CircRNA Information

General Information
circRNA Basic Information
CircID chr19:38729641|38729894
Strand -
CircType exon
Host Gene ENSG00000130402.10;
Algorism CIRI2;
Sequence TTGGGGCCAGCGCTTCTGGTCTGGTAAATATGTATGATGTGTTGTGCTTTTTTAACCAAGGAGGGGCCAGTGGATTCCCACAGCACAACCGGTCCCTTCCATGCCCTGGGATGCCTCACCACACCCAGGTCTCTTCCTTTGCTCTGAGGTCCCTTCAAGGCCTCCCCAATCCAGGCCAAAGCCCCATGTGCCTTGTCCAGGAACTGCCTGGGCCATGCGAGGGGCCAGCAGAGGGCGCCACCACCACCTGACGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:38729641|38729894 hsa-miR-487a-5p 0 0 1
chr19:38729641|38729894 hsa-miR-487a-3p 0 0 1
chr19:38729641|38729894 hsa-miR-193b-5p 0 0 1
chr19:38729641|38729894 hsa-miR-193b-3p 0 0 1
chr19:38729641|38729894 hsa-miR-518e-5p 0 0 1
chr19:38729641|38729894 hsa-miR-518e-3p 0 0 1
chr19:38729641|38729894 hsa-miR-506-5p 0 0 1
chr19:38729641|38729894 hsa-miR-506-3p 0 0 1
chr19:38729641|38729894 hsa-miR-609 0 0 1
chr19:38729641|38729894 hsa-miR-631 0 0 1
chr19:38729641|38729894 hsa-miR-939-5p 0 0 1
chr19:38729641|38729894 hsa-miR-939-3p 0 0 1
chr19:38729641|38729894 hsa-miR-1827 0 0 1
chr19:38729641|38729894 hsa-miR-125a-3p 0 0 1
chr19:38729641|38729894 hsa-miR-769-5p 0 1 1
chr19:38729641|38729894 hsa-miR-324-5p 0 1 1
chr19:38729641|38729894 hsa-miR-566 0 0 1
chr19:38729641|38729894 hsa-miR-876-3p 0 0 1
chr19:38729641|38729894 hsa-miR-485-3p 0 0 1
chr19:38729641|38729894 hsa-miR-193a-3p 0 0 1
chr19:38729641|38729894 hsa-miR-323-5p 0 0 1
chr19:38729641|38729894 hsa-miR-124 0 0 1
chr19:38729641|38729894 hsa-miR-218 0 0 1
chr19:38729641|38729894 hsa-miR-1254 0 0 1
chr19:38729641|38729894 hsa-miR-608 1 0 0
chr19:38729641|38729894 hsa-miR-612 1 0 0
chr19:38729641|38729894 hsa-miR-638 1 0 0
chr19:38729641|38729894 hsa-miR-663a 1 0 0
chr19:38729641|38729894 hsa-miR-762 1 0 0
chr19:38729641|38729894 hsa-miR-892b 0 1 0
chr19:38729641|38729894 hsa-miR-663b 0 1 0
chr19:38729641|38729894 hsa-miR-1268a 1 0 0
chr19:38729641|38729894 hsa-miR-1538 0 1 0
chr19:38729641|38729894 hsa-miR-2861 1 0 0
chr19:38729641|38729894 hsa-miR-3188 1 0 0
chr19:38729641|38729894 hsa-miR-3196 1 0 0
chr19:38729641|38729894 hsa-miR-3649 0 1 0
chr19:38729641|38729894 hsa-miR-3945 1 0 0
chr19:38729641|38729894 hsa-miR-1268b 1 0 0
chr19:38729641|38729894 hsa-miR-1587 1 0 0
chr19:38729641|38729894 hsa-miR-4673 0 1 0
chr19:38729641|38729894 hsa-miR-4689 1 0 0
chr19:38729641|38729894 hsa-miR-4692 0 1 0
chr19:38729641|38729894 hsa-miR-6075 1 0 0
chr19:38729641|38729894 hsa-miR-378j 0 1 0
chr19:38729641|38729894 hsa-miR-6860 1 1 0
chr19:38729641|38729894 hsa-miR-7706 0 1 0
chr19:38729641|38729894 hsa-miR-8085 1 0 0
chr19:38729641|38729894 hsa-miR-3194-3p 0 1 0
chr19:38729641|38729894 hsa-miR-323a-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6765-5p 1 0 0
chr19:38729641|38729894 hsa-miR-3150a-3p 0 1 0
chr19:38729641|38729894 hsa-miR-6861-5p 1 0 0
chr19:38729641|38729894 hsa-miR-7106-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6825-5p 0 1 0
chr19:38729641|38729894 hsa-miR-6857-5p 1 0 0
chr19:38729641|38729894 hsa-miR-7851-3p 0 1 0
chr19:38729641|38729894 hsa-miR-3663-3p 1 0 0
chr19:38729641|38729894 hsa-miR-6089 1 0 0
chr19:38729641|38729894 hsa-miR-6890-5p 1 0 0
chr19:38729641|38729894 hsa-miR-3928-3p 1 0 0
chr19:38729641|38729894 hsa-miR-3622b-5p 1 1 0
chr19:38729641|38729894 hsa-miR-197-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6776-5p 0 1 0
chr19:38729641|38729894 hsa-miR-7845-5p 1 0 0
chr19:38729641|38729894 hsa-miR-185-3p 1 0 0
chr19:38729641|38729894 hsa-miR-6732-5p 1 0 0
chr19:38729641|38729894 hsa-miR-2467-3p 1 0 0
chr19:38729641|38729894 hsa-miR-6728-3p 0 1 0
chr19:38729641|38729894 hsa-miR-7855-5p 0 1 0
chr19:38729641|38729894 hsa-miR-5006-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6786-5p 1 0 0
chr19:38729641|38729894 hsa-miR-1226-5p 1 0 0
chr19:38729641|38729894 hsa-miR-1229-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6753-5p 1 0 0
chr19:38729641|38729894 hsa-miR-3127-5p 1 0 0
chr19:38729641|38729894 hsa-miR-1908-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6771-5p 1 0 0
chr19:38729641|38729894 hsa-miR-4717-3p 1 1 0
chr19:38729641|38729894 hsa-miR-6834-5p 1 0 0
chr19:38729641|38729894 hsa-miR-4638-3p 0 1 0
chr19:38729641|38729894 hsa-miR-149-3p 1 0 0
chr19:38729641|38729894 hsa-miR-202-3p 1 1 0
chr19:38729641|38729894 hsa-miR-6824-5p 1 0 0
chr19:38729641|38729894 hsa-miR-450a-2-3p 0 1 0
chr19:38729641|38729894 hsa-miR-6892-5p 1 1 0
chr19:38729641|38729894 hsa-miR-6864-5p 1 1 0
chr19:38729641|38729894 hsa-miR-664b-5p 1 0 0
chr19:38729641|38729894 hsa-miR-584-3p 0 1 0
chr19:38729641|38729894 hsa-miR-2276-5p 0 1 0
chr19:38729641|38729894 hsa-miR-4750-5p 1 0 0
chr19:38729641|38729894 hsa-miR-4749-3p 0 1 0
chr19:38729641|38729894 hsa-miR-3675-5p 0 1 0
chr19:38729641|38729894 hsa-miR-6789-3p 0 1 0
chr19:38729641|38729894 hsa-miR-6509-3p 0 1 0
chr19:38729641|38729894 hsa-miR-124-3p 0 1 0
chr19:38729641|38729894 hsa-miR-1207-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6775-5p 1 1 0
chr19:38729641|38729894 hsa-miR-5001-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6737-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6743-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6756-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6803-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6819-5p 1 0 0
chr19:38729641|38729894 hsa-miR-7107-5p 1 0 0
chr19:38729641|38729894 hsa-miR-10401-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6774-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6779-5p 1 1 0
chr19:38729641|38729894 hsa-miR-6797-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6875-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6879-5p 1 0 0
chr19:38729641|38729894 hsa-miR-1915-3p 0 1 0
chr19:38729641|38729894 hsa-miR-3620-5p 1 0 0
chr19:38729641|38729894 hsa-miR-5189-5p 1 1 0
chr19:38729641|38729894 hsa-miR-6862-5p 0 1 0
chr19:38729641|38729894 hsa-miR-1909-3p 1 0 0
chr19:38729641|38729894 hsa-miR-328-5p 1 1 0
chr19:38729641|38729894 hsa-miR-449c-5p 0 1 0
chr19:38729641|38729894 hsa-miR-4649-5p 1 0 0
chr19:38729641|38729894 hsa-miR-4685-5p 1 1 0
chr19:38729641|38729894 hsa-miR-6729-5p 1 0 0
chr19:38729641|38729894 hsa-miR-6735-5p 1 0 0
chr19:38729641|38729894 hsa-miR-4723-5p 1 0 0
chr19:38729641|38729894 hsa-miR-1266-5p 0 1 0
chr19:38729641|38729894 hsa-miR-3940-5p 1 1 0
chr19:38729641|38729894 hsa-miR-1914-3p 1 0 0
chr19:38729641|38729894 hsa-miR-6837-5p 0 1 0
chr19:38729641|38729894 hsa-miR-6764-5p 0 1 0
chr19:38729641|38729894 hsa-miR-2682-5p 0 1 0
chr19:38729641|38729894 hsa-miR-6839-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:38729641|38729894
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MMCCAFLTKEGPVDSHSTTGPFHALGCLTTPRSLPLL
Nucleotide Sequence ATGATGTGTTGTGCTTTTTTAACCAAGGAGGGGCCAGTGGATTCCCACAGCACAACCGGTCCCTTCCATGCCCTGGGATGCCTCACCACACCCAGGTCTCTTCCTTTGCTCTGA
CircID chr19:38729641|38729894
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MPWDASPHPGLFLCSEVPSRPPQSRPKPHVPCPGTAWAMRGASRGRHHHLT
Nucleotide Sequence ATGCCCTGGGATGCCTCACCACACCCAGGTCTCTTCCTTTGCTCTGAGGTCCCTTCAAGGCCTCCCCAATCCAGGCCAAAGCCCCATGTGCCTTGTCCAGGAACTGCCTGGGCCATGCGAGGGGCCAGCAGAGGGCGCCACCACCACCTGACG
CircID chr19:38729641|38729894
ORF Type ORF3
Protein Length 76
Nucleotide Length 231
Protein Sequence MVNMYDVLCFFNQGGASGFPQHNRSLPCPGMPHHTQVSSFALRSLQGLPNPGQSPMCLVQELPGPCEGPAEGATTT
Nucleotide Sequence CTGGTAAATATGTATGATGTGTTGTGCTTTTTTAACCAAGGAGGGGCCAGTGGATTCCCACAGCACAACCGGTCCCTTCCATGCCCTGGGATGCCTCACCACACCCAGGTCTCTTCCTTTGCTCTGAGGTCCCTTCAAGGCCTCCCCAATCCAGGCCAAAGCCCCATGTGCCTTGTCCAGGAACTGCCTGGGCCATGCGAGGGGCCAGCAGAGGGCGCCACCACCACCTGA
CircID chr19:38729641|38729894
ORF Type ORF4
Protein Length 66
Nucleotide Length 198
Protein Sequence MDKAHGALAWIGEALKGPQSKGRDLGVVRHPRAWKGPVVLWESTGPSLVKKAQHIIHIYQTRSAGP
Nucleotide Sequence CTGGACAAGGCACATGGGGCTTTGGCCTGGATTGGGGAGGCCTTGAAGGGACCTCAGAGCAAAGGAAGAGACCTGGGTGTGGTGAGGCATCCCAGGGCATGGAAGGGACCGGTTGTGCTGTGGGAATCCACTGGCCCCTCCTTGGTTAAAAAAGCACAACACATCATACATATTTACCAGACCAGAAGCGCTGGCCCC
CircID chr19:38729641|38729894
ORF Type ORF5
Protein Length 29
Nucleotide Length 87
Protein Sequence MCCGNPLAPPWLKKHNTSYIFTRPEALAP
Nucleotide Sequence TTGTGCTGTGGGAATCCACTGGCCCCTCCTTGGTTAAAAAAGCACAACACATCATACATATTTACCAGACCAGAAGCGCTGGCCCCA
CircID chr19:38729641|38729894
ORF Type ORF6
Protein Length 59
Nucleotide Length 180
Protein Sequence MLAPRMAQAVPGQGTWGFGLDWGGLEGTSEQRKRPGCGEASQGMEGTGCAVGIHWPLLG
Nucleotide Sequence CTGCTGGCCCCTCGCATGGCCCAGGCAGTTCCTGGACAAGGCACATGGGGCTTTGGCCTGGATTGGGGAGGCCTTGAAGGGACCTCAGAGCAAAGGAAGAGACCTGGGTGTGGTGAGGCATCCCAGGGCATGGAAGGGACCGGTTGTGCTGTGGGAATCCACTGGCCCCTCCTTGGTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab