CircRNA Information

General Information
circRNA Basic Information
CircID chr19:35019204|35019441
Strand +
CircType exon
Host Gene ENSG00000089351.13;
Algorism CIRI2;
Sequence CTCGGAGTCCACCACACACCCGCCGGCCTGGGGGCCGCGCCGGAACAGCGTCTGCAGGGACAGAGCCGGAGAAGTCAGGGCCACCCCACTCACCCAGCTGCCCCACCCACTCGGCTGCCCCACCTGGCCCACCTGTGTCTCCACCACGGAGGCGCTCTTGGGGCCCAGTGGGTTGCTGATGGGGATGGTGTACGTCAGCACCCGGCGCTGGTGGCACTTGCTGTCCCCACTCCAGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:35019204|35019441 hsa-miR-122-5p 0 0 1
chr19:35019204|35019441 hsa-miR-122-3p 0 0 1
chr19:35019204|35019441 hsa-miR-328-5p 0 0 1
chr19:35019204|35019441 hsa-miR-328-3p 0 0 1
chr19:35019204|35019441 hsa-miR-335-5p 0 0 1
chr19:35019204|35019441 hsa-miR-335-3p 0 0 1
chr19:35019204|35019441 hsa-miR-545-5p 0 0 1
chr19:35019204|35019441 hsa-miR-545-3p 0 0 1
chr19:35019204|35019441 hsa-miR-552-5p 0 0 1
chr19:35019204|35019441 hsa-miR-552-3p 0 0 1
chr19:35019204|35019441 hsa-miR-608 1 1 1
chr19:35019204|35019441 hsa-miR-617 0 0 1
chr19:35019204|35019441 hsa-miR-541-5p 0 0 1
chr19:35019204|35019441 hsa-miR-541-3p 0 0 1
chr19:35019204|35019441 hsa-miR-760 0 1 1
chr19:35019204|35019441 hsa-miR-1180-5p 0 0 1
chr19:35019204|35019441 hsa-miR-1180-3p 0 0 1
chr19:35019204|35019441 hsa-miR-1226-5p 0 0 1
chr19:35019204|35019441 hsa-miR-1226-3p 0 0 1
chr19:35019204|35019441 hsa-miR-1227-5p 0 0 1
chr19:35019204|35019441 hsa-miR-1227-3p 0 0 1
chr19:35019204|35019441 hsa-miR-663b 1 1 1
chr19:35019204|35019441 hsa-miR-1291 0 1 1
chr19:35019204|35019441 hsa-miR-1293 0 0 1
chr19:35019204|35019441 hsa-miR-1262 0 0 1
chr19:35019204|35019441 hsa-miR-1281 0 0 1
chr19:35019204|35019441 hsa-miR-296-5p 0 0 1
chr19:35019204|35019441 hsa-miR-491-5p 0 0 1
chr19:35019204|35019441 hsa-miR-486-3p 1 1 1
chr19:35019204|35019441 hsa-miR-654-5p 0 0 1
chr19:35019204|35019441 hsa-miR-339-3p 0 1 1
chr19:35019204|35019441 hsa-miR-361-3p 0 1 1
chr19:35019204|35019441 hsa-miR-1207-3p 0 0 1
chr19:35019204|35019441 hsa-miR-331-3p 0 0 1
chr19:35019204|35019441 hsa-miR-628-5p 0 0 1
chr19:35019204|35019441 hsa-miR-342-5p 0 0 1
chr19:35019204|35019441 hsa-miR-644 0 0 1
chr19:35019204|35019441 hsa-miR-886-3p 0 0 1
chr19:35019204|35019441 hsa-miR-147 0 0 1
chr19:35019204|35019441 hsa-miR-661 1 0 0
chr19:35019204|35019441 hsa-miR-663a 1 0 0
chr19:35019204|35019441 hsa-miR-762 1 0 0
chr19:35019204|35019441 hsa-miR-1469 1 1 0
chr19:35019204|35019441 hsa-miR-3147 1 1 0
chr19:35019204|35019441 hsa-miR-3196 1 0 0
chr19:35019204|35019441 hsa-miR-4308 0 1 0
chr19:35019204|35019441 hsa-miR-3943 1 0 0
chr19:35019204|35019441 hsa-miR-4455 0 1 0
chr19:35019204|35019441 hsa-miR-4466 1 0 0
chr19:35019204|35019441 hsa-miR-4479 0 1 0
chr19:35019204|35019441 hsa-miR-4481 0 1 0
chr19:35019204|35019441 hsa-miR-4488 1 0 0
chr19:35019204|35019441 hsa-miR-4507 1 0 0
chr19:35019204|35019441 hsa-miR-3960 1 0 0
chr19:35019204|35019441 hsa-miR-4651 1 0 0
chr19:35019204|35019441 hsa-miR-4688 1 0 0
chr19:35019204|35019441 hsa-miR-5090 1 1 0
chr19:35019204|35019441 hsa-miR-5787 1 0 0
chr19:35019204|35019441 hsa-miR-8072 1 0 0
chr19:35019204|35019441 hsa-miR-8077 1 0 0
chr19:35019204|35019441 hsa-miR-12121 1 0 0
chr19:35019204|35019441 hsa-miR-92a-2-5p 0 1 0
chr19:35019204|35019441 hsa-miR-6861-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6822-3p 1 0 0
chr19:35019204|35019441 hsa-miR-7114-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6089 1 0 0
chr19:35019204|35019441 hsa-miR-6880-5p 0 1 0
chr19:35019204|35019441 hsa-miR-6741-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6759-5p 1 0 0
chr19:35019204|35019441 hsa-miR-5589-5p 0 1 0
chr19:35019204|35019441 hsa-miR-6776-5p 1 1 0
chr19:35019204|35019441 hsa-miR-6742-5p 1 1 0
chr19:35019204|35019441 hsa-miR-3151-5p 1 1 0
chr19:35019204|35019441 hsa-miR-3180-3p 1 0 0
chr19:35019204|35019441 hsa-miR-6748-5p 1 1 0
chr19:35019204|35019441 hsa-miR-6793-5p 1 0 0
chr19:35019204|35019441 hsa-miR-942-5p 0 1 0
chr19:35019204|35019441 hsa-miR-6810-5p 0 1 0
chr19:35019204|35019441 hsa-miR-6786-5p 1 1 0
chr19:35019204|35019441 hsa-miR-6763-3p 1 0 0
chr19:35019204|35019441 hsa-miR-1229-5p 1 0 0
chr19:35019204|35019441 hsa-miR-4640-5p 1 1 0
chr19:35019204|35019441 hsa-miR-5001-3p 1 0 0
chr19:35019204|35019441 hsa-miR-885-3p 1 0 0
chr19:35019204|35019441 hsa-miR-1228-5p 1 0 0
chr19:35019204|35019441 hsa-miR-3120-3p 0 1 0
chr19:35019204|35019441 hsa-miR-4732-3p 0 1 0
chr19:35019204|35019441 hsa-miR-4750-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6741-3p 1 1 0
chr19:35019204|35019441 hsa-miR-6513-3p 0 1 0
chr19:35019204|35019441 hsa-miR-1296-3p 0 1 0
chr19:35019204|35019441 hsa-miR-6729-3p 0 1 0
chr19:35019204|35019441 hsa-miR-3617-3p 0 1 0
chr19:35019204|35019441 hsa-miR-10400-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6769b-5p 1 1 0
chr19:35019204|35019441 hsa-miR-6812-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6816-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6775-5p 0 1 0
chr19:35019204|35019441 hsa-miR-3180 1 0 0
chr19:35019204|35019441 hsa-miR-6737-5p 1 1 0
chr19:35019204|35019441 hsa-miR-6743-5p 1 1 0
chr19:35019204|35019441 hsa-miR-6756-5p 1 1 0
chr19:35019204|35019441 hsa-miR-6769a-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6819-5p 0 1 0
chr19:35019204|35019441 hsa-miR-6779-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6780a-5p 1 0 0
chr19:35019204|35019441 hsa-miR-4632-5p 1 1 0
chr19:35019204|35019441 hsa-miR-4701-3p 1 1 0
chr19:35019204|35019441 hsa-miR-4725-3p 1 0 0
chr19:35019204|35019441 hsa-miR-4726-5p 0 1 0
chr19:35019204|35019441 hsa-miR-4745-5p 1 1 0
chr19:35019204|35019441 hsa-miR-6848-5p 1 0 0
chr19:35019204|35019441 hsa-miR-939-5p 1 0 0
chr19:35019204|35019441 hsa-miR-1238-5p 0 1 0
chr19:35019204|35019441 hsa-miR-4758-5p 1 0 0
chr19:35019204|35019441 hsa-miR-3940-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6799-3p 1 0 0
chr19:35019204|35019441 hsa-miR-6773-5p 0 1 0
chr19:35019204|35019441 hsa-miR-6766-5p 1 1 0
chr19:35019204|35019441 hsa-miR-6724-5p 0 1 0
chr19:35019204|35019441 hsa-miR-6791-5p 1 0 0
chr19:35019204|35019441 hsa-miR-6775-3p 1 1 0
chr19:35019204|35019441 hsa-miR-6505-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:35019204|35019441
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence MGAAPEQRLQGQSRRSQGHPTHPAAPPTRLPHLAHLCLHHGGALGAQWVADGDGVRQHPALVALAVPTPG
Nucleotide Sequence CTGGGGGCCGCGCCGGAACAGCGTCTGCAGGGACAGAGCCGGAGAAGTCAGGGCCACCCCACTCACCCAGCTGCCCCACCCACTCGGCTGCCCCACCTGGCCCACCTGTGTCTCCACCACGGAGGCGCTCTTGGGGCCCAGTGGGTTGCTGATGGGGATGGTGTACGTCAGCACCCGGCGCTGGTGGCACTTGCTGTCCCCACTCCAGGG
CircID chr19:35019204|35019441
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MPHPLGCPTWPTCVSTTEALLGPSGLLMGMVYVSTRRWWHLLSPLQG
Nucleotide Sequence CTGCCCCACCCACTCGGCTGCCCCACCTGGCCCACCTGTGTCTCCACCACGGAGGCGCTCTTGGGGCCCAGTGGGTTGCTGATGGGGATGGTGTACGTCAGCACCCGGCGCTGGTGGCACTTGCTGTCCCCACTCCAGGGG
CircID chr19:35019204|35019441
ORF Type ORF3
Protein Length 78
Nucleotide Length 234
Protein Sequence MEWGQQVPPAPGADVHHPHQQPTGPQERLRGGDTGGPGGAAEWVGQLGEWGGPDFSGSVPADAVPARPPGRRVCGGLR
Nucleotide Sequence CTGGAGTGGGGACAGCAAGTGCCACCAGCGCCGGGTGCTGACGTACACCATCCCCATCAGCAACCCACTGGGCCCCAAGAGCGCCTCCGTGGTGGAGACACAGGTGGGCCAGGTGGGGCAGCCGAGTGGGTGGGGCAGCTGGGTGAGTGGGGTGGCCCTGACTTCTCCGGCTCTGTCCCTGCAGACGCTGTTCCGGCGCGGCCCCCAGGCCGGCGGGTGTGTGGTGGACTCCGA
CircID chr19:35019204|35019441
ORF Type ORF4
Protein Length 66
Nucleotide Length 198
Protein Sequence MTYTIPISNPLGPKSASVVETQVGQVGQPSGWGSWVSGVALTSPALSLQTLFRRGPQAGGCVVDSE
Nucleotide Sequence CTGACGTACACCATCCCCATCAGCAACCCACTGGGCCCCAAGAGCGCCTCCGTGGTGGAGACACAGGTGGGCCAGGTGGGGCAGCCGAGTGGGTGGGGCAGCTGGGTGAGTGGGGTGGCCCTGACTTCTCCGGCTCTGTCCCTGCAGACGCTGTTCCGGCGCGGCCCCCAGGCCGGCGGGTGTGTGGTGGACTCCGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab