CircRNA Information

General Information
circRNA Basic Information
CircID chr19:35009237|35009912
Strand +
CircType exon
Host Gene ENSG00000089351.13;
Algorism CIRI2;
Sequence GCTGCTTATAAGTGGGGCTCAGCATACTGTACCAGCTCTGCATCTTCTGCAAAGAAAAGGAGAGGAGTCAGGATGAGCCCCTAGATCACCGGCCAGCCCCCACTAGCCCTCTCCCCACCCCACCTGGGCTTGCACCAACCTTGCTGTTGCGGATGAAGTTCCGGCTGCCTAGGCTCTGGGTGCTGGGGGTCCCAGGCACCCCACCCTTCTCTGAGGAGCTATCTGATCCCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:35009237|35009912 hsa-miR-144-5p 0 0 1
chr19:35009237|35009912 hsa-miR-144-3p 0 0 1
chr19:35009237|35009912 hsa-miR-383-5p 0 0 1
chr19:35009237|35009912 hsa-miR-383-3p 0 0 1
chr19:35009237|35009912 hsa-miR-345-5p 0 0 1
chr19:35009237|35009912 hsa-miR-345-3p 0 0 1
chr19:35009237|35009912 hsa-miR-608 1 1 1
chr19:35009237|35009912 hsa-miR-661 0 1 1
chr19:35009237|35009912 hsa-miR-298 0 0 1
chr19:35009237|35009912 hsa-miR-939-5p 0 0 1
chr19:35009237|35009912 hsa-miR-939-3p 0 0 1
chr19:35009237|35009912 hsa-miR-940 0 0 1
chr19:35009237|35009912 hsa-miR-1225-3p 0 0 1
chr19:35009237|35009912 hsa-miR-491-5p 0 0 1
chr19:35009237|35009912 hsa-miR-361-3p 0 0 1
chr19:35009237|35009912 hsa-miR-342-5p 0 0 1
chr19:35009237|35009912 hsa-miR-1233 0 0 1
chr19:35009237|35009912 hsa-miR-550 0 0 1
chr19:35009237|35009912 hsa-miR-1254 0 0 1
chr19:35009237|35009912 hsa-miR-101 0 0 1
chr19:35009237|35009912 hsa-miR-637 1 1 0
chr19:35009237|35009912 hsa-miR-638 1 0 0
chr19:35009237|35009912 hsa-miR-762 1 0 0
chr19:35009237|35009912 hsa-miR-2861 1 0 0
chr19:35009237|35009912 hsa-miR-3135a 0 1 0
chr19:35009237|35009912 hsa-miR-3175 0 1 0
chr19:35009237|35009912 hsa-miR-3621 1 0 0
chr19:35009237|35009912 hsa-miR-4447 0 1 0
chr19:35009237|35009912 hsa-miR-4466 1 0 0
chr19:35009237|35009912 hsa-miR-4488 1 0 0
chr19:35009237|35009912 hsa-miR-4489 1 0 0
chr19:35009237|35009912 hsa-miR-4498 1 1 0
chr19:35009237|35009912 hsa-miR-4507 1 0 0
chr19:35009237|35009912 hsa-miR-4508 1 0 0
chr19:35009237|35009912 hsa-miR-4516 0 1 0
chr19:35009237|35009912 hsa-miR-1587 1 0 0
chr19:35009237|35009912 hsa-miR-4651 1 1 0
chr19:35009237|35009912 hsa-miR-4663 0 1 0
chr19:35009237|35009912 hsa-miR-4689 1 0 0
chr19:35009237|35009912 hsa-miR-4706 1 0 0
chr19:35009237|35009912 hsa-miR-4741 1 0 0
chr19:35009237|35009912 hsa-miR-5572 1 0 0
chr19:35009237|35009912 hsa-miR-5787 1 0 0
chr19:35009237|35009912 hsa-miR-6085 1 0 0
chr19:35009237|35009912 hsa-miR-6132 1 0 0
chr19:35009237|35009912 hsa-miR-8085 0 1 0
chr19:35009237|35009912 hsa-miR-8089 0 1 0
chr19:35009237|35009912 hsa-miR-92a-2-5p 0 1 0
chr19:35009237|35009912 hsa-miR-6747-5p 1 0 0
chr19:35009237|35009912 hsa-miR-671-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6894-5p 0 1 0
chr19:35009237|35009912 hsa-miR-4687-3p 1 0 0
chr19:35009237|35009912 hsa-miR-766-3p 0 1 0
chr19:35009237|35009912 hsa-miR-4768-3p 0 1 0
chr19:35009237|35009912 hsa-miR-6741-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6842-3p 1 0 0
chr19:35009237|35009912 hsa-miR-197-5p 1 0 0
chr19:35009237|35009912 hsa-miR-4728-3p 0 1 0
chr19:35009237|35009912 hsa-miR-6742-5p 1 1 0
chr19:35009237|35009912 hsa-miR-6796-5p 1 0 0
chr19:35009237|35009912 hsa-miR-185-3p 1 1 0
chr19:35009237|35009912 hsa-miR-6829-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6782-5p 1 1 0
chr19:35009237|35009912 hsa-miR-6735-3p 1 0 0
chr19:35009237|35009912 hsa-miR-6786-5p 1 0 0
chr19:35009237|35009912 hsa-miR-5088-5p 1 0 0
chr19:35009237|35009912 hsa-miR-4793-5p 0 1 0
chr19:35009237|35009912 hsa-miR-4640-5p 1 0 0
chr19:35009237|35009912 hsa-miR-296-3p 1 0 0
chr19:35009237|35009912 hsa-miR-6823-5p 0 1 0
chr19:35009237|35009912 hsa-miR-485-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6847-5p 0 1 0
chr19:35009237|35009912 hsa-miR-4743-5p 1 0 0
chr19:35009237|35009912 hsa-miR-4446-3p 1 0 0
chr19:35009237|35009912 hsa-miR-149-3p 1 0 0
chr19:35009237|35009912 hsa-miR-378a-5p 0 1 0
chr19:35009237|35009912 hsa-miR-6781-5p 0 1 0
chr19:35009237|35009912 hsa-miR-194-3p 1 0 0
chr19:35009237|35009912 hsa-miR-6870-3p 0 1 0
chr19:35009237|35009912 hsa-miR-3678-3p 0 1 0
chr19:35009237|35009912 hsa-miR-3120-3p 0 1 0
chr19:35009237|35009912 hsa-miR-4727-3p 1 1 0
chr19:35009237|35009912 hsa-miR-6871-3p 0 1 0
chr19:35009237|35009912 hsa-miR-4763-3p 1 0 0
chr19:35009237|35009912 hsa-miR-6769b-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6787-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6812-5p 1 1 0
chr19:35009237|35009912 hsa-miR-6870-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6726-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6737-5p 0 1 0
chr19:35009237|35009912 hsa-miR-6752-5p 0 1 0
chr19:35009237|35009912 hsa-miR-6756-5p 1 1 0
chr19:35009237|35009912 hsa-miR-6803-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6813-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6819-5p 1 1 0
chr19:35009237|35009912 hsa-miR-6751-5p 1 1 0
chr19:35009237|35009912 hsa-miR-6763-5p 1 1 0
chr19:35009237|35009912 hsa-miR-6779-5p 1 0 0
chr19:35009237|35009912 hsa-miR-3620-5p 1 0 0
chr19:35009237|35009912 hsa-miR-4728-5p 1 0 0
chr19:35009237|35009912 hsa-miR-5196-5p 1 0 0
chr19:35009237|35009912 hsa-miR-1237-5p 1 0 0
chr19:35009237|35009912 hsa-miR-4745-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6729-5p 1 0 0
chr19:35009237|35009912 hsa-miR-675-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6846-5p 1 1 0
chr19:35009237|35009912 hsa-miR-6848-5p 1 1 0
chr19:35009237|35009912 hsa-miR-4697-5p 1 0 0
chr19:35009237|35009912 hsa-miR-4758-5p 1 0 0
chr19:35009237|35009912 hsa-miR-4769-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6511b-5p 0 1 0
chr19:35009237|35009912 hsa-miR-3940-5p 1 0 0
chr19:35009237|35009912 hsa-miR-6731-5p 0 1 0
chr19:35009237|35009912 hsa-miR-6856-5p 0 1 0
chr19:35009237|35009912 hsa-miR-1914-3p 1 0 0
chr19:35009237|35009912 hsa-miR-6766-5p 0 1 0
chr19:35009237|35009912 hsa-miR-6785-5p 1 0 0
chr19:35009237|35009912 hsa-miR-18b-5p 0 1 0
chr19:35009237|35009912 hsa-miR-6751-3p 0 1 0
chr19:35009237|35009912 hsa-miR-1295b-5p 0 1 0
chr19:35009237|35009912 hsa-miR-6764-5p 0 1 0
chr19:35009237|35009912 hsa-miR-3922-3p 1 0 0
chr19:35009237|35009912 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:35009237|35009912
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence MYQLCIFCKEKERSQDEPLDHRPAPTSPLPTPPGLAPTLLLRMKFRLPRLWVLGVPGTPPFSEELSDP
Nucleotide Sequence CTGTACCAGCTCTGCATCTTCTGCAAAGAAAAGGAGAGGAGTCAGGATGAGCCCCTAGATCACCGGCCAGCCCCCACTAGCCCTCTCCCCACCCCACCTGGGCTTGCACCAACCTTGCTGTTGCGGATGAAGTTCCGGCTGCCTAGGCTCTGGGTGCTGGGGGTCCCAGGCACCCCACCCTTCTCTGAGGAGCTATCTGATCCC
CircID chr19:35009237|35009912
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MAGDLGAHPDSSPFLCRRCRAGTVC
Nucleotide Sequence CTGGCCGGTGATCTAGGGGCTCATCCTGACTCCTCTCCTTTTCTTTGCAGAAGATGCAGAGCTGGTACAGTATGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab