CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3631365|3631508
Strand -
CircType exon
Host Gene ENSG00000186111.7;
Algorism CIRI2;
Sequence CTCTGCCCCTGCCTCCCCGGGGGGTGCCTGCTGGGTGTCCTTCGGAGGGACAGGGCGGGGGCTGATGGGTGGATGCCCGGTGCCAGCAGATGAGCACCAGGCTGTGAACTGAGGCCAAGGTCGCTTCCCAGGGCTGGACAGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3631365|3631508 hsa-miR-27a-5p 0 0 1
chr19:3631365|3631508 hsa-miR-27a-3p 0 0 1
chr19:3631365|3631508 hsa-miR-198 0 0 1
chr19:3631365|3631508 hsa-miR-214-5p 0 0 1
chr19:3631365|3631508 hsa-miR-214-3p 0 0 1
chr19:3631365|3631508 hsa-miR-27b-5p 0 0 1
chr19:3631365|3631508 hsa-miR-27b-3p 0 0 1
chr19:3631365|3631508 hsa-miR-650 0 0 1
chr19:3631365|3631508 hsa-miR-940 0 0 1
chr19:3631365|3631508 hsa-miR-1197 0 0 1
chr19:3631365|3631508 hsa-miR-1827 0 0 1
chr19:3631365|3631508 hsa-miR-486-3p 0 0 1
chr19:3631365|3631508 hsa-miR-146b-3p 0 0 1
chr19:3631365|3631508 hsa-miR-339-5p 0 1 1
chr19:3631365|3631508 hsa-miR-513a-5p 0 0 1
chr19:3631365|3631508 hsa-miR-1207-5p 0 0 1
chr19:3631365|3631508 hsa-miR-661 1 0 0
chr19:3631365|3631508 hsa-miR-1470 0 1 0
chr19:3631365|3631508 hsa-miR-548q 0 1 0
chr19:3631365|3631508 hsa-miR-4292 0 1 0
chr19:3631365|3631508 hsa-miR-3661 1 0 0
chr19:3631365|3631508 hsa-miR-3907 0 1 0
chr19:3631365|3631508 hsa-miR-3943 0 1 0
chr19:3631365|3631508 hsa-miR-4686 0 1 0
chr19:3631365|3631508 hsa-miR-4767 1 0 0
chr19:3631365|3631508 hsa-miR-6071 0 1 0
chr19:3631365|3631508 hsa-miR-9899 1 0 0
chr19:3631365|3631508 hsa-miR-500b-3p 0 1 0
chr19:3631365|3631508 hsa-miR-212-5p 0 1 0
chr19:3631365|3631508 hsa-miR-6825-5p 0 1 0
chr19:3631365|3631508 hsa-miR-6720-5p 1 1 0
chr19:3631365|3631508 hsa-miR-766-3p 1 0 0
chr19:3631365|3631508 hsa-miR-6840-5p 0 1 0
chr19:3631365|3631508 hsa-miR-874-3p 0 1 0
chr19:3631365|3631508 hsa-miR-6726-3p 0 1 0
chr19:3631365|3631508 hsa-miR-7108-3p 0 1 0
chr19:3631365|3631508 hsa-miR-6769a-3p 0 1 0
chr19:3631365|3631508 hsa-miR-6813-3p 0 1 0
chr19:3631365|3631508 hsa-miR-6748-3p 0 1 0
chr19:3631365|3631508 hsa-miR-4763-3p 0 1 0
chr19:3631365|3631508 hsa-miR-6787-5p 0 1 0
chr19:3631365|3631508 hsa-miR-6893-5p 0 1 0
chr19:3631365|3631508 hsa-miR-6743-5p 0 1 0
chr19:3631365|3631508 hsa-miR-1909-3p 0 1 0
chr19:3631365|3631508 hsa-miR-6777-5p 0 1 0
chr19:3631365|3631508 hsa-miR-6889-5p 0 1 0
chr19:3631365|3631508 hsa-miR-4646-5p 0 1 0
chr19:3631365|3631508 hsa-miR-4747-5p 1 0 0
chr19:3631365|3631508 hsa-miR-6791-5p 0 1 0
chr19:3631365|3631508 hsa-miR-6753-3p 0 1 0
chr19:3631365|3631508 hsa-miR-7107-3p 0 1 0
chr19:3631365|3631508 hsa-miR-6512-3p 0 1 0
chr19:3631365|3631508 hsa-miR-3619-5p 0 1 0
chr19:3631365|3631508 hsa-miR-4670-5p 0 1 0
chr19:3631365|3631508 hsa-miR-549a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:3631365|3631508
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MSSPGKRPWPQFTAWCSSAGTGHPPISPRPVPPKDTQQAPPGEAGAE
Nucleotide Sequence CTGTCCAGCCCTGGGAAGCGACCTTGGCCTCAGTTCACAGCCTGGTGCTCATCTGCTGGCACCGGGCATCCACCCATCAGCCCCCGCCCTGTCCCTCCGAAGGACACCCAGCAGGCACCCCCCGGGGAGGCAGGGGCAGAG
CircID chr19:3631365|3631508
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MGSDLGLSSQPGAHLLAPGIHPSAPALSLRRTPSRHPPGRQGQ
Nucleotide Sequence CTGGGAAGCGACCTTGGCCTCAGTTCACAGCCTGGTGCTCATCTGCTGGCACCGGGCATCCACCCATCAGCCCCCGCCCTGTCCCTCCGAAGGACACCCAGCAGGCACCCCCCGGGGAGGCAGGGGCAG
CircID chr19:3631365|3631508
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MASVHSLVLICWHRASTHQPPPCPSEGHPAGTPRGGRGR
Nucleotide Sequence TTGGCCTCAGTTCACAGCCTGGTGCTCATCTGCTGGCACCGGGCATCCACCCATCAGCCCCCGCCCTGTCCCTCCGAAGGACACCCAGCAGGCACCCCCCGGGGAGGCAGGGGCAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab