CircRNA Information

General Information
circRNA Basic Information
CircID chr19:35270759|35271141
Strand +
CircType exon
Host Gene ENSG00000105698.14;
Algorism CIRI2;
Sequence CTTCGTTGTGCTGGGCTCTTCTCCTCTCATCTCGGGGTGTTCTGGTTCCATCAATTTTTCTACAAGAGGAGGAAAAAAAAAGGGGGCATGTATTATCGCAGAGCTGTTTGCCCAAGCATCTGCTAAGTATTAGATTTGAAAATTATCTTTGCAAGGTAAATCCATCTGCAAAAACAAAAGACATGATACTTTATGTGCACTAGAGCAGCAGAAACAGGCAAAGAAAAAAAACATTACACCATGTGCCCACTTCATGCTAACTGCCCAGCTTCTACTCCAGAAACCCCTCTTCCTTCCATTTCAACACCAGGCCCTCCAGGTGTCCCCTGCACATACGGAGAGTAAGGGTGTGTCCGGGGGGCGATCGTCCTCTGTGTTCCTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:35270759|35271141 hsa-miR-200b-5p 0 0 1
chr19:35270759|35271141 hsa-miR-200b-3p 0 0 1
chr19:35270759|35271141 hsa-miR-130a-5p 0 0 1
chr19:35270759|35271141 hsa-miR-130a-3p 0 0 1
chr19:35270759|35271141 hsa-miR-143-5p 0 0 1
chr19:35270759|35271141 hsa-miR-143-3p 0 0 1
chr19:35270759|35271141 hsa-miR-200c-5p 0 0 1
chr19:35270759|35271141 hsa-miR-200c-3p 0 0 1
chr19:35270759|35271141 hsa-miR-301a-5p 0 0 1
chr19:35270759|35271141 hsa-miR-301a-3p 0 0 1
chr19:35270759|35271141 hsa-miR-130b-5p 0 0 1
chr19:35270759|35271141 hsa-miR-130b-3p 0 0 1
chr19:35270759|35271141 hsa-miR-429 0 0 1
chr19:35270759|35271141 hsa-miR-511-5p 0 0 1
chr19:35270759|35271141 hsa-miR-511-3p 0 0 1
chr19:35270759|35271141 hsa-miR-527 0 0 1
chr19:35270759|35271141 hsa-miR-507 0 0 1
chr19:35270759|35271141 hsa-miR-557 0 0 1
chr19:35270759|35271141 hsa-miR-559 0 0 1
chr19:35270759|35271141 hsa-miR-573 0 0 1
chr19:35270759|35271141 hsa-miR-607 0 0 1
chr19:35270759|35271141 hsa-miR-612 0 0 1
chr19:35270759|35271141 hsa-miR-619-5p 0 0 1
chr19:35270759|35271141 hsa-miR-619-3p 0 0 1
chr19:35270759|35271141 hsa-miR-635 0 0 1
chr19:35270759|35271141 hsa-miR-643 0 0 1
chr19:35270759|35271141 hsa-miR-653-5p 0 0 1
chr19:35270759|35271141 hsa-miR-653-3p 0 0 1
chr19:35270759|35271141 hsa-miR-655-5p 0 0 1
chr19:35270759|35271141 hsa-miR-655-3p 0 0 1
chr19:35270759|35271141 hsa-miR-454-5p 0 0 1
chr19:35270759|35271141 hsa-miR-454-3p 0 0 1
chr19:35270759|35271141 hsa-miR-873-5p 0 0 1
chr19:35270759|35271141 hsa-miR-873-3p 0 0 1
chr19:35270759|35271141 hsa-miR-301b-5p 0 0 1
chr19:35270759|35271141 hsa-miR-301b-3p 0 0 1
chr19:35270759|35271141 hsa-miR-1238-5p 0 0 1
chr19:35270759|35271141 hsa-miR-1238-3p 0 0 1
chr19:35270759|35271141 hsa-miR-548j-5p 0 0 1
chr19:35270759|35271141 hsa-miR-548j-3p 0 0 1
chr19:35270759|35271141 hsa-miR-1290 0 0 1
chr19:35270759|35271141 hsa-miR-548k 0 0 1
chr19:35270759|35271141 hsa-miR-1299 0 0 1
chr19:35270759|35271141 hsa-miR-548l 0 0 1
chr19:35270759|35271141 hsa-miR-1305 0 0 1
chr19:35270759|35271141 hsa-miR-1246 0 0 1
chr19:35270759|35271141 hsa-miR-1253 0 1 1
chr19:35270759|35271141 hsa-miR-1252-5p 0 0 1
chr19:35270759|35271141 hsa-miR-1252-3p 0 0 1
chr19:35270759|35271141 hsa-miR-129-5p 0 0 1
chr19:35270759|35271141 hsa-miR-142-5p 0 0 1
chr19:35270759|35271141 hsa-miR-455-5p 0 0 1
chr19:35270759|35271141 hsa-miR-409-3p 0 0 1
chr19:35270759|35271141 hsa-miR-548b-5p 0 0 1
chr19:35270759|35271141 hsa-miR-548d-5p 0 0 1
chr19:35270759|35271141 hsa-miR-876-5p 0 0 1
chr19:35270759|35271141 hsa-miR-518a-5p 0 0 1
chr19:35270759|35271141 hsa-miR-362-3p 0 0 1
chr19:35270759|35271141 hsa-miR-450b-5p 0 0 1
chr19:35270759|35271141 hsa-miR-590-3p 0 0 1
chr19:35270759|35271141 hsa-miR-548c-5p 0 0 1
chr19:35270759|35271141 hsa-miR-548a-5p 0 0 1
chr19:35270759|35271141 hsa-miR-548i 0 0 1
chr19:35270759|35271141 hsa-miR-369-3p 0 0 1
chr19:35270759|35271141 hsa-miR-1285 0 0 1
chr19:35270759|35271141 hsa-miR-516b 0 0 1
chr19:35270759|35271141 hsa-miR-544 0 0 1
chr19:35270759|35271141 hsa-miR-329 0 0 1
chr19:35270759|35271141 hsa-miR-203 0 0 1
chr19:35270759|35271141 hsa-miR-548h 0 0 1
chr19:35270759|35271141 hsa-miR-206 1 0 0
chr19:35270759|35271141 hsa-miR-595 1 0 0
chr19:35270759|35271141 hsa-miR-648 1 0 0
chr19:35270759|35271141 hsa-miR-1182 1 0 0
chr19:35270759|35271141 hsa-miR-1268a 1 0 0
chr19:35270759|35271141 hsa-miR-2861 1 1 0
chr19:35270759|35271141 hsa-miR-3147 1 1 0
chr19:35270759|35271141 hsa-miR-3154 1 0 0
chr19:35270759|35271141 hsa-miR-1268b 1 0 0
chr19:35270759|35271141 hsa-miR-4476 1 0 0
chr19:35270759|35271141 hsa-miR-4481 1 0 0
chr19:35270759|35271141 hsa-miR-4516 0 1 0
chr19:35270759|35271141 hsa-miR-4534 1 0 0
chr19:35270759|35271141 hsa-miR-4721 1 0 0
chr19:35270759|35271141 hsa-miR-4739 1 0 0
chr19:35270759|35271141 hsa-miR-4767 1 0 0
chr19:35270759|35271141 hsa-miR-5090 1 0 0
chr19:35270759|35271141 hsa-miR-5193 1 0 0
chr19:35270759|35271141 hsa-miR-5194 1 1 0
chr19:35270759|35271141 hsa-miR-6088 0 1 0
chr19:35270759|35271141 hsa-miR-6745 1 0 0
chr19:35270759|35271141 hsa-miR-6860 1 1 0
chr19:35270759|35271141 hsa-miR-8060 1 1 0
chr19:35270759|35271141 hsa-miR-8082 1 1 0
chr19:35270759|35271141 hsa-miR-8085 1 0 0
chr19:35270759|35271141 hsa-miR-8089 1 0 0
chr19:35270759|35271141 hsa-miR-12117 1 0 0
chr19:35270759|35271141 hsa-miR-12118 1 0 0
chr19:35270759|35271141 hsa-miR-12120 1 0 0
chr19:35270759|35271141 hsa-miR-4433b-3p 1 0 0
chr19:35270759|35271141 hsa-miR-122-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6734-5p 0 1 0
chr19:35270759|35271141 hsa-miR-4731-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6765-5p 1 0 0
chr19:35270759|35271141 hsa-miR-7106-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6894-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6510-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6728-5p 0 1 0
chr19:35270759|35271141 hsa-miR-6833-5p 1 1 0
chr19:35270759|35271141 hsa-miR-5187-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6515-5p 1 1 0
chr19:35270759|35271141 hsa-miR-6089 1 0 0
chr19:35270759|35271141 hsa-miR-6880-5p 1 0 0
chr19:35270759|35271141 hsa-miR-4709-3p 1 0 0
chr19:35270759|35271141 hsa-miR-6840-5p 0 1 0
chr19:35270759|35271141 hsa-miR-6806-5p 1 0 0
chr19:35270759|35271141 hsa-miR-197-5p 1 0 0
chr19:35270759|35271141 hsa-miR-432-5p 1 0 0
chr19:35270759|35271141 hsa-miR-7845-5p 0 1 0
chr19:35270759|35271141 hsa-miR-6793-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6796-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6805-5p 1 0 0
chr19:35270759|35271141 hsa-miR-23a-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6798-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6760-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6782-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6765-3p 0 1 0
chr19:35270759|35271141 hsa-miR-193b-5p 1 1 0
chr19:35270759|35271141 hsa-miR-4783-3p 1 0 0
chr19:35270759|35271141 hsa-miR-4640-5p 1 0 0
chr19:35270759|35271141 hsa-miR-1228-5p 1 0 0
chr19:35270759|35271141 hsa-miR-4717-3p 1 0 0
chr19:35270759|35271141 hsa-miR-6749-5p 1 1 0
chr19:35270759|35271141 hsa-miR-6847-5p 0 1 0
chr19:35270759|35271141 hsa-miR-3202 0 1 0
chr19:35270759|35271141 hsa-miR-149-3p 1 0 0
chr19:35270759|35271141 hsa-miR-6830-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6824-5p 1 0 0
chr19:35270759|35271141 hsa-miR-516b-5p 1 1 0
chr19:35270759|35271141 hsa-miR-518c-5p 1 0 0
chr19:35270759|35271141 hsa-miR-5197-3p 0 1 0
chr19:35270759|35271141 hsa-miR-1207-5p 1 0 0
chr19:35270759|35271141 hsa-miR-4763-3p 1 0 0
chr19:35270759|35271141 hsa-miR-6752-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6813-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6851-5p 1 0 0
chr19:35270759|35271141 hsa-miR-7107-5p 1 0 0
chr19:35270759|35271141 hsa-miR-7110-5p 1 0 0
chr19:35270759|35271141 hsa-miR-1249-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6722-3p 1 1 0
chr19:35270759|35271141 hsa-miR-6774-5p 0 1 0
chr19:35270759|35271141 hsa-miR-6779-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6780a-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6797-5p 1 0 0
chr19:35270759|35271141 hsa-miR-5189-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6780b-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6836-5p 1 0 0
chr19:35270759|35271141 hsa-miR-10526-3p 1 0 0
chr19:35270759|35271141 hsa-miR-328-5p 1 0 0
chr19:35270759|35271141 hsa-miR-4649-5p 1 0 0
chr19:35270759|35271141 hsa-miR-4745-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6729-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6738-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6795-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6846-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6848-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6858-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6887-5p 1 0 0
chr19:35270759|35271141 hsa-miR-3187-5p 1 1 0
chr19:35270759|35271141 hsa-miR-4758-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6731-5p 1 0 0
chr19:35270759|35271141 hsa-miR-1914-3p 1 1 0
chr19:35270759|35271141 hsa-miR-6855-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6876-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6891-5p 1 0 0
chr19:35270759|35271141 hsa-miR-541-3p 1 0 0
chr19:35270759|35271141 hsa-miR-6785-5p 1 0 0
chr19:35270759|35271141 hsa-miR-6805-3p 1 0 0
chr19:35270759|35271141 hsa-miR-320a-3p 1 0 0
chr19:35270759|35271141 hsa-miR-320b 1 0 0
chr19:35270759|35271141 hsa-miR-6859-5p 1 0 0
chr19:35270759|35271141 hsa-miR-1301-5p 0 1 0
chr19:35270759|35271141 hsa-miR-3914 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:35270759|35271141
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MCTRAAETGKEKKHYTMCPLHANCPASTPETPLPSISTPGPPGVPCTYGE
Nucleotide Sequence ATGTGCACTAGAGCAGCAGAAACAGGCAAAGAAAAAAAACATTACACCATGTGCCCACTTCATGCTAACTGCCCAGCTTCTACTCCAGAAACCCCTCTTCCTTCCATTTCAACACCAGGCCCTCCAGGTGTCCCCTGCACATACGGAGAGTAA
CircID chr19:35270759|35271141
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MGSSPLISGCSGSINFSTRGGKKKGACIIAELFAQASAKY
Nucleotide Sequence CTGGGCTCTTCTCCTCTCATCTCGGGGTGTTCTGGTTCCATCAATTTTTCTACAAGAGGAGGAAAAAAAAAGGGGGCATGTATTATCGCAGAGCTGTTTGCCCAAGCATCTGCTAAGTATTAG
CircID chr19:35270759|35271141
ORF Type ORF3
Protein Length 78
Nucleotide Length 234
Protein Sequence MQGKSICKNKRHDTLCALEQQKQAKKKNITPCAHFMLTAQLLLQKPLFLPFQHQALQVSPAHTESKGVSGGRSSSVFL
Nucleotide Sequence TTGCAAGGTAAATCCATCTGCAAAAACAAAAGACATGATACTTTATGTGCACTAGAGCAGCAGAAACAGGCAAAGAAAAAAAACATTACACCATGTGCCCACTTCATGCTAACTGCCCAGCTTCTACTCCAGAAACCCCTCTTCCTTCCATTTCAACACCAGGCCCTCCAGGTGTCCCCTGCACATACGGAGAGTAAGGGTGTGTCCGGGGGGCGATCGTCCTCTGTGTTCCTG
CircID chr19:35270759|35271141
ORF Type ORF4
Protein Length 65
Nucleotide Length 198
Protein Sequence MCWALLLSSRGVLVPSIFLQEEEKKRGHVLSQSCLPKHLLSIRFENYLCKVNPSAKTKDMILYVH
Nucleotide Sequence TTGTGCTGGGCTCTTCTCCTCTCATCTCGGGGTGTTCTGGTTCCATCAATTTTTCTACAAGAGGAGGAAAAAAAAAGGGGGCATGTATTATCGCAGAGCTGTTTGCCCAAGCATCTGCTAAGTATTAGATTTGAAAATTATCTTTGCAAGGTAAATCCATCTGCAAAAACAAAAGACATGATACTTTATGTGCACTAG
CircID chr19:35270759|35271141
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MPSFYSRNPSSFHFNTRPSRCPLHIRRVRVCPGGDRPLCSC
Nucleotide Sequence CTGCCCAGCTTCTACTCCAGAAACCCCTCTTCCTTCCATTTCAACACCAGGCCCTCCAGGTGTCCCCTGCACATACGGAGAGTAAGGGTGTGTCCGGGGGGCGATCGTCCTCTGTGTTCCTGT
CircID chr19:35270759|35271141
ORF Type ORF6
Protein Length 32
Nucleotide Length 99
Protein Sequence MPVSAALVHIKYHVFCFCRWIYLAKIIFKSNT
Nucleotide Sequence TTGCCTGTTTCTGCTGCTCTAGTGCACATAAAGTATCATGTCTTTTGTTTTTGCAGATGGATTTACCTTGCAAAGATAATTTTCAAATCTAATACTTAG
CircID chr19:35270759|35271141
ORF Type ORF7
Protein Length 38
Nucleotide Length 114
Protein Sequence MGKQLCDNTCPLFFSSSCRKIDGTRTPRDERRRAQHNE
Nucleotide Sequence TTGGGCAAACAGCTCTGCGATAATACATGCCCCCTTTTTTTTTCCTCCTCTTGTAGAAAAATTGATGGAACCAGAACACCCCGAGATGAGAGGAGAAGAGCCCAGCACAACGAA
CircID chr19:35270759|35271141
ORF Type ORF8
Protein Length 41
Nucleotide Length 126
Protein Sequence MKWAHGVMFFFFACFCCSSAHKVSCLLFLQMDLPCKDNFQI
Nucleotide Sequence ATGAAGTGGGCACATGGTGTAATGTTTTTTTTCTTTGCCTGTTTCTGCTGCTCTAGTGCACATAAAGTATCATGTCTTTTGTTTTTGCAGATGGATTTACCTTGCAAAGATAATTTTCAAATCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab