CircRNA Information

General Information
circRNA Basic Information
CircID chr19:38729564|38729731
Strand +
CircType exon
Host Gene ENSG00000130402.10;
Algorism CIRI2;
Sequence CGGTTGTGCTGTGGGAATCCACTGGCCCCTCCTTGGTTAAAAAAGCACAACACATCATACATATTTACCAGACCAGAAGCGCTGGCCCCAAGTCTCCCCAACCTGGTCGGGGGAACCTCCTGGCCAACCCACAAAGAGAGAGAGGAGAGAGCCTGCCCCAGCCCCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:38729564|38729731 hsa-miR-484 0 0 1
chr19:38729564|38729731 hsa-miR-588 0 0 1
chr19:38729564|38729731 hsa-miR-636 0 0 1
chr19:38729564|38729731 hsa-miR-665 0 0 1
chr19:38729564|38729731 hsa-miR-939-5p 0 0 1
chr19:38729564|38729731 hsa-miR-939-3p 0 0 1
chr19:38729564|38729731 hsa-miR-1272 0 0 1
chr19:38729564|38729731 hsa-miR-1322 0 0 1
chr19:38729564|38729731 hsa-miR-486-3p 0 0 1
chr19:38729564|38729731 hsa-miR-423-5p 0 0 1
chr19:38729564|38729731 hsa-miR-188-3p 0 0 1
chr19:38729564|38729731 hsa-miR-1260 0 0 1
chr19:38729564|38729731 hsa-miR-218 0 0 1
chr19:38729564|38729731 hsa-miR-657 1 0 0
chr19:38729564|38729731 hsa-miR-762 1 0 0
chr19:38729564|38729731 hsa-miR-297 1 0 0
chr19:38729564|38729731 hsa-miR-2110 1 0 0
chr19:38729564|38729731 hsa-miR-2861 1 0 0
chr19:38729564|38729731 hsa-miR-3183 1 0 0
chr19:38729564|38729731 hsa-miR-3196 1 0 0
chr19:38729564|38729731 hsa-miR-4488 1 0 0
chr19:38729564|38729731 hsa-miR-4489 1 0 0
chr19:38729564|38729731 hsa-miR-4507 1 0 0
chr19:38729564|38729731 hsa-miR-4508 1 0 0
chr19:38729564|38729731 hsa-miR-1587 1 0 0
chr19:38729564|38729731 hsa-miR-4656 1 0 0
chr19:38729564|38729731 hsa-miR-4689 1 0 0
chr19:38729564|38729731 hsa-miR-4739 1 0 0
chr19:38729564|38729731 hsa-miR-4767 1 0 0
chr19:38729564|38729731 hsa-miR-5572 1 0 0
chr19:38729564|38729731 hsa-miR-5787 1 0 0
chr19:38729564|38729731 hsa-miR-6085 1 0 0
chr19:38729564|38729731 hsa-miR-12126 1 0 0
chr19:38729564|38729731 hsa-miR-128-1-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6765-5p 1 0 0
chr19:38729564|38729731 hsa-miR-3150a-3p 1 0 0
chr19:38729564|38729731 hsa-miR-6825-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6857-5p 1 0 0
chr19:38729564|38729731 hsa-miR-1227-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6089 1 0 0
chr19:38729564|38729731 hsa-miR-6727-5p 1 0 0
chr19:38729564|38729731 hsa-miR-3663-5p 1 0 0
chr19:38729564|38729731 hsa-miR-3180-3p 1 0 0
chr19:38729564|38729731 hsa-miR-6793-5p 1 0 0
chr19:38729564|38729731 hsa-miR-185-3p 1 0 0
chr19:38729564|38729731 hsa-miR-6732-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6810-5p 1 0 0
chr19:38729564|38729731 hsa-miR-4640-5p 1 0 0
chr19:38729564|38729731 hsa-miR-3127-5p 1 0 0
chr19:38729564|38729731 hsa-miR-296-3p 1 0 0
chr19:38729564|38729731 hsa-miR-7111-3p 1 0 0
chr19:38729564|38729731 hsa-miR-6824-5p 1 0 0
chr19:38729564|38729731 hsa-miR-4707-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6741-3p 1 0 0
chr19:38729564|38729731 hsa-miR-1207-5p 1 0 0
chr19:38729564|38729731 hsa-miR-4763-3p 1 0 0
chr19:38729564|38729731 hsa-miR-6787-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6812-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6816-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6870-5p 1 0 0
chr19:38729564|38729731 hsa-miR-1343-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6743-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6756-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6813-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6851-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6763-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6779-5p 1 0 0
chr19:38729564|38729731 hsa-miR-3620-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6780b-5p 1 0 0
chr19:38729564|38729731 hsa-miR-1909-3p 1 0 0
chr19:38729564|38729731 hsa-miR-328-5p 1 0 0
chr19:38729564|38729731 hsa-miR-4726-5p 1 0 0
chr19:38729564|38729731 hsa-miR-4749-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6794-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6795-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6848-5p 1 0 0
chr19:38729564|38729731 hsa-miR-6845-5p 1 0 0
chr19:38729564|38729731 hsa-miR-3940-5p 1 0 0
chr19:38729564|38729731 hsa-miR-4665-5p 1 0 0
chr19:38729564|38729731 hsa-miR-10398-5p 1 0 0
chr19:38729564|38729731 hsa-miR-520d-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:38729564|38729731
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MCCGNPLAPPWLKKHNTSYIFTRPEALAPSLPNLVGGTSWPTHKEREERACPSPS
Nucleotide Sequence TTGTGCTGTGGGAATCCACTGGCCCCTCCTTGGTTAAAAAAGCACAACACATCATACATATTTACCAGACCAGAAGCGCTGGCCCCAAGTCTCCCCAACCTGGTCGGGGGAACCTCCTGGCCAACCCACAAAGAGAGAGAGGAGAGAGCCTGCCCCAGCCCCTCC
CircID chr19:38729564|38729731
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MWESTGPSLVKKAQHIIHIYQTRSAGPKSPQPGRGNLLANPQRERGESLPQPL
Nucleotide Sequence CTGTGGGAATCCACTGGCCCCTCCTTGGTTAAAAAAGCACAACACATCATACATATTTACCAGACCAGAAGCGCTGGCCCCAAGTCTCCCCAACCTGGTCGGGGGAACCTCCTGGCCAACCCACAAAGAGAGAGAGGAGAGAGCCTGCCCCAGCCCCTC
CircID chr19:38729564|38729731
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MGQALSSLSLWVGQEVPPTRLGRLGASASGLVNMYDVLCFFNQGGASGFPQHN
Nucleotide Sequence CTGGGGCAGGCTCTCTCCTCTCTCTCTTTGTGGGTTGGCCAGGAGGTTCCCCCGACCAGGTTGGGGAGACTTGGGGCCAGCGCTTCTGGTCTGGTAAATATGTATGATGTGTTGTGCTTTTTTAACCAAGGAGGGGCCAGTGGATTCCCACAGCACAAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab