CircRNA Information

General Information
circRNA Basic Information
CircID chr19:38382574|38382700
Strand +
CircType exon
Host Gene ENSG00000099341.10;
Algorism CIRI2;
Sequence TCCTGACCTCAGGCGATCCTCCCACCTCAGCCTCCCAGAGTGAGCCTAGGTGGGAGGATCCACCTTGGTGCGCGGGAGCCACTGCACCCAGCCCAATTTCACCTTCCATAGCCTGGTCCCAGCCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:38382574|38382700 hsa-miR-326 0 0 1
chr19:38382574|38382700 hsa-miR-645 0 1 1
chr19:38382574|38382700 hsa-miR-532-3p 0 1 1
chr19:38382574|38382700 hsa-miR-485-5p 0 0 1
chr19:38382574|38382700 hsa-miR-1224-3p 0 1 1
chr19:38382574|38382700 hsa-miR-330-5p 0 0 1
chr19:38382574|38382700 hsa-miR-1260 0 0 1
chr19:38382574|38382700 hsa-miR-1280 0 0 1
chr19:38382574|38382700 hsa-miR-762 1 1 0
chr19:38382574|38382700 hsa-miR-1260a 0 1 0
chr19:38382574|38382700 hsa-miR-1538 1 0 0
chr19:38382574|38382700 hsa-miR-2861 1 0 0
chr19:38382574|38382700 hsa-miR-4298 1 0 0
chr19:38382574|38382700 hsa-miR-3929 0 1 0
chr19:38382574|38382700 hsa-miR-3135b 1 0 0
chr19:38382574|38382700 hsa-miR-4478 0 1 0
chr19:38382574|38382700 hsa-miR-3689c 1 1 0
chr19:38382574|38382700 hsa-miR-4492 1 1 0
chr19:38382574|38382700 hsa-miR-4498 1 1 0
chr19:38382574|38382700 hsa-miR-4505 1 1 0
chr19:38382574|38382700 hsa-miR-4507 1 0 0
chr19:38382574|38382700 hsa-miR-4521 1 0 0
chr19:38382574|38382700 hsa-miR-1587 1 1 0
chr19:38382574|38382700 hsa-miR-4651 1 0 0
chr19:38382574|38382700 hsa-miR-4656 1 1 0
chr19:38382574|38382700 hsa-miR-4721 0 1 0
chr19:38382574|38382700 hsa-miR-4741 1 0 0
chr19:38382574|38382700 hsa-miR-5693 0 1 0
chr19:38382574|38382700 hsa-miR-5787 1 1 0
chr19:38382574|38382700 hsa-miR-6134 0 1 0
chr19:38382574|38382700 hsa-miR-7974 1 0 0
chr19:38382574|38382700 hsa-miR-8089 1 0 0
chr19:38382574|38382700 hsa-miR-6749-3p 0 1 0
chr19:38382574|38382700 hsa-miR-92a-1-5p 1 1 0
chr19:38382574|38382700 hsa-miR-6825-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6894-5p 1 0 0
chr19:38382574|38382700 hsa-miR-4687-3p 1 0 0
chr19:38382574|38382700 hsa-miR-6799-5p 1 0 0
chr19:38382574|38382700 hsa-miR-5187-5p 1 0 0
chr19:38382574|38382700 hsa-miR-1227-5p 1 0 0
chr19:38382574|38382700 hsa-miR-4786-5p 1 0 0
chr19:38382574|38382700 hsa-miR-7114-5p 1 0 0
chr19:38382574|38382700 hsa-miR-3192-5p 1 1 0
chr19:38382574|38382700 hsa-miR-6757-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6730-5p 1 0 0
chr19:38382574|38382700 hsa-miR-4755-3p 1 1 0
chr19:38382574|38382700 hsa-miR-7160-5p 0 1 0
chr19:38382574|38382700 hsa-miR-6741-5p 0 1 0
chr19:38382574|38382700 hsa-miR-6721-5p 1 0 0
chr19:38382574|38382700 hsa-miR-5589-5p 1 1 0
chr19:38382574|38382700 hsa-miR-6776-5p 0 1 0
chr19:38382574|38382700 hsa-miR-6871-5p 1 0 0
chr19:38382574|38382700 hsa-miR-1292-5p 1 0 0
chr19:38382574|38382700 hsa-miR-3190-3p 1 0 0
chr19:38382574|38382700 hsa-miR-6782-5p 1 0 0
chr19:38382574|38382700 hsa-miR-30b-3p 0 1 0
chr19:38382574|38382700 hsa-miR-5088-5p 1 0 0
chr19:38382574|38382700 hsa-miR-3944-3p 1 0 0
chr19:38382574|38382700 hsa-miR-4640-5p 1 0 0
chr19:38382574|38382700 hsa-miR-1908-5p 1 0 0
chr19:38382574|38382700 hsa-miR-296-3p 1 1 0
chr19:38382574|38382700 hsa-miR-92b-5p 1 0 0
chr19:38382574|38382700 hsa-miR-4446-3p 1 1 0
chr19:38382574|38382700 hsa-miR-6824-5p 1 0 0
chr19:38382574|38382700 hsa-miR-4776-5p 1 0 0
chr19:38382574|38382700 hsa-miR-7162-3p 0 1 0
chr19:38382574|38382700 hsa-miR-664b-5p 1 0 0
chr19:38382574|38382700 hsa-miR-493-3p 1 0 0
chr19:38382574|38382700 hsa-miR-514a-5p 0 1 0
chr19:38382574|38382700 hsa-miR-6503-3p 1 0 0
chr19:38382574|38382700 hsa-miR-1207-5p 1 0 0
chr19:38382574|38382700 hsa-miR-1273h-5p 1 1 0
chr19:38382574|38382700 hsa-miR-3689b-3p 1 1 0
chr19:38382574|38382700 hsa-miR-6769b-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6778-5p 0 1 0
chr19:38382574|38382700 hsa-miR-5001-5p 1 1 0
chr19:38382574|38382700 hsa-miR-6756-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6851-5p 1 0 0
chr19:38382574|38382700 hsa-miR-1249-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6779-5p 1 1 0
chr19:38382574|38382700 hsa-miR-6780a-5p 1 1 0
chr19:38382574|38382700 hsa-miR-6879-5p 1 0 0
chr19:38382574|38382700 hsa-miR-3620-5p 1 1 0
chr19:38382574|38382700 hsa-miR-4728-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6780b-5p 1 0 0
chr19:38382574|38382700 hsa-miR-1909-3p 1 0 0
chr19:38382574|38382700 hsa-miR-3689a-3p 0 1 0
chr19:38382574|38382700 hsa-miR-4649-5p 1 0 0
chr19:38382574|38382700 hsa-miR-4726-5p 1 0 0
chr19:38382574|38382700 hsa-miR-4749-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6846-5p 0 1 0
chr19:38382574|38382700 hsa-miR-6848-5p 0 1 0
chr19:38382574|38382700 hsa-miR-6883-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6845-5p 1 0 0
chr19:38382574|38382700 hsa-miR-3940-5p 1 0 0
chr19:38382574|38382700 hsa-miR-4646-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6891-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6762-5p 1 0 0
chr19:38382574|38382700 hsa-miR-6884-5p 0 1 0
chr19:38382574|38382700 hsa-miR-619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:38382574|38382700
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence LTSGDPPTSASQSEPRWEDPPWCAGATAPSPISPSIAWSQP
Nucleotide Sequence CTGACCTCAGGCGATCCTCCCACCTCAGCCTCCCAGAGTGAGCCTAGGTGGGAGGATCCACCTTGGTGCGCGGGAGCCACTGCACCCAGCCCAATTTCACCTTCCATAGCCTGGTCCCAGCCC
CircID chr19:38382574|38382700
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MEGEIGLGAVAPAHQGGSSHLGSLWEAEVGGSPEVR
Nucleotide Sequence ATGGAAGGTGAAATTGGGCTGGGTGCAGTGGCTCCCGCGCACCAAGGTGGATCCTCCCACCTAGGCTCACTCTGGGAGGCTGAGGTGGGAGGATCGCCTGAGGTCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab