CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3632428|3632555
Strand +
CircType exon
Host Gene ENSG00000186111.7;
Algorism CIRI2;
Sequence TCAGCAGCTATGTTCCCGCCGCAGTGGGGCCCTGACGCCCACCTCCCAGGTGCCCCTCGAGCAAAAACCTCTGGCGCCTCCAATCCAGACCCACCACAGCTGGAGGGCCAGGCCTCCTCTTCCCCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3632428|3632555 hsa-miR-22-5p 0 0 1
chr19:3632428|3632555 hsa-miR-22-3p 0 0 1
chr19:3632428|3632555 hsa-miR-328-5p 0 0 1
chr19:3632428|3632555 hsa-miR-328-3p 0 0 1
chr19:3632428|3632555 hsa-miR-585-5p 0 0 1
chr19:3632428|3632555 hsa-miR-585-3p 0 0 1
chr19:3632428|3632555 hsa-miR-650 0 0 1
chr19:3632428|3632555 hsa-miR-766-5p 0 0 1
chr19:3632428|3632555 hsa-miR-766-3p 0 0 1
chr19:3632428|3632555 hsa-miR-541-5p 0 0 1
chr19:3632428|3632555 hsa-miR-541-3p 0 0 1
chr19:3632428|3632555 hsa-miR-1291 0 0 1
chr19:3632428|3632555 hsa-miR-129-5p 0 0 1
chr19:3632428|3632555 hsa-miR-296-5p 0 0 1
chr19:3632428|3632555 hsa-miR-193a-5p 0 0 1
chr19:3632428|3632555 hsa-miR-423-5p 0 0 1
chr19:3632428|3632555 hsa-miR-654-5p 0 0 1
chr19:3632428|3632555 hsa-miR-1268 0 0 1
chr19:3632428|3632555 hsa-miR-768-5p 0 0 1
chr19:3632428|3632555 hsa-miR-658 1 0 0
chr19:3632428|3632555 hsa-miR-2861 1 0 0
chr19:3632428|3632555 hsa-miR-3196 1 0 0
chr19:3632428|3632555 hsa-miR-3197 1 0 0
chr19:3632428|3632555 hsa-miR-4271 0 1 0
chr19:3632428|3632555 hsa-miR-4443 0 1 0
chr19:3632428|3632555 hsa-miR-3689c 0 1 0
chr19:3632428|3632555 hsa-miR-4512 0 1 0
chr19:3632428|3632555 hsa-miR-3960 1 0 0
chr19:3632428|3632555 hsa-miR-4688 0 1 0
chr19:3632428|3632555 hsa-miR-4739 1 1 0
chr19:3632428|3632555 hsa-miR-6077 0 1 0
chr19:3632428|3632555 hsa-miR-378j 0 1 0
chr19:3632428|3632555 hsa-miR-8072 1 1 0
chr19:3632428|3632555 hsa-miR-8089 0 1 0
chr19:3632428|3632555 hsa-miR-12127 0 1 0
chr19:3632428|3632555 hsa-miR-6765-5p 1 0 0
chr19:3632428|3632555 hsa-miR-6861-5p 1 0 0
chr19:3632428|3632555 hsa-miR-7106-5p 0 1 0
chr19:3632428|3632555 hsa-miR-6825-5p 0 1 0
chr19:3632428|3632555 hsa-miR-6720-5p 1 0 0
chr19:3632428|3632555 hsa-miR-6799-5p 1 1 0
chr19:3632428|3632555 hsa-miR-6728-5p 1 0 0
chr19:3632428|3632555 hsa-miR-7851-3p 0 1 0
chr19:3632428|3632555 hsa-miR-3192-5p 0 1 0
chr19:3632428|3632555 hsa-miR-4709-3p 1 0 0
chr19:3632428|3632555 hsa-miR-874-5p 0 1 0
chr19:3632428|3632555 hsa-miR-6727-5p 1 0 0
chr19:3632428|3632555 hsa-miR-3151-5p 1 0 0
chr19:3632428|3632555 hsa-miR-6793-5p 1 1 0
chr19:3632428|3632555 hsa-miR-23a-5p 1 0 0
chr19:3632428|3632555 hsa-miR-30b-3p 0 1 0
chr19:3632428|3632555 hsa-miR-6789-5p 1 0 0
chr19:3632428|3632555 hsa-miR-6781-5p 1 0 0
chr19:3632428|3632555 hsa-miR-10400-5p 1 0 0
chr19:3632428|3632555 hsa-miR-3689b-3p 0 1 0
chr19:3632428|3632555 hsa-miR-4763-3p 1 0 0
chr19:3632428|3632555 hsa-miR-6769b-5p 1 1 0
chr19:3632428|3632555 hsa-miR-6787-5p 0 1 0
chr19:3632428|3632555 hsa-miR-6816-5p 1 0 0
chr19:3632428|3632555 hsa-miR-6775-5p 0 1 0
chr19:3632428|3632555 hsa-miR-6743-5p 1 1 0
chr19:3632428|3632555 hsa-miR-6756-5p 0 1 0
chr19:3632428|3632555 hsa-miR-6769a-5p 1 1 0
chr19:3632428|3632555 hsa-miR-6803-5p 1 0 0
chr19:3632428|3632555 hsa-miR-6813-5p 1 0 0
chr19:3632428|3632555 hsa-miR-6819-5p 1 0 0
chr19:3632428|3632555 hsa-miR-6851-5p 1 1 0
chr19:3632428|3632555 hsa-miR-11181-3p 0 1 0
chr19:3632428|3632555 hsa-miR-6722-3p 1 0 0
chr19:3632428|3632555 hsa-miR-7111-5p 0 1 0
chr19:3632428|3632555 hsa-miR-6780b-5p 0 1 0
chr19:3632428|3632555 hsa-miR-3689a-3p 0 1 0
chr19:3632428|3632555 hsa-miR-4726-5p 1 0 0
chr19:3632428|3632555 hsa-miR-6794-5p 1 0 0
chr19:3632428|3632555 hsa-miR-3085-5p 1 0 0
chr19:3632428|3632555 hsa-miR-3940-5p 1 0 0
chr19:3632428|3632555 hsa-miR-1914-3p 1 0 0
chr19:3632428|3632555 hsa-miR-4700-5p 0 1 0
chr19:3632428|3632555 hsa-miR-324-3p 0 1 0
chr19:3632428|3632555 hsa-miR-4747-5p 0 1 0
chr19:3632428|3632555 hsa-miR-4667-5p 0 1 0
chr19:3632428|3632555 hsa-miR-6839-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:3632428|3632555
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MFPPQWGPDAHLPGAPRAKTSGASNPDPPQLEGQASSSP
Nucleotide Sequence ATGTTCCCGCCGCAGTGGGGCCCTGACGCCCACCTCCCAGGTGCCCCTCGAGCAAAAACCTCTGGCGCCTCCAATCCAGACCCACCACAGCTGGAGGGCCAGGCCTCCTCTTCCCCA
CircID chr19:3632428|3632555
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MTPTSQVPLEQKPLAPPIQTHHSWRARPPLPQ
Nucleotide Sequence CTGACGCCCACCTCCCAGGTGCCCCTCGAGCAAAAACCTCTGGCGCCTCCAATCCAGACCCACCACAGCTGGAGGGCCAGGCCTCCTCTTCCCCAG
CircID chr19:3632428|3632555
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MEAPEVFARGAPGRWASGPHCGGNIAA
Nucleotide Sequence TTGGAGGCGCCAGAGGTTTTTGCTCGAGGGGCACCTGGGAGGTGGGCGTCAGGGCCCCACTGCGGCGGGAACATAGCTGCT
CircID chr19:3632428|3632555
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence LGKRRPGPPAVVGLDWRRQRFLLEGHLGGGRQGPTAAGT
Nucleotide Sequence CTGGGGAAGAGGAGGCCTGGCCCTCCAGCTGTGGTGGGTCTGGATTGGAGGCGCCAGAGGTTTTTGCTCGAGGGGCACCTGGGAGGTGGGCGTCAGGGCCCCACTGCGGCGGGAACATAG
CircID chr19:3632428|3632555
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MALQLWWVWIGGARGFCSRGTWEVGVRAPLRREHSC
Nucleotide Sequence CTGGCCCTCCAGCTGTGGTGGGTCTGGATTGGAGGCGCCAGAGGTTTTTGCTCGAGGGGCACCTGGGAGGTGGGCGTCAGGGCCCCACTGCGGCGGGAACATAGCTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab