CircRNA Information

General Information
circRNA Basic Information
CircID chr19:38729116|38729395
Strand -
CircType exon
Host Gene ENSG00000130402.10;
Algorism CIRI2;
Sequence CAGGTCATCGCTTCCTTCAAGGTCTTAGCAGGGGACAAGGTGAGCGAGACCCCTACGAGGTGCATGGGGGCTGGCGAGAGGGGTCCCTGCAGTGGGAGGGGCTGAGGGGGCCAGTGTGTGGGTGGGGATGGCTCAGAGTCCCATCCTGCCTGCCCCAGAACTTCATCACAGCTGAGGAGCTGCGGAGAGAGCTGCCCCCCGACCAGGCCGAGTACTGCATCGCCCGCATGGCGCCATACCAGGGCCCTGACGCCGTGCCCGGTGCCCTCGACTACAAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:38729116|38729395 hsa-miR-193b-5p 0 0 1
chr19:38729116|38729395 hsa-miR-193b-3p 0 0 1
chr19:38729116|38729395 hsa-miR-564 1 1 1
chr19:38729116|38729395 hsa-miR-603 0 0 1
chr19:38729116|38729395 hsa-miR-631 0 0 1
chr19:38729116|38729395 hsa-miR-637 1 0 1
chr19:38729116|38729395 hsa-miR-652-5p 0 0 1
chr19:38729116|38729395 hsa-miR-652-3p 0 0 1
chr19:38729116|38729395 hsa-miR-940 1 0 1
chr19:38729116|38729395 hsa-miR-1234-3p 0 0 1
chr19:38729116|38729395 hsa-miR-1205 0 1 1
chr19:38729116|38729395 hsa-miR-1291 0 0 1
chr19:38729116|38729395 hsa-miR-1252-5p 0 0 1
chr19:38729116|38729395 hsa-miR-1252-3p 0 0 1
chr19:38729116|38729395 hsa-miR-1234 0 0 1
chr19:38729116|38729395 hsa-miR-486-3p 0 1 1
chr19:38729116|38729395 hsa-miR-532-3p 0 0 1
chr19:38729116|38729395 hsa-miR-566 0 0 1
chr19:38729116|38729395 hsa-miR-1207-3p 0 0 1
chr19:38729116|38729395 hsa-miR-331-3p 0 0 1
chr19:38729116|38729395 hsa-miR-502-3p 0 1 1
chr19:38729116|38729395 hsa-miR-501-3p 0 0 1
chr19:38729116|38729395 hsa-miR-509-3-5p 0 0 1
chr19:38729116|38729395 hsa-miR-509-5p 0 0 1
chr19:38729116|38729395 hsa-miR-193a-3p 0 1 1
chr19:38729116|38729395 hsa-miR-720 0 0 1
chr19:38729116|38729395 hsa-miR-326 0 1 0
chr19:38729116|38729395 hsa-miR-346 1 0 0
chr19:38729116|38729395 hsa-miR-612 0 1 0
chr19:38729116|38729395 hsa-miR-1202 1 0 0
chr19:38729116|38729395 hsa-miR-2861 1 0 0
chr19:38729116|38729395 hsa-miR-3170 0 1 0
chr19:38729116|38729395 hsa-miR-3196 1 0 0
chr19:38729116|38729395 hsa-miR-4313 0 1 0
chr19:38729116|38729395 hsa-miR-4268 0 1 0
chr19:38729116|38729395 hsa-miR-3943 0 1 0
chr19:38729116|38729395 hsa-miR-4418 0 1 0
chr19:38729116|38729395 hsa-miR-2392 0 1 0
chr19:38729116|38729395 hsa-miR-4514 0 1 0
chr19:38729116|38729395 hsa-miR-3972 1 0 0
chr19:38729116|38729395 hsa-miR-4688 1 0 0
chr19:38729116|38729395 hsa-miR-4692 0 1 0
chr19:38729116|38729395 hsa-miR-4721 1 0 0
chr19:38729116|38729395 hsa-miR-4739 1 0 0
chr19:38729116|38729395 hsa-miR-4767 1 0 0
chr19:38729116|38729395 hsa-miR-5193 0 1 0
chr19:38729116|38729395 hsa-miR-6081 1 0 0
chr19:38729116|38729395 hsa-miR-6860 1 0 0
chr19:38729116|38729395 hsa-miR-7974 1 0 0
chr19:38729116|38729395 hsa-miR-8074 0 1 0
chr19:38729116|38729395 hsa-miR-8089 1 0 0
chr19:38729116|38729395 hsa-miR-4665-3p 1 0 0
chr19:38729116|38729395 hsa-miR-6894-5p 1 0 0
chr19:38729116|38729395 hsa-miR-6720-5p 1 0 0
chr19:38729116|38729395 hsa-miR-766-3p 1 0 0
chr19:38729116|38729395 hsa-miR-6892-3p 1 1 0
chr19:38729116|38729395 hsa-miR-1225-3p 1 0 0
chr19:38729116|38729395 hsa-miR-6727-5p 1 0 0
chr19:38729116|38729395 hsa-miR-4655-5p 1 0 0
chr19:38729116|38729395 hsa-miR-6849-3p 0 1 0
chr19:38729116|38729395 hsa-miR-7110-3p 0 1 0
chr19:38729116|38729395 hsa-miR-6787-3p 0 1 0
chr19:38729116|38729395 hsa-miR-4655-3p 1 0 0
chr19:38729116|38729395 hsa-miR-3156-5p 0 1 0
chr19:38729116|38729395 hsa-miR-3194-5p 1 1 0
chr19:38729116|38729395 hsa-miR-6850-5p 1 0 0
chr19:38729116|38729395 hsa-miR-6735-3p 1 0 0
chr19:38729116|38729395 hsa-miR-6858-3p 1 1 0
chr19:38729116|38729395 hsa-miR-1226-5p 1 0 0
chr19:38729116|38729395 hsa-miR-4763-5p 1 0 0
chr19:38729116|38729395 hsa-miR-6763-3p 1 0 0
chr19:38729116|38729395 hsa-miR-4707-3p 1 0 0
chr19:38729116|38729395 hsa-miR-3944-3p 1 0 0
chr19:38729116|38729395 hsa-miR-4783-3p 1 0 0
chr19:38729116|38729395 hsa-miR-6894-3p 1 0 0
chr19:38729116|38729395 hsa-miR-6757-3p 0 1 0
chr19:38729116|38729395 hsa-miR-3127-5p 0 1 0
chr19:38729116|38729395 hsa-miR-3677-3p 1 1 0
chr19:38729116|38729395 hsa-miR-4743-5p 1 0 0
chr19:38729116|38729395 hsa-miR-4787-5p 1 0 0
chr19:38729116|38729395 hsa-miR-3616-3p 0 1 0
chr19:38729116|38729395 hsa-miR-6736-3p 0 1 0
chr19:38729116|38729395 hsa-miR-6769a-3p 0 1 0
chr19:38729116|38729395 hsa-miR-3190-5p 1 0 0
chr19:38729116|38729395 hsa-miR-7160-3p 0 1 0
chr19:38729116|38729395 hsa-miR-1226-3p 1 0 0
chr19:38729116|38729395 hsa-miR-4758-3p 1 0 0
chr19:38729116|38729395 hsa-miR-4749-3p 1 1 0
chr19:38729116|38729395 hsa-miR-328-3p 1 1 0
chr19:38729116|38729395 hsa-miR-6795-3p 0 1 0
chr19:38729116|38729395 hsa-miR-6777-3p 1 0 0
chr19:38729116|38729395 hsa-miR-3177-3p 0 1 0
chr19:38729116|38729395 hsa-miR-4750-3p 1 0 0
chr19:38729116|38729395 hsa-miR-6846-3p 0 1 0
chr19:38729116|38729395 hsa-miR-6729-3p 1 1 0
chr19:38729116|38729395 hsa-miR-3156-3p 0 1 0
chr19:38729116|38729395 hsa-miR-6816-5p 1 0 0
chr19:38729116|38729395 hsa-miR-6775-5p 0 1 0
chr19:38729116|38729395 hsa-miR-6743-5p 1 0 0
chr19:38729116|38729395 hsa-miR-7107-5p 1 1 0
chr19:38729116|38729395 hsa-miR-6808-5p 0 1 0
chr19:38729116|38729395 hsa-miR-6879-5p 0 1 0
chr19:38729116|38729395 hsa-miR-3620-5p 1 0 0
chr19:38729116|38729395 hsa-miR-6836-5p 1 0 0
chr19:38729116|38729395 hsa-miR-328-5p 1 1 0
chr19:38729116|38729395 hsa-miR-4632-5p 1 0 0
chr19:38729116|38729395 hsa-miR-4685-5p 0 1 0
chr19:38729116|38729395 hsa-miR-6735-5p 1 1 0
chr19:38729116|38729395 hsa-miR-6885-5p 1 0 0
chr19:38729116|38729395 hsa-miR-6511b-5p 0 1 0
chr19:38729116|38729395 hsa-miR-4722-3p 1 0 0
chr19:38729116|38729395 hsa-miR-6784-3p 0 1 0
chr19:38729116|38729395 hsa-miR-6862-3p 1 1 0
chr19:38729116|38729395 hsa-miR-6810-3p 0 1 0
chr19:38729116|38729395 hsa-miR-10392-3p 1 0 0
chr19:38729116|38729395 hsa-miR-4723-3p 0 1 0
chr19:38729116|38729395 hsa-miR-6751-3p 0 1 0
chr19:38729116|38729395 hsa-miR-6833-3p 0 1 0
chr19:38729116|38729395 hsa-miR-4653-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:38729116|38729395
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MRSCGESCPPTRPSTASPAWRHTRALTPCPVPSTTS
Nucleotide Sequence CTGAGGAGCTGCGGAGAGAGCTGCCCCCCGACCAGGCCGAGTACTGCATCGCCCGCATGGCGCCATACCAGGGCCCTGACGCCGTGCCCGGTGCCCTCGACTACAAGT
CircID chr19:38729116|38729395
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MARGVPAVGGAEGASVWVGMAQSPILPAPELHHS
Nucleotide Sequence CTGGCGAGAGGGGTCCCTGCAGTGGGAGGGGCTGAGGGGGCCAGTGTGTGGGTGGGGATGGCTCAGAGTCCCATCCTGCCTGCCCCAGAACTTCATCACAGCTGA
CircID chr19:38729116|38729395
ORF Type ORF3
Protein Length 64
Nucleotide Length 192
Protein Sequence MQWEGLRGPVCGWGWLRVPSCLPQNFITAEELRRELPPDQAEYCIARMAPYQGPDAVPGALDYK
Nucleotide Sequence CTGCAGTGGGAGGGGCTGAGGGGGCCAGTGTGTGGGTGGGGATGGCTCAGAGTCCCATCCTGCCTGCCCCAGAACTTCATCACAGCTGAGGAGCTGCGGAGAGAGCTGCCCCCCGACCAGGCCGAGTACTGCATCGCCCGCATGGCGCCATACCAGGGCCCTGACGCCGTGCCCGGTGCCCTCGACTACAAG
CircID chr19:38729116|38729395
ORF Type ORF4
Protein Length 58
Nucleotide Length 177
Protein Sequence MRAMQYSAWSGGSSLRSSSAVMKFWGRQDGTLSHPHPHTGPLSPSHCRDPSRQPPCTS
Nucleotide Sequence ATGCGGGCGATGCAGTACTCGGCCTGGTCGGGGGGCAGCTCTCTCCGCAGCTCCTCAGCTGTGATGAAGTTCTGGGGCAGGCAGGATGGGACTCTGAGCCATCCCCACCCACACACTGGCCCCCTCAGCCCCTCCCACTGCAGGGACCCCTCTCGCCAGCCCCCATGCACCTCGTAG
CircID chr19:38729116|38729395
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MAPSAPPTAGTPLASPHAPRRGLAHLVPC
Nucleotide Sequence CTGGCCCCCTCAGCCCCTCCCACTGCAGGGACCCCTCTCGCCAGCCCCCATGCACCTCGTAGGGGTCTCGCTCACCTTGTCCCCTGCTAA
CircID chr19:38729116|38729395
ORF Type ORF6
Protein Length 80
Nucleotide Length 240
Protein Sequence MVWRHAGDAVLGLVGGQLSPQLLSCDEVLGQAGWDSEPSPPTHWPPQPLPLQGPLSPAPMHLVGVSLTLSPAKTLKEAMT
Nucleotide Sequence CTGGTATGGCGCCATGCGGGCGATGCAGTACTCGGCCTGGTCGGGGGGCAGCTCTCTCCGCAGCTCCTCAGCTGTGATGAAGTTCTGGGGCAGGCAGGATGGGACTCTGAGCCATCCCCACCCACACACTGGCCCCCTCAGCCCCTCCCACTGCAGGGACCCCTCTCGCCAGCCCCCATGCACCTCGTAGGGGTCTCGCTCACCTTGTCCCCTGCTAAGACCTTGAAGGAAGCGATGACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab