CircRNA Information

General Information
circRNA Basic Information
CircID chr19:35250356|35250608
Strand -
CircType exon
Host Gene ENSG00000105699.15;
Algorism CIRI2;
Sequence CACGTGGTGATCCTCTTCCAGCCTGTGACCCTGCCCTGTACCTACCAGATGACCTCGACCCCCACGCAACCCATCGTCATCTGGAAGTACAAGTCTTTCTGCCGGGACCGCATCGCCGATGCCTTCTCCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCAGCCGGGAACCCAGGCTACAACCCCTACGTTGAGTGCCAGGACAGCGTGCGCACCGTCAGGGTCGTGGCCACCAAGCAGGGCAACG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:35250356|35250608 hsa-miR-197-5p 0 0 1
chr19:35250356|35250608 hsa-miR-197-3p 0 0 1
chr19:35250356|35250608 hsa-miR-504-5p 0 0 1
chr19:35250356|35250608 hsa-miR-504-3p 0 0 1
chr19:35250356|35250608 hsa-miR-558 0 0 1
chr19:35250356|35250608 hsa-miR-588 0 0 1
chr19:35250356|35250608 hsa-miR-596 0 0 1
chr19:35250356|35250608 hsa-miR-612 0 0 1
chr19:35250356|35250608 hsa-miR-661 1 1 1
chr19:35250356|35250608 hsa-miR-874-5p 0 0 1
chr19:35250356|35250608 hsa-miR-874-3p 0 0 1
chr19:35250356|35250608 hsa-miR-933 0 1 1
chr19:35250356|35250608 hsa-miR-1202 1 1 1
chr19:35250356|35250608 hsa-miR-1256 0 0 1
chr19:35250356|35250608 hsa-miR-146b-3p 0 0 1
chr19:35250356|35250608 hsa-miR-525-5p 0 0 1
chr19:35250356|35250608 hsa-miR-1207-3p 0 0 1
chr19:35250356|35250608 hsa-miR-513a-5p 0 0 1
chr19:35250356|35250608 hsa-miR-1207-5p 1 1 1
chr19:35250356|35250608 hsa-miR-520a-5p 0 0 1
chr19:35250356|35250608 hsa-miR-220b 0 0 1
chr19:35250356|35250608 hsa-miR-220c 0 0 1
chr19:35250356|35250608 hsa-miR-7 0 0 1
chr19:35250356|35250608 hsa-miR-1285 0 0 1
chr19:35250356|35250608 hsa-miR-453 0 0 1
chr19:35250356|35250608 hsa-miR-663a 1 0 0
chr19:35250356|35250608 hsa-miR-762 1 0 0
chr19:35250356|35250608 hsa-miR-1182 1 0 0
chr19:35250356|35250608 hsa-miR-1268a 1 0 0
chr19:35250356|35250608 hsa-miR-3141 1 0 0
chr19:35250356|35250608 hsa-miR-3147 1 1 0
chr19:35250356|35250608 hsa-miR-3175 0 1 0
chr19:35250356|35250608 hsa-miR-3185 1 0 0
chr19:35250356|35250608 hsa-miR-4281 0 1 0
chr19:35250356|35250608 hsa-miR-3621 1 0 0
chr19:35250356|35250608 hsa-miR-1268b 1 0 0
chr19:35250356|35250608 hsa-miR-4438 0 1 0
chr19:35250356|35250608 hsa-miR-4466 1 0 0
chr19:35250356|35250608 hsa-miR-4486 1 0 0
chr19:35250356|35250608 hsa-miR-4507 0 1 0
chr19:35250356|35250608 hsa-miR-4516 0 1 0
chr19:35250356|35250608 hsa-miR-4526 1 0 0
chr19:35250356|35250608 hsa-miR-4706 1 1 0
chr19:35250356|35250608 hsa-miR-4734 1 0 0
chr19:35250356|35250608 hsa-miR-4739 1 0 0
chr19:35250356|35250608 hsa-miR-4741 1 0 0
chr19:35250356|35250608 hsa-miR-4767 1 0 0
chr19:35250356|35250608 hsa-miR-5787 1 0 0
chr19:35250356|35250608 hsa-miR-6085 1 0 0
chr19:35250356|35250608 hsa-miR-6132 1 0 0
chr19:35250356|35250608 hsa-miR-6860 1 1 0
chr19:35250356|35250608 hsa-miR-8089 1 1 0
chr19:35250356|35250608 hsa-miR-12122 1 1 0
chr19:35250356|35250608 hsa-miR-150-3p 1 0 0
chr19:35250356|35250608 hsa-miR-6746-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6727-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6721-5p 0 1 0
chr19:35250356|35250608 hsa-miR-23b-5p 0 1 0
chr19:35250356|35250608 hsa-miR-7845-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6793-5p 1 1 0
chr19:35250356|35250608 hsa-miR-23a-5p 0 1 0
chr19:35250356|35250608 hsa-miR-6770-5p 0 1 0
chr19:35250356|35250608 hsa-miR-6821-5p 1 1 0
chr19:35250356|35250608 hsa-miR-5006-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6786-5p 1 0 0
chr19:35250356|35250608 hsa-miR-1226-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6853-5p 0 1 0
chr19:35250356|35250608 hsa-miR-1229-5p 1 0 0
chr19:35250356|35250608 hsa-miR-1908-5p 1 0 0
chr19:35250356|35250608 hsa-miR-1228-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6823-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6717-5p 0 1 0
chr19:35250356|35250608 hsa-miR-202-3p 1 0 0
chr19:35250356|35250608 hsa-miR-6742-3p 0 1 0
chr19:35250356|35250608 hsa-miR-503-3p 1 0 0
chr19:35250356|35250608 hsa-miR-4746-5p 0 1 0
chr19:35250356|35250608 hsa-miR-3173-5p 0 1 0
chr19:35250356|35250608 hsa-miR-221-5p 0 1 0
chr19:35250356|35250608 hsa-miR-4763-3p 1 1 0
chr19:35250356|35250608 hsa-miR-6769b-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6787-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6775-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6743-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6756-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6803-5p 1 1 0
chr19:35250356|35250608 hsa-miR-6722-3p 1 0 0
chr19:35250356|35250608 hsa-miR-6751-5p 1 1 0
chr19:35250356|35250608 hsa-miR-6808-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6879-5p 1 1 0
chr19:35250356|35250608 hsa-miR-3620-5p 1 0 0
chr19:35250356|35250608 hsa-miR-5189-5p 0 1 0
chr19:35250356|35250608 hsa-miR-5196-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6780b-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6836-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6862-5p 1 0 0
chr19:35250356|35250608 hsa-miR-10396b-5p 1 0 0
chr19:35250356|35250608 hsa-miR-1909-3p 1 0 0
chr19:35250356|35250608 hsa-miR-4649-5p 1 0 0
chr19:35250356|35250608 hsa-miR-4725-3p 1 1 0
chr19:35250356|35250608 hsa-miR-6729-5p 1 0 0
chr19:35250356|35250608 hsa-miR-6735-5p 1 1 0
chr19:35250356|35250608 hsa-miR-6777-5p 1 1 0
chr19:35250356|35250608 hsa-miR-3187-5p 1 1 0
chr19:35250356|35250608 hsa-miR-939-5p 1 0 0
chr19:35250356|35250608 hsa-miR-3940-5p 0 1 0
chr19:35250356|35250608 hsa-miR-6799-3p 0 1 0
chr19:35250356|35250608 hsa-miR-1914-3p 1 0 0
chr19:35250356|35250608 hsa-miR-7151-3p 1 1 0
chr19:35250356|35250608 hsa-miR-4472 0 1 0
chr19:35250356|35250608 hsa-miR-4701-5p 0 1 0
chr19:35250356|35250608 hsa-miR-323b-5p 0 1 0
chr19:35250356|35250608 hsa-miR-494-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:35250356|35250608
ORF Type ORF1
Protein Length 74
Nucleotide Length 222
Protein Sequence MPCTYQMTSTPTQPIVIWKYKSFCRDRIADAFSPASVDNQLNAQLAAGNPGYNPYVECQDSVRTVRVVATKQGN
Nucleotide Sequence CTGCCCTGTACCTACCAGATGACCTCGACCCCCACGCAACCCATCGTCATCTGGAAGTACAAGTCTTTCTGCCGGGACCGCATCGCCGATGCCTTCTCCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCAGCCGGGAACCCAGGCTACAACCCCTACGTTGAGTGCCAGGACAGCGTGCGCACCGTCAGGGTCGTGGCCACCAAGCAGGGCAAC
CircID chr19:35250356|35250608
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MPSPRPASTTSSMPSWQPGTQATTPTLSARTACAPSGSWPPSRAT
Nucleotide Sequence ATGCCTTCTCCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCAGCCGGGAACCCAGGCTACAACCCCTACGTTGAGTGCCAGGACAGCGTGCGCACCGTCAGGGTCGTGGCCACCAAGCAGGGCAACG
CircID chr19:35250356|35250608
ORF Type ORF3
Protein Length 54
Nucleotide Length 165
Protein Sequence MYLPDDLDPHATHRHLEVQVFLPGPHRRCLLPGQRRQPAQCPAGSREPRLQPLR
Nucleotide Sequence CTGTACCTACCAGATGACCTCGACCCCCACGCAACCCATCGTCATCTGGAAGTACAAGTCTTTCTGCCGGGACCGCATCGCCGATGCCTTCTCCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCAGCCGGGAACCCAGGCTACAACCCCTACGTTGA
CircID chr19:35250356|35250608
ORF Type ORF4
Protein Length 82
Nucleotide Length 246
Protein Sequence MLGGHDPDGAHAVLALNVGVVAWVPGCQLGIELVVDAGRGEGIGDAVPAERLVLPDDDGLRGGRGHLVGTGQGHRLEEDHHV
Nucleotide Sequence CTGCTTGGTGGCCACGACCCTGACGGTGCGCACGCTGTCCTGGCACTCAACGTAGGGGTTGTAGCCTGGGTTCCCGGCTGCCAGCTGGGCATTGAGCTGGTTGTCGACGCTGGCCGGGGAGAAGGCATCGGCGATGCGGTCCCGGCAGAAAGACTTGTACTTCCAGATGACGATGGGTTGCGTGGGGGTCGAGGTCATCTGGTAGGTACAGGGCAGGGTCACAGGCTGGAAGAGGATCACCACGTG
CircID chr19:35250356|35250608
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MSWLSTLAGEKASAMRSRQKDLYFQMTMGCVGVEVIW
Nucleotide Sequence TTGAGCTGGTTGTCGACGCTGGCCGGGGAGAAGGCATCGGCGATGCGGTCCCGGCAGAAAGACTTGTACTTCCAGATGACGATGGGTTGCGTGGGGGTCGAGGTCATCTGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab