CircRNA Information

General Information
circRNA Basic Information
CircID chr19:35546788|35547180
Strand -
CircType exon
Host Gene ENSG00000105677.10;
Algorism CIRI2;
Sequence TGCTGAGCTTATTATGTCCCGGTGCGTACAGCAGCCTGGAGCCCAGACCCCTGAGAAGGGACACCTGGGTTCCACGGGGGTGCTGGAGGGCAGGGGCTCAAAGCCTGGTGCTGAAGGTGTCTGAGTACTGGAGAATCCCATCCTTTGCCTTCCTCAGCTGCATTCCCCTATGGGTCGGAGCCCGGGGCATTGAGTTTGACTGGAAGTACATCCAGATGAGCATAGACTCCAACATCAGTCTGGTAGGCAGTCGTGCTCTCCCACATACACATTTCTGCTGGCGGCCATACTCCTCCCCAAGGCCTGGCCCCGACTTTCTGCCTCCCTCTAGGTCCATTACATCGTCGCGTCTGCTCAGGTCTGGATGATAACACGCTATGATCTGTACCACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:35546788|35547180 hsa-miR-29a-5p 0 0 1
chr19:35546788|35547180 hsa-miR-29a-3p 0 0 1
chr19:35546788|35547180 hsa-miR-29c-5p 0 0 1
chr19:35546788|35547180 hsa-miR-29c-3p 0 0 1
chr19:35546788|35547180 hsa-miR-380-5p 0 0 1
chr19:35546788|35547180 hsa-miR-380-3p 0 0 1
chr19:35546788|35547180 hsa-miR-492 0 0 1
chr19:35546788|35547180 hsa-miR-510-5p 0 0 1
chr19:35546788|35547180 hsa-miR-510-3p 0 0 1
chr19:35546788|35547180 hsa-miR-551a 0 0 1
chr19:35546788|35547180 hsa-miR-567 0 0 1
chr19:35546788|35547180 hsa-miR-551b-5p 0 0 1
chr19:35546788|35547180 hsa-miR-551b-3p 0 0 1
chr19:35546788|35547180 hsa-miR-612 0 0 1
chr19:35546788|35547180 hsa-miR-650 0 0 1
chr19:35546788|35547180 hsa-miR-1301-5p 0 0 1
chr19:35546788|35547180 hsa-miR-1301-3p 0 0 1
chr19:35546788|35547180 hsa-miR-766-5p 0 0 1
chr19:35546788|35547180 hsa-miR-766-3p 0 0 1
chr19:35546788|35547180 hsa-miR-765 0 0 1
chr19:35546788|35547180 hsa-miR-922 0 0 1
chr19:35546788|35547180 hsa-miR-939-5p 0 0 1
chr19:35546788|35547180 hsa-miR-939-3p 0 0 1
chr19:35546788|35547180 hsa-miR-297 0 0 1
chr19:35546788|35547180 hsa-miR-1266-5p 0 0 1
chr19:35546788|35547180 hsa-miR-1266-3p 0 0 1
chr19:35546788|35547180 hsa-miR-1321 0 1 1
chr19:35546788|35547180 hsa-miR-1324 0 0 1
chr19:35546788|35547180 hsa-miR-1827 0 0 1
chr19:35546788|35547180 hsa-miR-512-5p 0 0 1
chr19:35546788|35547180 hsa-miR-1225-3p 0 1 1
chr19:35546788|35547180 hsa-miR-145-5p 0 0 1
chr19:35546788|35547180 hsa-miR-770-5p 0 0 1
chr19:35546788|35547180 hsa-miR-299-3p 0 1 1
chr19:35546788|35547180 hsa-miR-1289 0 0 1
chr19:35546788|35547180 hsa-miR-338-3p 0 0 1
chr19:35546788|35547180 hsa-miR-515-5p 0 0 1
chr19:35546788|35547180 hsa-miR-521 0 0 1
chr19:35546788|35547180 hsa-miR-1233 0 0 1
chr19:35546788|35547180 hsa-miR-1285 0 0 1
chr19:35546788|35547180 hsa-miR-29b 0 0 1
chr19:35546788|35547180 hsa-miR-365 0 0 1
chr19:35546788|35547180 hsa-miR-422a 1 0 0
chr19:35546788|35547180 hsa-miR-663a 1 0 0
chr19:35546788|35547180 hsa-miR-298 1 0 0
chr19:35546788|35547180 hsa-miR-1202 1 0 0
chr19:35546788|35547180 hsa-miR-1263 1 0 0
chr19:35546788|35547180 hsa-miR-378b 1 0 0
chr19:35546788|35547180 hsa-miR-378c 1 0 0
chr19:35546788|35547180 hsa-miR-3657 0 1 0
chr19:35546788|35547180 hsa-miR-3916 0 1 0
chr19:35546788|35547180 hsa-miR-3937 0 1 0
chr19:35546788|35547180 hsa-miR-378e 1 0 0
chr19:35546788|35547180 hsa-miR-378f 1 0 0
chr19:35546788|35547180 hsa-miR-4468 0 1 0
chr19:35546788|35547180 hsa-miR-4488 1 0 0
chr19:35546788|35547180 hsa-miR-4497 1 0 0
chr19:35546788|35547180 hsa-miR-4510 0 1 0
chr19:35546788|35547180 hsa-miR-4535 1 1 0
chr19:35546788|35547180 hsa-miR-4634 1 0 0
chr19:35546788|35547180 hsa-miR-4689 1 0 0
chr19:35546788|35547180 hsa-miR-4739 1 1 0
chr19:35546788|35547180 hsa-miR-5047 0 1 0
chr19:35546788|35547180 hsa-miR-6127 1 0 0
chr19:35546788|35547180 hsa-miR-6133 1 1 0
chr19:35546788|35547180 hsa-miR-6860 1 0 0
chr19:35546788|35547180 hsa-miR-8085 0 1 0
chr19:35546788|35547180 hsa-miR-12115 1 0 0
chr19:35546788|35547180 hsa-miR-150-3p 1 1 0
chr19:35546788|35547180 hsa-miR-18a-3p 0 1 0
chr19:35546788|35547180 hsa-miR-4726-3p 0 1 0
chr19:35546788|35547180 hsa-miR-6765-5p 1 0 0
chr19:35546788|35547180 hsa-miR-7106-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6825-5p 1 1 0
chr19:35546788|35547180 hsa-miR-6720-5p 1 0 0
chr19:35546788|35547180 hsa-miR-1233-3p 0 1 0
chr19:35546788|35547180 hsa-miR-210-5p 0 1 0
chr19:35546788|35547180 hsa-miR-6728-5p 1 0 0
chr19:35546788|35547180 hsa-miR-139-3p 1 0 0
chr19:35546788|35547180 hsa-miR-1227-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6089 1 0 0
chr19:35546788|35547180 hsa-miR-6873-5p 0 1 0
chr19:35546788|35547180 hsa-miR-4755-3p 0 1 0
chr19:35546788|35547180 hsa-miR-6840-5p 1 1 0
chr19:35546788|35547180 hsa-miR-6727-5p 1 1 0
chr19:35546788|35547180 hsa-miR-23b-5p 0 1 0
chr19:35546788|35547180 hsa-miR-6716-5p 0 1 0
chr19:35546788|35547180 hsa-miR-6732-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6798-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6810-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6763-3p 0 1 0
chr19:35546788|35547180 hsa-miR-1229-5p 1 0 0
chr19:35546788|35547180 hsa-miR-1908-3p 1 0 0
chr19:35546788|35547180 hsa-miR-6784-5p 1 0 0
chr19:35546788|35547180 hsa-miR-4640-5p 1 0 0
chr19:35546788|35547180 hsa-miR-30c-2-3p 0 1 0
chr19:35546788|35547180 hsa-miR-4690-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6749-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6717-5p 1 1 0
chr19:35546788|35547180 hsa-miR-6824-5p 1 1 0
chr19:35546788|35547180 hsa-miR-3162-5p 0 1 0
chr19:35546788|35547180 hsa-miR-146b-3p 0 1 0
chr19:35546788|35547180 hsa-miR-3925-3p 0 1 0
chr19:35546788|35547180 hsa-miR-6769a-3p 0 1 0
chr19:35546788|35547180 hsa-miR-339-5p 0 1 0
chr19:35546788|35547180 hsa-miR-6892-5p 1 0 0
chr19:35546788|35547180 hsa-miR-4800-5p 1 1 0
chr19:35546788|35547180 hsa-miR-4776-5p 1 0 0
chr19:35546788|35547180 hsa-miR-3065-3p 0 1 0
chr19:35546788|35547180 hsa-miR-6869-5p 1 0 0
chr19:35546788|35547180 hsa-miR-1911-3p 0 1 0
chr19:35546788|35547180 hsa-miR-24-1-5p 0 1 0
chr19:35546788|35547180 hsa-miR-6871-3p 0 1 0
chr19:35546788|35547180 hsa-miR-6752-3p 0 1 0
chr19:35546788|35547180 hsa-miR-214-3p 1 0 0
chr19:35546788|35547180 hsa-miR-3200-5p 0 1 0
chr19:35546788|35547180 hsa-miR-490-5p 1 0 0
chr19:35546788|35547180 hsa-miR-181d-3p 0 1 0
chr19:35546788|35547180 hsa-miR-5587-3p 0 1 0
chr19:35546788|35547180 hsa-miR-5002-3p 0 1 0
chr19:35546788|35547180 hsa-miR-1233-5p 1 1 0
chr19:35546788|35547180 hsa-miR-1273h-5p 0 1 0
chr19:35546788|35547180 hsa-miR-6778-5p 1 1 0
chr19:35546788|35547180 hsa-miR-6816-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6775-5p 1 0 0
chr19:35546788|35547180 hsa-miR-1343-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6743-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6754-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6819-5p 1 0 0
chr19:35546788|35547180 hsa-miR-1249-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6763-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6797-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6808-5p 0 1 0
chr19:35546788|35547180 hsa-miR-7111-5p 1 0 0
chr19:35546788|35547180 hsa-miR-4728-5p 1 1 0
chr19:35546788|35547180 hsa-miR-5189-5p 1 1 0
chr19:35546788|35547180 hsa-miR-328-5p 1 1 0
chr19:35546788|35547180 hsa-miR-4685-5p 1 1 0
chr19:35546788|35547180 hsa-miR-4726-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6729-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6848-5p 1 0 0
chr19:35546788|35547180 hsa-miR-3187-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6511a-5p 1 1 0
chr19:35546788|35547180 hsa-miR-10396a-3p 1 1 0
chr19:35546788|35547180 hsa-miR-10396b-3p 1 1 0
chr19:35546788|35547180 hsa-miR-30c-1-3p 0 1 0
chr19:35546788|35547180 hsa-miR-6731-5p 0 1 0
chr19:35546788|35547180 hsa-miR-6855-5p 0 1 0
chr19:35546788|35547180 hsa-miR-6877-3p 0 1 0
chr19:35546788|35547180 hsa-miR-4646-5p 1 0 0
chr19:35546788|35547180 hsa-miR-378a-3p 1 0 0
chr19:35546788|35547180 hsa-miR-518d-5p 0 1 0
chr19:35546788|35547180 hsa-miR-518f-5p 0 1 0
chr19:35546788|35547180 hsa-miR-520c-5p 0 1 0
chr19:35546788|35547180 hsa-miR-526a-5p 0 1 0
chr19:35546788|35547180 hsa-miR-5009-5p 1 0 0
chr19:35546788|35547180 hsa-miR-6801-3p 0 1 0
chr19:35546788|35547180 hsa-miR-6810-3p 0 1 0
chr19:35546788|35547180 hsa-miR-10400-3p 0 1 0
chr19:35546788|35547180 hsa-miR-6819-3p 0 1 0
chr19:35546788|35547180 hsa-miR-4691-5p 1 0 0
chr19:35546788|35547180 hsa-miR-502-3p 0 1 0
chr19:35546788|35547180 hsa-miR-378d 1 0 0
chr19:35546788|35547180 hsa-miR-126-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:35546788|35547180
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MSTGESHPLPSSAAFPYGSEPGALSLTGSTSR
Nucleotide Sequence CTGAGTACTGGAGAATCCCATCCTTTGCCTTCCTCAGCTGCATTCCCCTATGGGTCGGAGCCCGGGGCATTGAGTTTGACTGGAAGTACATCCAGATGA
CircID chr19:35546788|35547180
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MAPTFCLPLGPLHRRVCSGLDDNTL
Nucleotide Sequence CTGGCCCCGACTTTCTGCCTCCCTCTAGGTCCATTACATCGTCGCGTCTGCTCAGGTCTGGATGATAACACGCTATGA
CircID chr19:35546788|35547180
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MSRCVQQPGAQTPEKGHLGSTGVLEGRGSKPGAEGV
Nucleotide Sequence ATGTCCCGGTGCGTACAGCAGCCTGGAGCCCAGACCCCTGAGAAGGGACACCTGGGTTCCACGGGGGTGCTGGAGGGCAGGGGCTCAAAGCCTGGTGCTGAAGGTGTCTGA
CircID chr19:35546788|35547180
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MEVHPDEHRLQHQSGRQSCSPTYTFLLAAILLPKAWPRLSASL
Nucleotide Sequence CTGGAAGTACATCCAGATGAGCATAGACTCCAACATCAGTCTGGTAGGCAGTCGTGCTCTCCCACATACACATTTCTGCTGGCGGCCATACTCCTCCCCAAGGCCTGGCCCCGACTTTCTGCCTCCCTCTAG
CircID chr19:35546788|35547180
ORF Type ORF5
Protein Length 121
Nucleotide Length 366
Protein Sequence LSLLCPGAYSSLEPRPLRRDTWVPRGCWRAGAQSLVLKVSEYWRIPSFAFLSCIPLWVGARGIEFDWKYIQMSIDSNISLVGSRALPHTHFCWRPYSSPRPGPDFLPPSRSITSSRLLRSG
Nucleotide Sequence CTGAGCTTATTATGTCCCGGTGCGTACAGCAGCCTGGAGCCCAGACCCCTGAGAAGGGACACCTGGGTTCCACGGGGGTGCTGGAGGGCAGGGGCTCAAAGCCTGGTGCTGAAGGTGTCTGAGTACTGGAGAATCCCATCCTTTGCCTTCCTCAGCTGCATTCCCCTATGGGTCGGAGCCCGGGGCATTGAGTTTGACTGGAAGTACATCCAGATGAGCATAGACTCCAACATCAGTCTGGTAGGCAGTCGTGCTCTCCCACATACACATTTCTGCTGGCGGCCATACTCCTCCCCAAGGCCTGGCCCCGACTTTCTGCCTCCCTCTAGGTCCATTACATCGTCGCGTCTGCTCAGGTCTGGATGA
CircID chr19:35546788|35547180
ORF Type ORF6
Protein Length 47
Nucleotide Length 141
Protein Sequence MGFSSTQTPSAPGFEPLPSSTPVEPRCPFSGVWAPGCCTHRDIISSA
Nucleotide Sequence ATGGGATTCTCCAGTACTCAGACACCTTCAGCACCAGGCTTTGAGCCCCTGCCCTCCAGCACCCCCGTGGAACCCAGGTGTCCCTTCTCAGGGGTCTGGGCTCCAGGCTGCTGTACGCACCGGGACATAATAAGCTCAGCA
CircID chr19:35546788|35547180
ORF Type ORF7
Protein Length 34
Nucleotide Length 105
Protein Sequence MCMWESTTAYQTDVGVYAHLDVLPVKLNAPGSDP
Nucleotide Sequence ATGTGTATGTGGGAGAGCACGACTGCCTACCAGACTGATGTTGGAGTCTATGCTCATCTGGATGTACTTCCAGTCAAACTCAATGCCCCGGGCTCCGACCCATAG
CircID chr19:35546788|35547180
ORF Type ORF8
Protein Length 29
Nucleotide Length 90
Protein Sequence MSPCPPAPPWNPGVPSQGSGLQAAVRTGT
Nucleotide Sequence TTGAGCCCCTGCCCTCCAGCACCCCCGTGGAACCCAGGTGTCCCTTCTCAGGGGTCTGGGCTCCAGGCTGCTGTACGCACCGGGACATAA
CircID chr19:35546788|35547180
ORF Type ORF9
Protein Length 86
Nucleotide Length 261
Protein Sequence MSRRDDVMDLEGGRKSGPGLGEEYGRQQKCVCGRARLPTRLMLESMLIWMYFQSNSMPRAPTHRGMQLRKAKDGILQYSDTFSTRL
Nucleotide Sequence CTGAGCAGACGCGACGATGTAATGGACCTAGAGGGAGGCAGAAAGTCGGGGCCAGGCCTTGGGGAGGAGTATGGCCGCCAGCAGAAATGTGTATGTGGGAGAGCACGACTGCCTACCAGACTGATGTTGGAGTCTATGCTCATCTGGATGTACTTCCAGTCAAACTCAATGCCCCGGGCTCCGACCCATAGGGGAATGCAGCTGAGGAAGGCAAAGGATGGGATTCTCCAGTACTCAGACACCTTCAGCACCAGGCTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab