CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3573961|3574257
Strand +
CircType exon
Host Gene ENSG00000161091.11;
Algorism CIRI2;
Sequence CCGGAAAAGATGGAGGTAGGGCCCGGTCAGCAGTCGGGACACGGTGGGTTAGAGGGATCCCTGGCCAGGGGTGAGGGGATCTGAGGAACTATGGGCCGAGGTTTGAGTACAGGGTTGGCGTTGACTTCGGTTGTGGGCGTGGCCTCTGCTTGGTGGGCGTGGTTTTCTGCTGGAGAACGGGCCCACAGGACCAAGGGGAGGGTGCCGCCCCCAAGGAGTGGAAGTGGGCGGGACCTTAGAGTGGGCAGAGCTGGCATTGTGCGGTGGGCGGGGCCTGGACTTAGAGTGGCAGAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3573961|3574257 hsa-miR-10a-5p 0 0 1
chr19:3573961|3574257 hsa-miR-10a-3p 0 0 1
chr19:3573961|3574257 hsa-miR-10b-5p 0 0 1
chr19:3573961|3574257 hsa-miR-10b-3p 0 0 1
chr19:3573961|3574257 hsa-miR-133b 0 0 1
chr19:3573961|3574257 hsa-miR-766-5p 0 0 1
chr19:3573961|3574257 hsa-miR-766-3p 0 0 1
chr19:3573961|3574257 hsa-miR-888-5p 0 0 1
chr19:3573961|3574257 hsa-miR-888-3p 0 0 1
chr19:3573961|3574257 hsa-miR-922 0 0 1
chr19:3573961|3574257 hsa-miR-1180-5p 0 0 1
chr19:3573961|3574257 hsa-miR-1180-3p 0 0 1
chr19:3573961|3574257 hsa-miR-1202 0 0 1
chr19:3573961|3574257 hsa-miR-1275 0 0 1
chr19:3573961|3574257 hsa-miR-486-5p 0 0 1
chr19:3573961|3574257 hsa-miR-296-5p 1 0 1
chr19:3573961|3574257 hsa-miR-331-3p 0 0 1
chr19:3573961|3574257 hsa-miR-628-5p 0 0 1
chr19:3573961|3574257 hsa-miR-338-3p 0 0 1
chr19:3573961|3574257 hsa-miR-324-3p 1 0 1
chr19:3573961|3574257 hsa-miR-483-3p 0 0 1
chr19:3573961|3574257 hsa-miR-515-5p 0 0 1
chr19:3573961|3574257 hsa-miR-371-5p 0 0 1
chr19:3573961|3574257 hsa-miR-1280 0 0 1
chr19:3573961|3574257 hsa-miR-642 0 0 1
chr19:3573961|3574257 hsa-miR-768-3p 0 0 1
chr19:3573961|3574257 hsa-miR-133a 0 0 1
chr19:3573961|3574257 hsa-miR-631 1 0 0
chr19:3573961|3574257 hsa-miR-1913 1 0 0
chr19:3573961|3574257 hsa-miR-4449 1 0 0
chr19:3573961|3574257 hsa-miR-8077 1 0 0
chr19:3573961|3574257 hsa-miR-9899 1 0 0
chr19:3573961|3574257 hsa-miR-12121 1 0 0
chr19:3573961|3574257 hsa-miR-668-3p 1 0 0
chr19:3573961|3574257 hsa-miR-4665-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6720-5p 1 0 0
chr19:3573961|3574257 hsa-miR-6892-3p 1 0 0
chr19:3573961|3574257 hsa-miR-210-5p 1 0 0
chr19:3573961|3574257 hsa-miR-6881-3p 1 0 0
chr19:3573961|3574257 hsa-miR-4728-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6858-3p 1 0 0
chr19:3573961|3574257 hsa-miR-4713-5p 1 0 0
chr19:3573961|3574257 hsa-miR-4763-5p 1 0 0
chr19:3573961|3574257 hsa-miR-7108-3p 1 0 0
chr19:3573961|3574257 hsa-miR-4707-3p 1 0 0
chr19:3573961|3574257 hsa-miR-1908-3p 1 0 0
chr19:3573961|3574257 hsa-miR-5001-3p 1 0 0
chr19:3573961|3574257 hsa-miR-7111-3p 1 0 0
chr19:3573961|3574257 hsa-miR-4640-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6825-3p 1 0 0
chr19:3573961|3574257 hsa-miR-1237-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6743-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6813-3p 1 0 0
chr19:3573961|3574257 hsa-miR-4758-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6752-3p 1 0 0
chr19:3573961|3574257 hsa-miR-1296-5p 1 0 0
chr19:3573961|3574257 hsa-miR-1914-5p 1 0 0
chr19:3573961|3574257 hsa-miR-6773-3p 1 0 0
chr19:3573961|3574257 hsa-miR-4749-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6777-3p 1 0 0
chr19:3573961|3574257 hsa-miR-3184-3p 1 0 0
chr19:3573961|3574257 hsa-miR-4433a-5p 1 0 0
chr19:3573961|3574257 hsa-miR-4750-3p 1 0 0
chr19:3573961|3574257 hsa-miR-3173-5p 1 0 0
chr19:3573961|3574257 hsa-miR-642a-5p 1 0 0
chr19:3573961|3574257 hsa-miR-6732-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6790-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6799-3p 1 0 0
chr19:3573961|3574257 hsa-miR-1199-5p 1 0 0
chr19:3573961|3574257 hsa-miR-6862-3p 1 0 0
chr19:3573961|3574257 hsa-miR-10401-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6801-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6805-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6775-3p 1 0 0
chr19:3573961|3574257 hsa-miR-10392-3p 1 0 0
chr19:3573961|3574257 hsa-miR-6781-3p 1 0 0
chr19:3573961|3574257 hsa-miR-664b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:3573961|3574257
ORF Type ORF1
Protein Length 69
Nucleotide Length 207
Protein Sequence MGRGLSTGLALTSVVGVASAWWAWFSAGERAHRTKGRVPPPRSGSGRDLRVGRAGIVRWAGPGLRVAED
Nucleotide Sequence ATGGGCCGAGGTTTGAGTACAGGGTTGGCGTTGACTTCGGTTGTGGGCGTGGCCTCTGCTTGGTGGGCGTGGTTTTCTGCTGGAGAACGGGCCCACAGGACCAAGGGGAGGGTGCCGCCCCCAAGGAGTGGAAGTGGGCGGGACCTTAGAGTGGGCAGAGCTGGCATTGTGCGGTGGGCGGGGCCTGGACTTAGAGTGGCAGAGGAC
CircID chr19:3573961|3574257
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MWAWPLLGGRGFLLENGPTGPRGGCRPQGVEVGGTLEWAELALCGGRGLDLEWQR
Nucleotide Sequence TTGTGGGCGTGGCCTCTGCTTGGTGGGCGTGGTTTTCTGCTGGAGAACGGGCCCACAGGACCAAGGGGAGGGTGCCGCCCCCAAGGAGTGGAAGTGGGCGGGACCTTAGAGTGGGCAGAGCTGGCATTGTGCGGTGGGCGGGGCCTGGACTTAGAGTGGCAGAGG
CircID chr19:3573961|3574257
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence MRNYGPRFEYRVGVDFGCGRGLCLVGVVFCWRTGPQDQGEGAAPKEWKWAGP
Nucleotide Sequence CTGAGGAACTATGGGCCGAGGTTTGAGTACAGGGTTGGCGTTGACTTCGGTTGTGGGCGTGGCCTCTGCTTGGTGGGCGTGGTTTTCTGCTGGAGAACGGGCCCACAGGACCAAGGGGAGGGTGCCGCCCCCAAGGAGTGGAAGTGGGCGGGACCTTAG
CircID chr19:3573961|3574257
ORF Type ORF4
Protein Length 76
Nucleotide Length 231
Protein Sequence MPALPTLRSRPLPLLGGGTLPLVLWARSPAENHAHQAEATPTTEVNANPVLKPRPIVPQIPSPLARDPSNPPCPDC
Nucleotide Sequence ATGCCAGCTCTGCCCACTCTAAGGTCCCGCCCACTTCCACTCCTTGGGGGCGGCACCCTCCCCTTGGTCCTGTGGGCCCGTTCTCCAGCAGAAAACCACGCCCACCAAGCAGAGGCCACGCCCACAACCGAAGTCAACGCCAACCCTGTACTCAAACCTCGGCCCATAGTTCCTCAGATCCCCTCACCCCTGGCCAGGGATCCCTCTAACCCACCGTGTCCCGACTGCTGA
CircID chr19:3573961|3574257
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence MGAAPSPWSCGPVLQQKTTPTKQRPRPQPKSTPTLYSNLGP
Nucleotide Sequence TTGGGGGCGGCACCCTCCCCTTGGTCCTGTGGGCCCGTTCTCCAGCAGAAAACCACGCCCACCAAGCAGAGGCCACGCCCACAACCGAAGTCAACGCCAACCCTGTACTCAAACCTCGGCCCATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab