CircRNA Information

General Information
circRNA Basic Information
CircID chr19:35123275|35123594
Strand -
CircType exon
Host Gene ENSG00000089356.15;
Algorism CIRI2;
Sequence CATCCAGGGGAGACTCCACCTCTCATCACCCCAGGCTCAGCCCAAAGCTGATGAGGACAGACCAGCTGAAATTGGGTGGAGGACCGTTCTCTGTCCCCAGGTCCTGTCTCTGCACAGAAACTTGAACTCCAGGATGGAATTCTTCCTCCTCTGCTGGGACTCCTTTGCATGGCAGGGCCTCATCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:35123275|35123594 hsa-miR-19a-5p 0 0 1
chr19:35123275|35123594 hsa-miR-19a-3p 0 0 1
chr19:35123275|35123594 hsa-miR-26b-5p 0 0 1
chr19:35123275|35123594 hsa-miR-26b-3p 0 0 1
chr19:35123275|35123594 hsa-miR-143-5p 0 0 1
chr19:35123275|35123594 hsa-miR-143-3p 0 0 1
chr19:35123275|35123594 hsa-miR-492 1 0 1
chr19:35123275|35123594 hsa-miR-527 0 0 1
chr19:35123275|35123594 hsa-miR-596 0 0 1
chr19:35123275|35123594 hsa-miR-603 0 0 1
chr19:35123275|35123594 hsa-miR-608 1 0 1
chr19:35123275|35123594 hsa-miR-619-5p 0 0 1
chr19:35123275|35123594 hsa-miR-619-3p 0 0 1
chr19:35123275|35123594 hsa-miR-631 0 0 1
chr19:35123275|35123594 hsa-miR-648 0 0 1
chr19:35123275|35123594 hsa-miR-661 0 0 1
chr19:35123275|35123594 hsa-miR-758-5p 0 0 1
chr19:35123275|35123594 hsa-miR-758-3p 0 0 1
chr19:35123275|35123594 hsa-miR-922 0 0 1
chr19:35123275|35123594 hsa-miR-1291 0 0 1
chr19:35123275|35123594 hsa-miR-1294 0 0 1
chr19:35123275|35123594 hsa-miR-1297 0 0 1
chr19:35123275|35123594 hsa-miR-1825 0 0 1
chr19:35123275|35123594 hsa-miR-1225-3p 1 0 1
chr19:35123275|35123594 hsa-miR-145-5p 0 0 1
chr19:35123275|35123594 hsa-miR-615-5p 0 0 1
chr19:35123275|35123594 hsa-miR-199a-5p 0 0 1
chr19:35123275|35123594 hsa-miR-1289 0 0 1
chr19:35123275|35123594 hsa-miR-1207-3p 0 0 1
chr19:35123275|35123594 hsa-miR-331-3p 0 0 1
chr19:35123275|35123594 hsa-miR-199b-5p 0 0 1
chr19:35123275|35123594 hsa-miR-324-3p 0 0 1
chr19:35123275|35123594 hsa-miR-342-5p 0 0 1
chr19:35123275|35123594 hsa-miR-125a-5p 0 0 1
chr19:35123275|35123594 hsa-miR-518a-5p 0 0 1
chr19:35123275|35123594 hsa-miR-362-3p 0 0 1
chr19:35123275|35123594 hsa-miR-1233 0 0 1
chr19:35123275|35123594 hsa-miR-125b 0 0 1
chr19:35123275|35123594 hsa-miR-26a 0 0 1
chr19:35123275|35123594 hsa-miR-19b 0 0 1
chr19:35123275|35123594 hsa-miR-329 0 0 1
chr19:35123275|35123594 hsa-miR-422a 1 0 0
chr19:35123275|35123594 hsa-miR-663a 1 0 0
chr19:35123275|35123594 hsa-miR-762 1 0 0
chr19:35123275|35123594 hsa-miR-298 1 0 0
chr19:35123275|35123594 hsa-miR-760 1 0 0
chr19:35123275|35123594 hsa-miR-2861 1 0 0
chr19:35123275|35123594 hsa-miR-3122 1 0 0
chr19:35123275|35123594 hsa-miR-378b 1 0 0
chr19:35123275|35123594 hsa-miR-466 1 0 0
chr19:35123275|35123594 hsa-miR-378c 1 0 0
chr19:35123275|35123594 hsa-miR-4294 1 0 0
chr19:35123275|35123594 hsa-miR-4313 1 0 0
chr19:35123275|35123594 hsa-miR-4322 1 0 0
chr19:35123275|35123594 hsa-miR-4270 1 0 0
chr19:35123275|35123594 hsa-miR-3918 1 0 0
chr19:35123275|35123594 hsa-miR-3921 1 0 0
chr19:35123275|35123594 hsa-miR-3943 1 0 0
chr19:35123275|35123594 hsa-miR-1268b 1 0 0
chr19:35123275|35123594 hsa-miR-4498 1 0 0
chr19:35123275|35123594 hsa-miR-4507 1 0 0
chr19:35123275|35123594 hsa-miR-1587 1 0 0
chr19:35123275|35123594 hsa-miR-4656 1 0 0
chr19:35123275|35123594 hsa-miR-4689 1 0 0
chr19:35123275|35123594 hsa-miR-4706 1 0 0
chr19:35123275|35123594 hsa-miR-4741 1 0 0
chr19:35123275|35123594 hsa-miR-4780 1 0 0
chr19:35123275|35123594 hsa-miR-5787 1 0 0
chr19:35123275|35123594 hsa-miR-8089 1 0 0
chr19:35123275|35123594 hsa-miR-8485 1 0 0
chr19:35123275|35123594 hsa-miR-4700-3p 1 0 0
chr19:35123275|35123594 hsa-miR-7106-5p 1 0 0
chr19:35123275|35123594 hsa-miR-1233-3p 1 0 0
chr19:35123275|35123594 hsa-miR-6510-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6089 1 0 0
chr19:35123275|35123594 hsa-miR-296-5p 1 0 0
chr19:35123275|35123594 hsa-miR-874-5p 1 0 0
chr19:35123275|35123594 hsa-miR-197-5p 1 0 0
chr19:35123275|35123594 hsa-miR-3189-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6782-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6810-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6882-3p 1 0 0
chr19:35123275|35123594 hsa-miR-615-3p 1 0 0
chr19:35123275|35123594 hsa-miR-939-3p 1 0 0
chr19:35123275|35123594 hsa-miR-3944-3p 1 0 0
chr19:35123275|35123594 hsa-miR-6749-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6769a-3p 1 0 0
chr19:35123275|35123594 hsa-miR-4758-3p 1 0 0
chr19:35123275|35123594 hsa-miR-6859-3p 1 0 0
chr19:35123275|35123594 hsa-miR-6812-5p 1 0 0
chr19:35123275|35123594 hsa-miR-5001-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6726-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6737-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6743-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6813-5p 1 0 0
chr19:35123275|35123594 hsa-miR-7107-5p 1 0 0
chr19:35123275|35123594 hsa-miR-10401-5p 1 0 0
chr19:35123275|35123594 hsa-miR-3620-5p 1 0 0
chr19:35123275|35123594 hsa-miR-675-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6858-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6889-5p 1 0 0
chr19:35123275|35123594 hsa-miR-10396a-3p 1 0 0
chr19:35123275|35123594 hsa-miR-10396b-3p 1 0 0
chr19:35123275|35123594 hsa-miR-3198 1 0 0
chr19:35123275|35123594 hsa-miR-5008-3p 1 0 0
chr19:35123275|35123594 hsa-miR-378a-3p 1 0 0
chr19:35123275|35123594 hsa-miR-6724-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6791-5p 1 0 0
chr19:35123275|35123594 hsa-miR-6810-3p 1 0 0
chr19:35123275|35123594 hsa-miR-6837-5p 1 0 0
chr19:35123275|35123594 hsa-miR-3059-5p 1 0 0
chr19:35123275|35123594 hsa-miR-3622b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:35123275|35123594
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MSPGPVSAQKLELQDGILPPLLGLLCMAGPHL
Nucleotide Sequence CTGTCCCCAGGTCCTGTCTCTGCACAGAAACTTGAACTCCAGGATGGAATTCTTCCTCCTCTGCTGGGACTCCTTTGCATGGCAGGGCCTCATCTC
CircID chr19:35123275|35123594
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MSLHRNLNSRMEFFLLCWDSFAWQGLIS
Nucleotide Sequence CTGTCTCTGCACAGAAACTTGAACTCCAGGATGGAATTCTTCCTCCTCTGCTGGGACTCCTTTGCATGGCAGGGCCTCATCTCA
CircID chr19:35123275|35123594
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MMRTDQLKLGGGPFSVPRSCLCTET
Nucleotide Sequence CTGATGAGGACAGACCAGCTGAAATTGGGTGGAGGACCGTTCTCTGTCCCCAGGTCCTGTCTCTGCACAGAAACTTGA
CircID chr19:35123275|35123594
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MQRSPSRGGRIPSWSSSFCAETGPGDRERSSTQFQLVCPHQLWAEPGVMRGGVSPG
Nucleotide Sequence ATGCAAAGGAGTCCCAGCAGAGGAGGAAGAATTCCATCCTGGAGTTCAAGTTTCTGTGCAGAGACAGGACCTGGGGACAGAGAACGGTCCTCCACCCAATTTCAGCTGGTCTGTCCTCATCAGCTTTGGGCTGAGCCTGGGGTGATGAGAGGTGGAGTCTCCCCTGGA
CircID chr19:35123275|35123594
ORF Type ORF5
Protein Length 49
Nucleotide Length 150
Protein Sequence MPCKGVPAEEEEFHPGVQVSVQRQDLGTENGPPPNFSWSVLISFGLSLG
Nucleotide Sequence CTGCCATGCAAAGGAGTCCCAGCAGAGGAGGAAGAATTCCATCCTGGAGTTCAAGTTTCTGTGCAGAGACAGGACCTGGGGACAGAGAACGGTCCTCCACCCAATTTCAGCTGGTCTGTCCTCATCAGCTTTGGGCTGAGCCTGGGGTGA
CircID chr19:35123275|35123594
ORF Type ORF6
Protein Length 48
Nucleotide Length 147
Protein Sequence MRPCHAKESQQRRKNSILEFKFLCRDRTWGQRTVLHPISAGLSSSALG
Nucleotide Sequence ATGAGGCCCTGCCATGCAAAGGAGTCCCAGCAGAGGAGGAAGAATTCCATCCTGGAGTTCAAGTTTCTGTGCAGAGACAGGACCTGGGGACAGAGAACGGTCCTCCACCCAATTTCAGCTGGTCTGTCCTCATCAGCTTTGGGCTGA
CircID chr19:35123275|35123594
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MGQHGAQGNTEVVCVCVCMCVFAHWKEKNSIHPHKRTPSLPAGSAQS
Nucleotide Sequence ATGGGGCAGCATGGGGCTCAGGGGAACACGGAAGTGGTGTGTGTGTGTGTGTGTATGTGTGTGTTTGCACACTGGAAAGAAAAGAACTCAATCCACCCTCACAAACGGACCCCATCACTTCCCGCAGGCTCAGCCCAAAGCTGA
CircID chr19:35123275|35123594
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MSPGPVSAQKLELQDGILPPLLGLLCMAGPHL
Nucleotide Sequence CTGTCCCCAGGTCCTGTCTCTGCACAGAAACTTGAACTCCAGGATGGAATTCTTCCTCCTCTGCTGGGACTCCTTTGCATGGCAGGGCCTCATCTC
CircID chr19:35123275|35123594
ORF Type ORF3
Protein Length 90
Nucleotide Length 270
Protein Sequence MGLRGTRKWCVCVCVCVCLHTGKKRTQSTLTNGPHHFPQAQPKADEDRPAEIGWRTVLCPQVLSLHRNLNSRMEFFLLCWDSFAWQGLIS
Nucleotide Sequence ATGGGGCTCAGGGGAACACGGAAGTGGTGTGTGTGTGTGTGTGTATGTGTGTGTTTGCACACTGGAAAGAAAAGAACTCAATCCACCCTCACAAACGGACCCCATCACTTCCCGCAGGCTCAGCCCAAAGCTGATGAGGACAGACCAGCTGAAATTGGGTGGAGGACCGTTCTCTGTCCCCAGGTCCTGTCTCTGCACAGAAACTTGAACTCCAGGATGGAATTCTTCCTCCTCTGCTGGGACTCCTTTGCATGGCAGGGCCTCATCTCA
CircID chr19:35123275|35123594
ORF Type ORF4
Protein Length 48
Nucleotide Length 147
Protein Sequence MERKELNPPSQTDPITSRRLSPKLMRTDQLKLGGGPFSVPRSCLCTET
Nucleotide Sequence CTGGAAAGAAAAGAACTCAATCCACCCTCACAAACGGACCCCATCACTTCCCGCAGGCTCAGCCCAAAGCTGATGAGGACAGACCAGCTGAAATTGGGTGGAGGACCGTTCTCTGTCCCCAGGTCCTGTCTCTGCACAGAAACTTGA
CircID chr19:35123275|35123594
ORF Type ORF5
Protein Length 54
Nucleotide Length 165
Protein Sequence MQRSPSRGGRIPSWSSSFCAETGPGDRERSSTQFQLVCPHQLWAEPAGSDGVRL
Nucleotide Sequence ATGCAAAGGAGTCCCAGCAGAGGAGGAAGAATTCCATCCTGGAGTTCAAGTTTCTGTGCAGAGACAGGACCTGGGGACAGAGAACGGTCCTCCACCCAATTTCAGCTGGTCTGTCCTCATCAGCTTTGGGCTGAGCCTGCGGGAAGTGATGGGGTCCGTTTGTGA
CircID chr19:35123275|35123594
ORF Type ORF6
Protein Length 93
Nucleotide Length 282
Protein Sequence MPCKGVPAEEEEFHPGVQVSVQRQDLGTENGPPPNFSWSVLISFGLSLREVMGSVCEGGLSSFLSSVQTHTYTHTHTPLPCSPEPHAAPSYLG
Nucleotide Sequence CTGCCATGCAAAGGAGTCCCAGCAGAGGAGGAAGAATTCCATCCTGGAGTTCAAGTTTCTGTGCAGAGACAGGACCTGGGGACAGAGAACGGTCCTCCACCCAATTTCAGCTGGTCTGTCCTCATCAGCTTTGGGCTGAGCCTGCGGGAAGTGATGGGGTCCGTTTGTGAGGGTGGATTGAGTTCTTTTCTTTCCAGTGTGCAAACACACACATACACACACACACACACACCACTTCCGTGTTCCCCTGAGCCCCATGCTGCCCCATCTTACCTGGGGTGA
CircID chr19:35123275|35123594
ORF Type ORF7
Protein Length 48
Nucleotide Length 147
Protein Sequence MRPCHAKESQQRRKNSILEFKFLCRDRTWGQRTVLHPISAGLSSSALG
Nucleotide Sequence ATGAGGCCCTGCCATGCAAAGGAGTCCCAGCAGAGGAGGAAGAATTCCATCCTGGAGTTCAAGTTTCTGTGCAGAGACAGGACCTGGGGACAGAGAACGGTCCTCCACCCAATTTCAGCTGGTCTGTCCTCATCAGCTTTGGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab