CircRNA Information

General Information
circRNA Basic Information
CircID chr19:38729568|38729768
Strand +
CircType exon
Host Gene ENSG00000130402.10;
Algorism CIRI2;
Sequence CTGGGTGTGGTGAGGCATCCCAGGGCATGGAAGGGACCGGTTGTGCTGTGGGAATCCACTGGCCCCTCCTTGGTTAAAAAAGCACAACACATCATACATATTTACCAGACCAGAAGCGCTGGCCCCAAGTCTCCCCAACCTGGTCGGGGGAACCTCCTGGCCAACCCACAAAGAGAGAGAGGAGAGAGCCTGCCCCAGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:38729568|38729768 hsa-miR-197-5p 0 0 1
chr19:38729568|38729768 hsa-miR-197-3p 0 0 1
chr19:38729568|38729768 hsa-miR-484 1 1 1
chr19:38729568|38729768 hsa-miR-588 0 0 1
chr19:38729568|38729768 hsa-miR-636 0 0 1
chr19:38729568|38729768 hsa-miR-874-5p 0 0 1
chr19:38729568|38729768 hsa-miR-874-3p 0 0 1
chr19:38729568|38729768 hsa-miR-665 0 0 1
chr19:38729568|38729768 hsa-miR-939-5p 0 0 1
chr19:38729568|38729768 hsa-miR-939-3p 0 0 1
chr19:38729568|38729768 hsa-miR-1272 0 0 1
chr19:38729568|38729768 hsa-miR-1322 0 0 1
chr19:38729568|38729768 hsa-miR-486-3p 0 0 1
chr19:38729568|38729768 hsa-miR-146b-3p 0 0 1
chr19:38729568|38729768 hsa-miR-423-5p 0 0 1
chr19:38729568|38729768 hsa-miR-188-3p 0 0 1
chr19:38729568|38729768 hsa-miR-220b 0 0 1
chr19:38729568|38729768 hsa-miR-1260 0 0 1
chr19:38729568|38729768 hsa-miR-218 0 0 1
chr19:38729568|38729768 hsa-miR-657 1 1 0
chr19:38729568|38729768 hsa-miR-762 1 1 0
chr19:38729568|38729768 hsa-miR-2110 1 0 0
chr19:38729568|38729768 hsa-miR-3183 1 0 0
chr19:38729568|38729768 hsa-miR-3196 1 0 0
chr19:38729568|38729768 hsa-miR-3924 0 1 0
chr19:38729568|38729768 hsa-miR-4488 1 0 0
chr19:38729568|38729768 hsa-miR-4489 1 1 0
chr19:38729568|38729768 hsa-miR-4507 0 1 0
chr19:38729568|38729768 hsa-miR-4689 1 0 0
chr19:38729568|38729768 hsa-miR-4739 1 0 0
chr19:38729568|38729768 hsa-miR-4767 1 0 0
chr19:38729568|38729768 hsa-miR-4779 0 1 0
chr19:38729568|38729768 hsa-miR-5572 1 0 0
chr19:38729568|38729768 hsa-miR-5787 1 1 0
chr19:38729568|38729768 hsa-miR-12118 0 1 0
chr19:38729568|38729768 hsa-miR-12126 1 1 0
chr19:38729568|38729768 hsa-miR-128-3p 0 1 0
chr19:38729568|38729768 hsa-miR-4435 0 1 0
chr19:38729568|38729768 hsa-miR-128-1-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6765-5p 1 0 0
chr19:38729568|38729768 hsa-miR-3150a-3p 1 1 0
chr19:38729568|38729768 hsa-miR-6825-5p 1 1 0
chr19:38729568|38729768 hsa-miR-6857-5p 1 0 0
chr19:38729568|38729768 hsa-miR-1227-5p 1 1 0
chr19:38729568|38729768 hsa-miR-6089 1 0 0
chr19:38729568|38729768 hsa-miR-6727-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6759-5p 0 1 0
chr19:38729568|38729768 hsa-miR-218-5p 0 1 0
chr19:38729568|38729768 hsa-miR-6873-3p 0 1 0
chr19:38729568|38729768 hsa-miR-7110-3p 0 1 0
chr19:38729568|38729768 hsa-miR-6845-3p 0 1 0
chr19:38729568|38729768 hsa-miR-3663-5p 1 0 0
chr19:38729568|38729768 hsa-miR-3180-3p 1 0 0
chr19:38729568|38729768 hsa-miR-6793-5p 1 0 0
chr19:38729568|38729768 hsa-miR-185-3p 1 0 0
chr19:38729568|38729768 hsa-miR-6810-5p 1 0 0
chr19:38729568|38729768 hsa-miR-4640-5p 1 1 0
chr19:38729568|38729768 hsa-miR-296-3p 0 1 0
chr19:38729568|38729768 hsa-miR-7111-3p 1 0 0
chr19:38729568|38729768 hsa-miR-6824-5p 1 0 0
chr19:38729568|38729768 hsa-miR-7152-3p 1 0 0
chr19:38729568|38729768 hsa-miR-4707-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6741-3p 1 1 0
chr19:38729568|38729768 hsa-miR-5088-3p 1 0 0
chr19:38729568|38729768 hsa-miR-1207-5p 1 0 0
chr19:38729568|38729768 hsa-miR-4763-3p 1 0 0
chr19:38729568|38729768 hsa-miR-6787-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6812-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6816-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6870-5p 1 0 0
chr19:38729568|38729768 hsa-miR-1343-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6743-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6756-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6813-5p 0 1 0
chr19:38729568|38729768 hsa-miR-6851-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6763-5p 1 1 0
chr19:38729568|38729768 hsa-miR-6779-5p 1 0 0
chr19:38729568|38729768 hsa-miR-4685-3p 1 1 0
chr19:38729568|38729768 hsa-miR-6780b-5p 1 0 0
chr19:38729568|38729768 hsa-miR-1909-3p 1 0 0
chr19:38729568|38729768 hsa-miR-4726-5p 1 1 0
chr19:38729568|38729768 hsa-miR-4749-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6794-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6795-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6889-5p 0 1 0
chr19:38729568|38729768 hsa-miR-6845-5p 1 1 0
chr19:38729568|38729768 hsa-miR-365a-5p 1 0 0
chr19:38729568|38729768 hsa-miR-3940-5p 0 1 0
chr19:38729568|38729768 hsa-miR-4665-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6891-5p 0 1 0
chr19:38729568|38729768 hsa-miR-10398-5p 1 0 0
chr19:38729568|38729768 hsa-miR-6762-5p 0 1 0
chr19:38729568|38729768 hsa-miR-6756-3p 1 0 0
chr19:38729568|38729768 hsa-miR-6511b-3p 0 1 0
chr19:38729568|38729768 hsa-miR-6506-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:38729568|38729768
ORF Type ORF1
Protein Length 67
Nucleotide Length 201
Protein Sequence LGVVRHPRAWKGPVVLWESTGPSLVKKAQHIIHIYQTRSAGPKSPQPGRGNLLANPQRERGESLPQP
Nucleotide Sequence CTGGGTGTGGTGAGGCATCCCAGGGCATGGAAGGGACCGGTTGTGCTGTGGGAATCCACTGGCCCCTCCTTGGTTAAAAAAGCACAACACATCATACATATTTACCAGACCAGAAGCGCTGGCCCCAAGTCTCCCCAACCTGGTCGGGGGAACCTCCTGGCCAACCCACAAAGAGAGAGAGGAGAGAGCCTGCCCCAGCCC
CircID chr19:38729568|38729768
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MCCGNPLAPPWLKKHNTSYIFTRPEALAPSLPNLVGGTSWPTHKEREERACPS
Nucleotide Sequence TTGTGCTGTGGGAATCCACTGGCCCCTCCTTGGTTAAAAAAGCACAACACATCATACATATTTACCAGACCAGAAGCGCTGGCCCCAAGTCTCCCCAACCTGGTCGGGGGAACCTCCTGGCCAACCCACAAAGAGAGAGAGGAGAGAGCCTGCCCCAGC
CircID chr19:38729568|38729768
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MGQALSSLSLWVGQEVPPTRLGRLGASASGLVNMYDVLCFFNQGGASGFPQHNRSLPCPGMPHHTQ
Nucleotide Sequence CTGGGGCAGGCTCTCTCCTCTCTCTCTTTGTGGGTTGGCCAGGAGGTTCCCCCGACCAGGTTGGGGAGACTTGGGGCCAGCGCTTCTGGTCTGGTAAATATGTATGATGTGTTGTGCTTTTTTAACCAAGGAGGGGCCAGTGGATTCCCACAGCACAACCGGTCCCTTCCATGCCCTGGGATGCCTCACCACACCCAG
CircID chr19:38729568|38729768
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MMCCAFLTKEGPVDSHSTTGPFHALGCLTTP
Nucleotide Sequence ATGATGTGTTGTGCTTTTTTAACCAAGGAGGGGCCAGTGGATTCCCACAGCACAACCGGTCCCTTCCATGCCCTGGGATGCCTCACCACACCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab