CircRNA Information

General Information
circRNA Basic Information
CircID chr19:34385498|34385650
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGGCTTGACTATGACTTTTTAGGTCTCATGAACACACTCAGCTTTGTGAAGCTGCCCTGATCCTGGCTCCAAAGACCTTACCTGCCAAACCCTGTTCTACACACCTGTGTTTAACTCCCGTTCTTCAGACCTGATAGACCCGAAGATGTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:34385498|34385650 hsa-miR-96-5p 0 0 1
chr19:34385498|34385650 hsa-miR-96-3p 0 0 1
chr19:34385498|34385650 hsa-miR-182-5p 0 0 1
chr19:34385498|34385650 hsa-miR-182-3p 0 0 1
chr19:34385498|34385650 hsa-miR-320a-5p 0 0 1
chr19:34385498|34385650 hsa-miR-320a-3p 0 0 1
chr19:34385498|34385650 hsa-miR-433-5p 0 0 1
chr19:34385498|34385650 hsa-miR-433-3p 0 0 1
chr19:34385498|34385650 hsa-miR-552-5p 0 0 1
chr19:34385498|34385650 hsa-miR-552-3p 0 0 1
chr19:34385498|34385650 hsa-miR-1271-5p 0 0 1
chr19:34385498|34385650 hsa-miR-1271-3p 0 0 1
chr19:34385498|34385650 hsa-miR-1206 0 0 1
chr19:34385498|34385650 hsa-miR-513b-5p 0 0 1
chr19:34385498|34385650 hsa-miR-513b-3p 0 0 1
chr19:34385498|34385650 hsa-miR-769-5p 0 0 1
chr19:34385498|34385650 hsa-miR-574-5p 0 1 1
chr19:34385498|34385650 hsa-miR-1207-5p 1 0 1
chr19:34385498|34385650 hsa-miR-320b 0 0 1
chr19:34385498|34385650 hsa-miR-320c 0 0 1
chr19:34385498|34385650 hsa-miR-320d 0 0 1
chr19:34385498|34385650 hsa-miR-9 0 0 1
chr19:34385498|34385650 hsa-miR-768-5p 0 0 1
chr19:34385498|34385650 hsa-miR-1182 1 0 0
chr19:34385498|34385650 hsa-miR-3147 1 0 0
chr19:34385498|34385650 hsa-miR-3154 1 0 0
chr19:34385498|34385650 hsa-miR-3665 1 0 0
chr19:34385498|34385650 hsa-miR-4658 0 1 0
chr19:34385498|34385650 hsa-miR-4688 1 0 0
chr19:34385498|34385650 hsa-miR-4736 1 0 0
chr19:34385498|34385650 hsa-miR-7150 1 0 0
chr19:34385498|34385650 hsa-miR-8077 0 1 0
chr19:34385498|34385650 hsa-miR-11399 0 1 0
chr19:34385498|34385650 hsa-miR-12128 1 0 0
chr19:34385498|34385650 hsa-miR-135a-3p 1 0 0
chr19:34385498|34385650 hsa-miR-629-5p 1 0 0
chr19:34385498|34385650 hsa-miR-125b-1-3p 1 0 0
chr19:34385498|34385650 hsa-miR-6825-5p 1 0 0
chr19:34385498|34385650 hsa-miR-125a-3p 1 1 0
chr19:34385498|34385650 hsa-miR-3934-5p 0 1 0
chr19:34385498|34385650 hsa-miR-505-5p 0 1 0
chr19:34385498|34385650 hsa-miR-6727-5p 1 0 0
chr19:34385498|34385650 hsa-miR-6881-5p 1 0 0
chr19:34385498|34385650 hsa-miR-6874-5p 0 1 0
chr19:34385498|34385650 hsa-miR-1226-5p 1 0 0
chr19:34385498|34385650 hsa-miR-6740-5p 1 0 0
chr19:34385498|34385650 hsa-miR-1229-5p 1 0 0
chr19:34385498|34385650 hsa-miR-4640-5p 1 0 0
chr19:34385498|34385650 hsa-miR-6753-5p 1 0 0
chr19:34385498|34385650 hsa-miR-3127-5p 1 1 0
chr19:34385498|34385650 hsa-miR-6823-5p 1 1 0
chr19:34385498|34385650 hsa-miR-4732-5p 1 1 0
chr19:34385498|34385650 hsa-miR-6749-5p 1 0 0
chr19:34385498|34385650 hsa-miR-193a-5p 1 1 0
chr19:34385498|34385650 hsa-miR-4776-5p 1 0 0
chr19:34385498|34385650 hsa-miR-331-5p 1 0 0
chr19:34385498|34385650 hsa-miR-493-3p 1 0 0
chr19:34385498|34385650 hsa-miR-1273h-5p 1 0 0
chr19:34385498|34385650 hsa-miR-4763-3p 1 0 0
chr19:34385498|34385650 hsa-miR-6893-5p 1 0 0
chr19:34385498|34385650 hsa-miR-6752-5p 1 0 0
chr19:34385498|34385650 hsa-miR-6722-3p 1 0 0
chr19:34385498|34385650 hsa-miR-6780b-5p 1 0 0
chr19:34385498|34385650 hsa-miR-4632-5p 1 0 0
chr19:34385498|34385650 hsa-miR-4725-3p 1 0 0
chr19:34385498|34385650 hsa-miR-3187-5p 1 0 0
chr19:34385498|34385650 hsa-miR-1266-5p 1 0 0
chr19:34385498|34385650 hsa-miR-365b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:34385498|34385650
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MILAPKTLPAKPCSTHLCLTPVLQT
Nucleotide Sequence CTGATCCTGGCTCCAAAGACCTTACCTGCCAAACCCTGTTCTACACACCTGTGTTTAACTCCCGTTCTTCAGACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab