CircRNA Information

General Information
circRNA Basic Information
CircID chr19:38815911|38816306
Strand -
CircType exon
Host Gene ENSG00000104823.7;
Algorism CIRI2;
Sequence CTTGGTGCTCTGCACCGCCACGGGGCTCTTGCTGGAAATCTCGGCCGCCAGCGCTAAGGCAGCATCCAGCATGACCTCTTTGTCTGGGAACACCCGGCTGCAGTGAAAGAGATCAGGGACCGGGTGGGCTGGGAAGGGCTCTCTCCTCCAGCCTCCCGCAGATGAAGAAGTGGCCACTCACAGAGGAAGGCCCAAGACCCCAGAGAAACAGCCCAATCAGAGCAGGGGGCTGACCCCACAATAAAGAAATGAGCTCACCAAGAAAGGATGCCACTAGGAATTCTAGAGCGAGGAGACAAGGGGACCCGGAGAGGCCTCCAACCCTCCAGGCCTGGCTGCCCCCAGCACTGAGCTACCACGGCCATGGCCCTACCTGACCAGCCCACTGCCCAGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:38815911|38816306 hsa-miR-29a-5p 0 0 1
chr19:38815911|38816306 hsa-miR-29a-3p 0 0 1
chr19:38815911|38816306 hsa-miR-148a-5p 0 0 1
chr19:38815911|38816306 hsa-miR-148a-3p 0 0 1
chr19:38815911|38816306 hsa-miR-34a-5p 0 0 1
chr19:38815911|38816306 hsa-miR-34a-3p 0 0 1
chr19:38815911|38816306 hsa-miR-152-5p 0 0 1
chr19:38815911|38816306 hsa-miR-152-3p 0 0 1
chr19:38815911|38816306 hsa-miR-185-5p 0 0 1
chr19:38815911|38816306 hsa-miR-185-3p 0 0 1
chr19:38815911|38816306 hsa-miR-29c-5p 0 0 1
chr19:38815911|38816306 hsa-miR-29c-3p 0 0 1
chr19:38815911|38816306 hsa-miR-326 1 1 1
chr19:38815911|38816306 hsa-miR-148b-5p 0 0 1
chr19:38815911|38816306 hsa-miR-148b-3p 0 0 1
chr19:38815911|38816306 hsa-miR-335-5p 0 0 1
chr19:38815911|38816306 hsa-miR-335-3p 0 0 1
chr19:38815911|38816306 hsa-miR-384 0 0 1
chr19:38815911|38816306 hsa-miR-449a 0 1 1
chr19:38815911|38816306 hsa-miR-578 0 0 1
chr19:38815911|38816306 hsa-miR-583 0 0 1
chr19:38815911|38816306 hsa-miR-588 0 0 1
chr19:38815911|38816306 hsa-miR-609 0 0 1
chr19:38815911|38816306 hsa-miR-612 1 1 1
chr19:38815911|38816306 hsa-miR-635 0 0 1
chr19:38815911|38816306 hsa-miR-637 1 1 1
chr19:38815911|38816306 hsa-miR-650 0 0 1
chr19:38815911|38816306 hsa-miR-449b-5p 0 0 1
chr19:38815911|38816306 hsa-miR-449b-3p 0 0 1
chr19:38815911|38816306 hsa-miR-1296-5p 0 0 1
chr19:38815911|38816306 hsa-miR-1296-3p 0 0 1
chr19:38815911|38816306 hsa-miR-765 0 0 1
chr19:38815911|38816306 hsa-miR-1287-5p 0 0 1
chr19:38815911|38816306 hsa-miR-1287-3p 0 0 1
chr19:38815911|38816306 hsa-miR-1225-3p 0 1 1
chr19:38815911|38816306 hsa-miR-512-3p 0 0 1
chr19:38815911|38816306 hsa-miR-491-5p 0 0 1
chr19:38815911|38816306 hsa-miR-486-3p 0 1 1
chr19:38815911|38816306 hsa-miR-615-5p 0 0 1
chr19:38815911|38816306 hsa-miR-296-3p 1 1 1
chr19:38815911|38816306 hsa-miR-485-5p 0 1 1
chr19:38815911|38816306 hsa-miR-193a-5p 0 0 1
chr19:38815911|38816306 hsa-miR-1184 0 0 1
chr19:38815911|38816306 hsa-miR-501-5p 0 1 1
chr19:38815911|38816306 hsa-miR-509-3p 0 0 1
chr19:38815911|38816306 hsa-miR-338-3p 0 0 1
chr19:38815911|38816306 hsa-miR-125a-5p 0 0 1
chr19:38815911|38816306 hsa-miR-330-5p 1 1 1
chr19:38815911|38816306 hsa-miR-34c-5p 0 0 1
chr19:38815911|38816306 hsa-miR-509-3-5p 0 0 1
chr19:38815911|38816306 hsa-miR-509-5p 0 0 1
chr19:38815911|38816306 hsa-miR-1233 0 0 1
chr19:38815911|38816306 hsa-miR-125b 0 0 1
chr19:38815911|38816306 hsa-miR-1285 0 0 1
chr19:38815911|38816306 hsa-miR-1254 0 0 1
chr19:38815911|38816306 hsa-miR-129-3p 0 0 1
chr19:38815911|38816306 hsa-miR-768-5p 0 0 1
chr19:38815911|38816306 hsa-miR-29b 0 0 1
chr19:38815911|38816306 hsa-miR-762 1 1 0
chr19:38815911|38816306 hsa-miR-1182 1 0 0
chr19:38815911|38816306 hsa-miR-1268a 1 0 0
chr19:38815911|38816306 hsa-miR-1276 0 1 0
chr19:38815911|38816306 hsa-miR-2861 1 0 0
chr19:38815911|38816306 hsa-miR-3147 1 0 0
chr19:38815911|38816306 hsa-miR-3196 1 0 0
chr19:38815911|38816306 hsa-miR-4297 0 1 0
chr19:38815911|38816306 hsa-miR-4322 1 0 0
chr19:38815911|38816306 hsa-miR-4265 1 0 0
chr19:38815911|38816306 hsa-miR-4292 1 0 0
chr19:38815911|38816306 hsa-miR-3652 0 1 0
chr19:38815911|38816306 hsa-miR-3943 0 1 0
chr19:38815911|38816306 hsa-miR-1268b 1 0 0
chr19:38815911|38816306 hsa-miR-4430 0 1 0
chr19:38815911|38816306 hsa-miR-4440 1 0 0
chr19:38815911|38816306 hsa-miR-4456 0 1 0
chr19:38815911|38816306 hsa-miR-3135b 0 1 0
chr19:38815911|38816306 hsa-miR-4486 1 0 0
chr19:38815911|38816306 hsa-miR-4498 1 1 0
chr19:38815911|38816306 hsa-miR-4507 1 0 0
chr19:38815911|38816306 hsa-miR-1587 1 1 0
chr19:38815911|38816306 hsa-miR-4642 0 1 0
chr19:38815911|38816306 hsa-miR-4651 1 0 0
chr19:38815911|38816306 hsa-miR-4656 1 0 0
chr19:38815911|38816306 hsa-miR-4658 1 0 0
chr19:38815911|38816306 hsa-miR-4688 1 0 0
chr19:38815911|38816306 hsa-miR-451b 0 1 0
chr19:38815911|38816306 hsa-miR-4734 0 1 0
chr19:38815911|38816306 hsa-miR-4739 0 1 0
chr19:38815911|38816306 hsa-miR-4741 1 1 0
chr19:38815911|38816306 hsa-miR-5090 1 0 0
chr19:38815911|38816306 hsa-miR-5572 1 0 0
chr19:38815911|38816306 hsa-miR-6131 0 1 0
chr19:38815911|38816306 hsa-miR-6860 1 1 0
chr19:38815911|38816306 hsa-miR-7974 1 0 0
chr19:38815911|38816306 hsa-miR-7977 0 1 0
chr19:38815911|38816306 hsa-miR-154-5p 0 1 0
chr19:38815911|38816306 hsa-miR-4731-5p 0 1 0
chr19:38815911|38816306 hsa-miR-7155-5p 1 1 0
chr19:38815911|38816306 hsa-miR-6861-5p 1 0 0
chr19:38815911|38816306 hsa-miR-4687-3p 1 0 0
chr19:38815911|38816306 hsa-miR-1233-3p 0 1 0
chr19:38815911|38816306 hsa-miR-1227-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6515-5p 0 1 0
chr19:38815911|38816306 hsa-miR-3677-5p 1 0 0
chr19:38815911|38816306 hsa-miR-4755-3p 0 1 0
chr19:38815911|38816306 hsa-miR-6741-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6727-5p 1 0 0
chr19:38815911|38816306 hsa-miR-4474-3p 1 0 0
chr19:38815911|38816306 hsa-miR-6759-5p 1 0 0
chr19:38815911|38816306 hsa-miR-3187-3p 1 0 0
chr19:38815911|38816306 hsa-miR-8069 1 0 0
chr19:38815911|38816306 hsa-miR-5589-5p 0 1 0
chr19:38815911|38816306 hsa-miR-6742-5p 0 1 0
chr19:38815911|38816306 hsa-miR-6796-5p 1 1 0
chr19:38815911|38816306 hsa-miR-4753-3p 0 1 0
chr19:38815911|38816306 hsa-miR-7855-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6882-3p 0 1 0
chr19:38815911|38816306 hsa-miR-6788-3p 1 0 0
chr19:38815911|38816306 hsa-miR-4436b-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6786-5p 1 0 0
chr19:38815911|38816306 hsa-miR-1226-5p 1 1 0
chr19:38815911|38816306 hsa-miR-1908-3p 1 0 0
chr19:38815911|38816306 hsa-miR-4640-5p 1 0 0
chr19:38815911|38816306 hsa-miR-3667-3p 0 1 0
chr19:38815911|38816306 hsa-miR-3191-5p 1 1 0
chr19:38815911|38816306 hsa-miR-3677-3p 1 0 0
chr19:38815911|38816306 hsa-miR-6749-5p 1 1 0
chr19:38815911|38816306 hsa-miR-6878-3p 0 1 0
chr19:38815911|38816306 hsa-miR-7156-3p 0 1 0
chr19:38815911|38816306 hsa-miR-211-5p 0 1 0
chr19:38815911|38816306 hsa-miR-1250-5p 0 1 0
chr19:38815911|38816306 hsa-miR-4778-3p 0 1 0
chr19:38815911|38816306 hsa-miR-6886-3p 0 1 0
chr19:38815911|38816306 hsa-miR-6770-3p 0 1 0
chr19:38815911|38816306 hsa-miR-204-5p 0 1 0
chr19:38815911|38816306 hsa-miR-3670 1 0 0
chr19:38815911|38816306 hsa-miR-6734-3p 0 1 0
chr19:38815911|38816306 hsa-miR-6780b-3p 1 1 0
chr19:38815911|38816306 hsa-miR-10400-5p 1 0 0
chr19:38815911|38816306 hsa-miR-1233-5p 1 0 0
chr19:38815911|38816306 hsa-miR-4763-3p 1 0 0
chr19:38815911|38816306 hsa-miR-6769b-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6778-5p 1 0 0
chr19:38815911|38816306 hsa-miR-5001-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6737-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6743-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6803-5p 1 0 0
chr19:38815911|38816306 hsa-miR-7107-5p 1 0 0
chr19:38815911|38816306 hsa-miR-11181-3p 0 1 0
chr19:38815911|38816306 hsa-miR-1249-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6751-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6774-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6797-5p 1 0 0
chr19:38815911|38816306 hsa-miR-3620-5p 1 1 0
chr19:38815911|38816306 hsa-miR-5189-5p 1 1 0
chr19:38815911|38816306 hsa-miR-328-5p 1 1 0
chr19:38815911|38816306 hsa-miR-4632-5p 1 0 0
chr19:38815911|38816306 hsa-miR-4726-5p 1 0 0
chr19:38815911|38816306 hsa-miR-4745-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6846-5p 1 1 0
chr19:38815911|38816306 hsa-miR-6848-5p 1 0 0
chr19:38815911|38816306 hsa-miR-3187-5p 1 1 0
chr19:38815911|38816306 hsa-miR-939-5p 1 0 0
chr19:38815911|38816306 hsa-miR-4758-5p 1 0 0
chr19:38815911|38816306 hsa-miR-4646-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6724-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6791-5p 1 1 0
chr19:38815911|38816306 hsa-miR-6762-5p 1 0 0
chr19:38815911|38816306 hsa-miR-6801-3p 0 1 0
chr19:38815911|38816306 hsa-miR-6810-3p 0 1 0
chr19:38815911|38816306 hsa-miR-4723-3p 0 1 0
chr19:38815911|38816306 hsa-miR-6884-5p 0 1 0
chr19:38815911|38816306 hsa-miR-6744-3p 0 1 0
chr19:38815911|38816306 hsa-miR-6783-3p 1 1 0
chr19:38815911|38816306 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:38815911|38816306
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MPLGILERGDKGTRRGLQPSRPGCPQH
Nucleotide Sequence ATGCCACTAGGAATTCTAGAGCGAGGAGACAAGGGGACCCGGAGAGGCCTCCAACCCTCCAGGCCTGGCTGCCCCCAGCACTGA
CircID chr19:38815911|38816306
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence LVLCTATGLLLEISAASAKAASSMTSLSGNTRLQ
Nucleotide Sequence TTGGTGCTCTGCACCGCCACGGGGCTCTTGCTGGAAATCTCGGCCGCCAGCGCTAAGGCAGCATCCAGCATGACCTCTTTGTCTGGGAACACCCGGCTGCAGTGA
CircID chr19:38815911|38816306
ORF Type ORF3
Protein Length 49
Nucleotide Length 150
Protein Sequence MGTPGCSERDQGPGGLGRALSSSLPQMKKWPLTEEGPRPQRNSPIRAGG
Nucleotide Sequence CTGGGAACACCCGGCTGCAGTGAAAGAGATCAGGGACCGGGTGGGCTGGGAAGGGCTCTCTCCTCCAGCCTCCCGCAGATGAAGAAGTGGCCACTCACAGAGGAAGGCCCAAGACCCCAGAGAAACAGCCCAATCAGAGCAGGGGGCTGA
CircID chr19:38815911|38816306
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MSSPRKDATRNSRARRQGDPERPPTLQAWLPPALSYHGHGPT
Nucleotide Sequence ATGAGCTCACCAAGAAAGGATGCCACTAGGAATTCTAGAGCGAGGAGACAAGGGGACCCGGAGAGGCCTCCAACCCTCCAGGCCTGGCTGCCCCCAGCACTGAGCTACCACGGCCATGGCCCTACCTGA
CircID chr19:38815911|38816306
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MAVVAQCWGQPGLEGWRPLRVPLSPRSRIPSGILSW
Nucleotide Sequence ATGGCCGTGGTAGCTCAGTGCTGGGGGCAGCCAGGCCTGGAGGGTTGGAGGCCTCTCCGGGTCCCCTTGTCTCCTCGCTCTAGAATTCCTAGTGGCATCCTTTCTTGGTGA
CircID chr19:38815911|38816306
ORF Type ORF6
Protein Length 49
Nucleotide Length 150
Protein Sequence MGSWAFLCEWPLLHLREAGGESPSQPTRSLISFTAAGCSQTKRSCWMLP
Nucleotide Sequence CTGGGGTCTTGGGCCTTCCTCTGTGAGTGGCCACTTCTTCATCTGCGGGAGGCTGGAGGAGAGAGCCCTTCCCAGCCCACCCGGTCCCTGATCTCTTTCACTGCAGCCGGGTGTTCCCAGACAAAGAGGTCATGCTGGATGCTGCCTTAG
CircID chr19:38815911|38816306
ORF Type ORF7
Protein Length 42
Nucleotide Length 129
Protein Sequence MWGQPPALIGLFLWGLGPSSVSGHFFICGRLEERALPSPPGP
Nucleotide Sequence TTGTGGGGTCAGCCCCCTGCTCTGATTGGGCTGTTTCTCTGGGGTCTTGGGCCTTCCTCTGTGAGTGGCCACTTCTTCATCTGCGGGAGGCTGGAGGAGAGAGCCCTTCCCAGCCCACCCGGTCCCTGA
CircID chr19:38815911|38816306
ORF Type ORF8
Protein Length 34
Nucleotide Length 102
Protein Sequence MQPGVPRQRGHAGCCLSAGGRDFQQEPRGGAEHQ
Nucleotide Sequence CTGCAGCCGGGTGTTCCCAGACAAAGAGGTCATGCTGGATGCTGCCTTAGCGCTGGCGGCCGAGATTTCCAGCAAGAGCCCCGTGGCGGTGCAGAGCACCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab