CircRNA Information

General Information
circRNA Basic Information
CircID chr19:35896503|35896821
Strand +
CircType exon
Host Gene ENSG00000167604.12;
Algorism CIRI2;
Sequence CTGTTTGCGGCTCGGGGGCTGCGCTGGGCGGCATATGCTGCGGCTGAGGTGCTCCAGGTGTACCGGCGTCTTGACATTCGTGAGCATAAGGGCAAGGTGAGGCTTGGGGCCTGAACTCTCCTGGGTTCAGGGGAGGAAGGAGCCTGGGGCCTGGACCCCTGGATCCTAGAGAAGAGGGGAATGGGGGGTGAGCTCCTGGGGCTGAGGGGGGATGGGGCTGGGAGCCTGGTTTTCTGACGGGAGGGAACCAGGAGCCCAACCTGACTTCTCCTGTGGCCTGCAGACCCCTCTCCTGGTGGCGGCTGCTGCCAACCAGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:35896503|35896821 hsa-miR-107 0 0 1
chr19:35896503|35896821 hsa-miR-484 0 0 1
chr19:35896503|35896821 hsa-miR-619-5p 0 0 1
chr19:35896503|35896821 hsa-miR-619-3p 0 0 1
chr19:35896503|35896821 hsa-miR-874-5p 0 0 1
chr19:35896503|35896821 hsa-miR-874-3p 0 0 1
chr19:35896503|35896821 hsa-miR-708-5p 0 0 1
chr19:35896503|35896821 hsa-miR-708-3p 0 0 1
chr19:35896503|35896821 hsa-miR-665 0 0 1
chr19:35896503|35896821 hsa-miR-938 0 0 1
chr19:35896503|35896821 hsa-miR-942-5p 0 0 1
chr19:35896503|35896821 hsa-miR-942-3p 0 0 1
chr19:35896503|35896821 hsa-miR-1178-5p 0 0 1
chr19:35896503|35896821 hsa-miR-1178-3p 0 0 1
chr19:35896503|35896821 hsa-miR-1205 0 0 1
chr19:35896503|35896821 hsa-miR-1247-5p 0 0 1
chr19:35896503|35896821 hsa-miR-1247-3p 0 0 1
chr19:35896503|35896821 hsa-miR-1251-5p 0 0 1
chr19:35896503|35896821 hsa-miR-1251-3p 0 0 1
chr19:35896503|35896821 hsa-miR-615-3p 0 0 1
chr19:35896503|35896821 hsa-miR-615-5p 0 0 1
chr19:35896503|35896821 hsa-miR-885-3p 0 0 1
chr19:35896503|35896821 hsa-miR-1184 0 0 1
chr19:35896503|35896821 hsa-miR-28-5p 0 0 1
chr19:35896503|35896821 hsa-miR-331-3p 0 0 1
chr19:35896503|35896821 hsa-miR-642 0 0 1
chr19:35896503|35896821 hsa-miR-103 0 0 1
chr19:35896503|35896821 hsa-miR-1183 1 0 0
chr19:35896503|35896821 hsa-miR-4284 1 0 0
chr19:35896503|35896821 hsa-miR-3943 1 0 0
chr19:35896503|35896821 hsa-miR-4734 1 0 0
chr19:35896503|35896821 hsa-miR-6081 1 0 0
chr19:35896503|35896821 hsa-miR-6749-3p 1 0 0
chr19:35896503|35896821 hsa-miR-4747-3p 1 0 0
chr19:35896503|35896821 hsa-miR-4665-3p 1 0 0
chr19:35896503|35896821 hsa-miR-3157-5p 1 0 0
chr19:35896503|35896821 hsa-miR-6787-3p 1 0 0
chr19:35896503|35896821 hsa-miR-1915-5p 1 0 0
chr19:35896503|35896821 hsa-miR-6845-3p 1 0 0
chr19:35896503|35896821 hsa-miR-7109-3p 1 0 0
chr19:35896503|35896821 hsa-miR-4707-3p 1 0 0
chr19:35896503|35896821 hsa-miR-1908-3p 1 0 0
chr19:35896503|35896821 hsa-miR-4783-5p 1 0 0
chr19:35896503|35896821 hsa-miR-4640-3p 1 0 0
chr19:35896503|35896821 hsa-miR-339-5p 1 0 0
chr19:35896503|35896821 hsa-miR-6870-3p 1 0 0
chr19:35896503|35896821 hsa-miR-1236-3p 1 0 0
chr19:35896503|35896821 hsa-miR-345-5p 1 0 0
chr19:35896503|35896821 hsa-miR-4758-3p 1 0 0
chr19:35896503|35896821 hsa-miR-1224-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6746-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6758-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6501-3p 1 0 0
chr19:35896503|35896821 hsa-miR-3670 1 0 0
chr19:35896503|35896821 hsa-miR-3620-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6798-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6729-3p 1 0 0
chr19:35896503|35896821 hsa-miR-7158-5p 1 0 0
chr19:35896503|35896821 hsa-miR-6750-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6731-3p 1 0 0
chr19:35896503|35896821 hsa-miR-4763-3p 1 0 0
chr19:35896503|35896821 hsa-miR-10396a-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6511a-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6784-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6862-3p 1 0 0
chr19:35896503|35896821 hsa-miR-10392-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6511b-3p 1 0 0
chr19:35896503|35896821 hsa-miR-6500-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:35896503|35896821
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence LFAARGLRWAAYAAAEVLQVYRRLDIREHKGKVRLGA
Nucleotide Sequence CTGTTTGCGGCTCGGGGGCTGCGCTGGGCGGCATATGCTGCGGCTGAGGTGCTCCAGGTGTACCGGCGTCTTGACATTCGTGAGCATAAGGGCAAGGTGAGGCTTGGGGCCTGA
CircID chr19:35896503|35896821
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MGSGEEGAWGLDPWILEKRGMGGELLGLRGDGAGSLVF
Nucleotide Sequence CTGGGTTCAGGGGAGGAAGGAGCCTGGGGCCTGGACCCCTGGATCCTAGAGAAGAGGGGAATGGGGGGTGAGCTCCTGGGGCTGAGGGGGGATGGGGCTGGGAGCCTGGTTTTCTGA
CircID chr19:35896503|35896821
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MRLGGCAGRHMLRLRCSRCTGVLTFVSIRAR
Nucleotide Sequence TTGCGGCTCGGGGGCTGCGCTGGGCGGCATATGCTGCGGCTGAGGTGCTCCAGGTGTACCGGCGTCTTGACATTCGTGAGCATAAGGGCAAGGTGA
CircID chr19:35896503|35896821
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MGLGAWFSDGREPGAQPDFSCGLQTPLLVAAAANQP
Nucleotide Sequence ATGGGGCTGGGAGCCTGGTTTTCTGACGGGAGGGAACCAGGAGCCCAACCTGACTTCTCCTGTGGCCTGCAGACCCCTCTCCTGGTGGCGGCTGCTGCCAACCAGCCC
CircID chr19:35896503|35896821
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MNSPGFRGGRSLGPGPLDPREEGNGG
Nucleotide Sequence CTGAACTCTCCTGGGTTCAGGGGAGGAAGGAGCCTGGGGCCTGGACCCCTGGATCCTAGAGAAGAGGGGAATGGGGGGTGA
CircID chr19:35896503|35896821
ORF Type ORF6
Protein Length 28
Nucleotide Length 84
Protein Sequence MTGGNQEPNLTSPVACRPLSWWRLLPTS
Nucleotide Sequence CTGACGGGAGGGAACCAGGAGCCCAACCTGACTTCTCCTGTGGCCTGCAGACCCCTCTCCTGGTGGCGGCTGCTGCCAACCAGC
CircID chr19:35896503|35896821
ORF Type ORF7
Protein Length 105
Nucleotide Length 315
Protein Sequence MVGSSRHQERGLQATGEVRLGSWFPPVRKPGSQPHPPSAPGAHPPFPSSLGSRGPGPRLLPPLNPGEFRPQASPCPYAHECQDAGTPGAPQPQHMPPSAAPEPQT
Nucleotide Sequence CTGGTTGGCAGCAGCCGCCACCAGGAGAGGGGTCTGCAGGCCACAGGAGAAGTCAGGTTGGGCTCCTGGTTCCCTCCCGTCAGAAAACCAGGCTCCCAGCCCCATCCCCCCTCAGCCCCAGGAGCTCACCCCCCATTCCCCTCTTCTCTAGGATCCAGGGGTCCAGGCCCCAGGCTCCTTCCTCCCCTGAACCCAGGAGAGTTCAGGCCCCAAGCCTCACCTTGCCCTTATGCTCACGAATGTCAAGACGCCGGTACACCTGGAGCACCTCAGCCGCAGCATATGCCGCCCAGCGCAGCCCCCGAGCCGCAAACA
CircID chr19:35896503|35896821
ORF Type ORF8
Protein Length 48
Nucleotide Length 147
Protein Sequence MAAAATRRGVCRPQEKSGWAPGSLPSENQAPSPIPPQPQELTPHSPLL
Nucleotide Sequence TTGGCAGCAGCCGCCACCAGGAGAGGGGTCTGCAGGCCACAGGAGAAGTCAGGTTGGGCTCCTGGTTCCCTCCCGTCAGAAAACCAGGCTCCCAGCCCCATCCCCCCTCAGCCCCAGGAGCTCACCCCCCATTCCCCTCTTCTCTAG
CircID chr19:35896503|35896821
ORF Type ORF9
Protein Length 29
Nucleotide Length 87
Protein Sequence MLTNVKTPVHLEHLSRSICRPAQPPSRKQ
Nucleotide Sequence ATGCTCACGAATGTCAAGACGCCGGTACACCTGGAGCACCTCAGCCGCAGCATATGCCGCCCAGCGCAGCCCCCGAGCCGCAAACAG
CircID chr19:35896503|35896821
ORF Type ORF10
Protein Length 83
Nucleotide Length 249
Protein Sequence MVPSRQKTRLPAPSPLSPRSSPPIPLFSRIQGSRPQAPSSPEPRRVQAPSLTLPLCSRMSRRRYTWSTSAAAYAAQRSPRAAN
Nucleotide Sequence CTGGTTCCCTCCCGTCAGAAAACCAGGCTCCCAGCCCCATCCCCCCTCAGCCCCAGGAGCTCACCCCCCATTCCCCTCTTCTCTAGGATCCAGGGGTCCAGGCCCCAGGCTCCTTCCTCCCCTGAACCCAGGAGAGTTCAGGCCCCAAGCCTCACCTTGCCCTTATGCTCACGAATGTCAAGACGCCGGTACACCTGGAGCACCTCAGCCGCAGCATATGCCGCCCAGCGCAGCCCCCGAGCCGCAAAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab