CircRNA Information

General Information
circRNA Basic Information
CircID chr19:35065901|35066281
Strand -
CircType exon
Host Gene ENSG00000105707.12;
Algorism CIRI2;
Sequence AGCATCTCTCGGACGCCACGTTGGCGGCTGTGTGGCATTGTGAGTTGGGGCACTGGCTGTGCCCTGGCCCAGAAGCCAGGCGTCTACACCAAAGTCAGTGACTTCCGGGAGTGGATCTTCCAGGCCATAAAGGTGAAAGTTGGGTCCAGATGGGAGCCAGGGTGGGGACGTTTGGGTGTCTAATGGGGGAAGGGAGGCAGAGATTTGTTTTAGGAAACCTACGCTCAGGCCTAGAAGAGGGCCCCCCTTGGGAACAGATGGACTTTGAAGGGTTCCTGGGGAAGGGAAGCCAGTGGTGGGACGTGGAAGCCTCTCAGACCTCGGGAGCCCCCAGCTGTCTTTCCCCAGACTCACTCCGAAGCCAGCGGCATGGTGACCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:35065901|35066281 hsa-miR-204-5p 0 0 1
chr19:35065901|35066281 hsa-miR-204-3p 0 0 1
chr19:35065901|35066281 hsa-miR-211-5p 0 0 1
chr19:35065901|35066281 hsa-miR-211-3p 0 0 1
chr19:35065901|35066281 hsa-miR-224-5p 0 0 1
chr19:35065901|35066281 hsa-miR-224-3p 0 0 1
chr19:35065901|35066281 hsa-miR-149-5p 0 0 1
chr19:35065901|35066281 hsa-miR-149-3p 0 0 1
chr19:35065901|35066281 hsa-miR-384 0 0 1
chr19:35065901|35066281 hsa-miR-422a 0 0 1
chr19:35065901|35066281 hsa-miR-520g-5p 0 0 1
chr19:35065901|35066281 hsa-miR-520g-3p 0 0 1
chr19:35065901|35066281 hsa-miR-520h 0 0 1
chr19:35065901|35066281 hsa-miR-575 0 0 1
chr19:35065901|35066281 hsa-miR-612 0 0 1
chr19:35065901|35066281 hsa-miR-623 0 0 1
chr19:35065901|35066281 hsa-miR-627-5p 0 0 1
chr19:35065901|35066281 hsa-miR-627-3p 0 0 1
chr19:35065901|35066281 hsa-miR-637 1 1 1
chr19:35065901|35066281 hsa-miR-645 0 0 1
chr19:35065901|35066281 hsa-miR-892b 0 1 1
chr19:35065901|35066281 hsa-miR-873-5p 0 0 1
chr19:35065901|35066281 hsa-miR-873-3p 0 0 1
chr19:35065901|35066281 hsa-miR-216b-5p 0 0 1
chr19:35065901|35066281 hsa-miR-216b-3p 0 0 1
chr19:35065901|35066281 hsa-miR-924 0 0 1
chr19:35065901|35066281 hsa-miR-1825 0 1 1
chr19:35065901|35066281 hsa-miR-361-3p 0 0 1
chr19:35065901|35066281 hsa-miR-1224-3p 0 0 1
chr19:35065901|35066281 hsa-miR-1207-3p 0 0 1
chr19:35065901|35066281 hsa-miR-1260 0 0 1
chr19:35065901|35066281 hsa-miR-1280 0 0 1
chr19:35065901|35066281 hsa-miR-7 0 0 1
chr19:35065901|35066281 hsa-miR-9 0 0 1
chr19:35065901|35066281 hsa-miR-378 0 0 1
chr19:35065901|35066281 hsa-miR-1285 0 0 1
chr19:35065901|35066281 hsa-miR-1254 0 0 1
chr19:35065901|35066281 hsa-miR-768-3p 0 0 1
chr19:35065901|35066281 hsa-miR-614 0 1 0
chr19:35065901|35066281 hsa-miR-1204 1 0 0
chr19:35065901|35066281 hsa-miR-1260a 0 1 0
chr19:35065901|35066281 hsa-miR-1913 1 0 0
chr19:35065901|35066281 hsa-miR-2110 0 1 0
chr19:35065901|35066281 hsa-miR-3153 0 1 0
chr19:35065901|35066281 hsa-miR-1260b 0 1 0
chr19:35065901|35066281 hsa-miR-3174 0 1 0
chr19:35065901|35066281 hsa-miR-3176 1 0 0
chr19:35065901|35066281 hsa-miR-3183 1 0 0
chr19:35065901|35066281 hsa-miR-4420 0 1 0
chr19:35065901|35066281 hsa-miR-4449 1 0 0
chr19:35065901|35066281 hsa-miR-8089 0 1 0
chr19:35065901|35066281 hsa-miR-4731-5p 0 1 0
chr19:35065901|35066281 hsa-miR-6747-3p 1 1 0
chr19:35065901|35066281 hsa-miR-4726-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6836-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6822-3p 1 0 0
chr19:35065901|35066281 hsa-miR-3692-5p 1 0 0
chr19:35065901|35066281 hsa-miR-1236-5p 1 0 0
chr19:35065901|35066281 hsa-miR-1301-3p 1 0 0
chr19:35065901|35066281 hsa-miR-23a-5p 0 1 0
chr19:35065901|35066281 hsa-miR-6728-3p 1 0 0
chr19:35065901|35066281 hsa-miR-4713-5p 1 0 0
chr19:35065901|35066281 hsa-miR-6815-3p 0 1 0
chr19:35065901|35066281 hsa-miR-6884-3p 0 1 0
chr19:35065901|35066281 hsa-miR-939-3p 1 0 0
chr19:35065901|35066281 hsa-miR-1247-5p 1 0 0
chr19:35065901|35066281 hsa-miR-4783-3p 1 0 0
chr19:35065901|35066281 hsa-miR-4640-5p 1 1 0
chr19:35065901|35066281 hsa-miR-6753-5p 0 1 0
chr19:35065901|35066281 hsa-miR-5001-3p 1 1 0
chr19:35065901|35066281 hsa-miR-7111-3p 1 0 0
chr19:35065901|35066281 hsa-miR-4667-3p 1 0 0
chr19:35065901|35066281 hsa-miR-2115-5p 0 1 0
chr19:35065901|35066281 hsa-miR-1236-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6743-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6752-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6872-3p 0 1 0
chr19:35065901|35066281 hsa-miR-6746-3p 0 1 0
chr19:35065901|35066281 hsa-miR-5088-3p 1 1 0
chr19:35065901|35066281 hsa-miR-4649-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6761-5p 0 1 0
chr19:35065901|35066281 hsa-miR-3184-3p 1 1 0
chr19:35065901|35066281 hsa-miR-3620-3p 0 1 0
chr19:35065901|35066281 hsa-miR-4433a-5p 0 1 0
chr19:35065901|35066281 hsa-miR-1229-3p 0 1 0
chr19:35065901|35066281 hsa-miR-6734-3p 1 1 0
chr19:35065901|35066281 hsa-miR-6812-3p 1 0 0
chr19:35065901|35066281 hsa-miR-1249-3p 1 0 0
chr19:35065901|35066281 hsa-miR-371b-3p 0 1 0
chr19:35065901|35066281 hsa-miR-5699-5p 0 1 0
chr19:35065901|35066281 hsa-miR-329-5p 1 0 0
chr19:35065901|35066281 hsa-miR-3162-3p 1 0 0
chr19:35065901|35066281 hsa-miR-4740-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6756-5p 1 0 0
chr19:35065901|35066281 hsa-miR-4685-3p 1 1 0
chr19:35065901|35066281 hsa-miR-4685-5p 0 1 0
chr19:35065901|35066281 hsa-miR-4745-5p 1 0 0
chr19:35065901|35066281 hsa-miR-6885-5p 0 1 0
chr19:35065901|35066281 hsa-miR-6877-3p 1 0 0
chr19:35065901|35066281 hsa-miR-4700-5p 0 1 0
chr19:35065901|35066281 hsa-miR-10398-3p 1 0 0
chr19:35065901|35066281 hsa-miR-4667-5p 0 1 0
chr19:35065901|35066281 hsa-miR-10398-5p 1 1 0
chr19:35065901|35066281 hsa-miR-6762-5p 0 1 0
chr19:35065901|35066281 hsa-miR-6756-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6829-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6837-5p 0 1 0
chr19:35065901|35066281 hsa-miR-6819-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6764-5p 0 1 0
chr19:35065901|35066281 hsa-miR-5006-3p 1 1 0
chr19:35065901|35066281 hsa-miR-4769-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6737-3p 1 0 0
chr19:35065901|35066281 hsa-miR-412-3p 1 0 0
chr19:35065901|35066281 hsa-miR-6733-5p 0 1 0
chr19:35065901|35066281 hsa-miR-3064-3p 0 1 0
chr19:35065901|35066281 hsa-miR-7-1-3p 0 1 0
chr19:35065901|35066281 hsa-miR-6507-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:35065901|35066281
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKVKVGSRWEPGWGRLGV
Nucleotide Sequence CTGTGTGGCATTGTGAGTTGGGGCACTGGCTGTGCCCTGGCCCAGAAGCCAGGCGTCTACACCAAAGTCAGTGACTTCCGGGAGTGGATCTTCCAGGCCATAAAGGTGAAAGTTGGGTCCAGATGGGAGCCAGGGTGGGGACGTTTGGGTGTCTAA
CircID chr19:35065901|35066281
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MKGSWGREASGGTWKPLRPREPPAVFPQTHSEASGMVTQ
Nucleotide Sequence TTGAAGGGTTCCTGGGGAAGGGAAGCCAGTGGTGGGACGTGGAAGCCTCTCAGACCTCGGGAGCCCCCAGCTGTCTTTCCCCAGACTCACTCCGAAGCCAGCGGCATGGTGACCCAG
CircID chr19:35065901|35066281
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MAVPWPRSQASTPKSVTSGSGSSRP
Nucleotide Sequence CTGGCTGTGCCCTGGCCCAGAAGCCAGGCGTCTACACCAAAGTCAGTGACTTCCGGGAGTGGATCTTCCAGGCCATAA
CircID chr19:35065901|35066281
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MGPDGSQGGDVWVSNGGREAEICFRKPTLRPRRGPPLGTDGL
Nucleotide Sequence TTGGGTCCAGATGGGAGCCAGGGTGGGGACGTTTGGGTGTCTAATGGGGGAAGGGAGGCAGAGATTTGTTTTAGGAAACCTACGCTCAGGCCTAGAAGAGGGCCCCCCTTGGGAACAGATGGACTTTGA
CircID chr19:35065901|35066281
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MAAVWHCELGHWLCPGPEARRLHQSQ
Nucleotide Sequence TTGGCGGCTGTGTGGCATTGTGAGTTGGGGCACTGGCTGTGCCCTGGCCCAGAAGCCAGGCGTCTACACCAAAGTCAGTGA
CircID chr19:35065901|35066281
ORF Type ORF6
Protein Length 77
Nucleotide Length 231
Protein Sequence MGARVGTFGCLMGEGRQRFVLGNLRSGLEEGPPWEQMDFEGFLGKGSQWWDVEASQTSGAPSCLSPDSLRSQRHGDP
Nucleotide Sequence ATGGGAGCCAGGGTGGGGACGTTTGGGTGTCTAATGGGGGAAGGGAGGCAGAGATTTGTTTTAGGAAACCTACGCTCAGGCCTAGAAGAGGGCCCCCCTTGGGAACAGATGGACTTTGAAGGGTTCCTGGGGAAGGGAAGCCAGTGGTGGGACGTGGAAGCCTCTCAGACCTCGGGAGCCCCCAGCTGTCTTTCCCCAGACTCACTCCGAAGCCAGCGGCATGGTGACCCA
CircID chr19:35065901|35066281
ORF Type ORF7
Protein Length 127
Nucleotide Length 381
Protein Sequence LGHHAAGFGVSLGKDSWGLPRSERLPRPTTGFPSPGTLQSPSVPKGGPLLGLSVGFLKQISASLPPLDTQTSPPWLPSGPNFHLYGLEDPLPEVTDFGVDAWLLGQGTASAPTHNATQPPTWRPRDA
Nucleotide Sequence CTGGGTCACCATGCCGCTGGCTTCGGAGTGAGTCTGGGGAAAGACAGCTGGGGGCTCCCGAGGTCTGAGAGGCTTCCACGTCCCACCACTGGCTTCCCTTCCCCAGGAACCCTTCAAAGTCCATCTGTTCCCAAGGGGGGCCCTCTTCTAGGCCTGAGCGTAGGTTTCCTAAAACAAATCTCTGCCTCCCTTCCCCCATTAGACACCCAAACGTCCCCACCCTGGCTCCCATCTGGACCCAACTTTCACCTTTATGGCCTGGAAGATCCACTCCCGGAAGTCACTGACTTTGGTGTAGACGCCTGGCTTCTGGGCCAGGGCACAGCCAGTGCCCCAACTCACAATGCCACACAGCCGCCAACGTGGCGTCCGAGAGATGCT
CircID chr19:35065901|35066281
ORF Type ORF8
Protein Length 28
Nucleotide Length 87
Protein Sequence MRGFHVPPLASLPQEPFKVHLFPRGALF
Nucleotide Sequence CTGAGAGGCTTCCACGTCCCACCACTGGCTTCCCTTCCCCAGGAACCCTTCAAAGTCCATCTGTTCCCAAGGGGGGCCCTCTTCTAG
CircID chr19:35065901|35066281
ORF Type ORF9
Protein Length 26
Nucleotide Length 78
Protein Sequence MASGPGHSQCPNSQCHTAANVASERC
Nucleotide Sequence CTGGCTTCTGGGCCAGGGCACAGCCAGTGCCCCAACTCACAATGCCACACAGCCGCCAACGTGGCGTCCGAGAGATGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab