	0	1	1
chr19:34194478\|34215661	NUMA1	0	1	0
chr19:34194478\|34215661	SND1	0	1	0
chr19:34194478\|34215661	IGF2BP1	11	0	11
chr19:34194478\|34215661	BUD13	1	0	1
chr19:34194478\|34215661	IGF2BP3	7	0	8
chr19:34194478\|34215661	IGF2BP2	10	4	21
chr19:34194478\|34215661	FTO	0	1	0
chr19:34194478\|34215661	TARDBP	6	1	0
chr19:34194478\|34215661	YTHDC1	3	0	0
chr19:34194478\|34215661	DICER1	0	1	2
chr19:34194478\|34215661	RBFOX2	0	1	0
chr19:34194478\|34215661	RBM47	0	1	4
chr19:34194478\|34215661	YTHDF2	5	0	1
chr19:34194478\|34215661	CSTF2T	4	0	3
chr19:34194478\|34215661	RTCB	2	0	0
chr19:34194478\|34215661	TARBP2	0	1	0
chr19:34194478\|34215661	WDR33	2	0	0
chr19:34194478\|34215661	DKC1	0	0	1
chr19:34194478\|34215661	FBL	3	2	7
chr19:34194478\|34215661	AGO1	0	0	3
chr19:34194478\|34215661	EWSR1	1	0	0
chr19:34194478\|34215661	EIF4A3	4	1	9
chr19:34194478\|34215661	AGO2	0	0	5

CircRNA Information