CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39173343|39173675
Strand +
CircType exon
Host Gene ENSG00000130669.16;
Algorism CIRI2;
Sequence CTCGGGCTCGGGTGGGAGGCCGGGAGGAGGAGGAGGAGGACTGGGGGATGGCCAGGCCCCCCGCTGATGGCCCGTTAGGGGCCACGTCATGAGGCTCCCCCTGAAACAGAAGAGAGGTAGCTGTCAGTGATGGGTGCCAGGGAGCAGCTCTGCTCCCTAAGCAGGAGAGAGACCCAGCGATGGGACAGACACATGGGTGGTCAGGATGAGATGCACGGTGGTGGGGCGGGGCTGGAAGGTGGGGACAGAGGAGCAACGGGCAGGGGACAGTGGGGGCCCTGGGGCGGGGGATGGGTTACCTGGGCACCCCGGGATGGGTGGTCCGTGTCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39173343|39173675 hsa-miR-370-5p 0 0 1
chr19:39173343|39173675 hsa-miR-370-3p 0 0 1
chr19:39173343|39173675 hsa-miR-517-5p 0 0 1
chr19:39173343|39173675 hsa-miR-517b-3p 0 0 1
chr19:39173343|39173675 hsa-miR-558 0 0 1
chr19:39173343|39173675 hsa-miR-939-5p 0 0 1
chr19:39173343|39173675 hsa-miR-939-3p 0 0 1
chr19:39173343|39173675 hsa-miR-1236-5p 0 0 1
chr19:39173343|39173675 hsa-miR-1236-3p 0 0 1
chr19:39173343|39173675 hsa-miR-663b 1 0 1
chr19:39173343|39173675 hsa-miR-1204 0 0 1
chr19:39173343|39173675 hsa-miR-1321 0 0 1
chr19:39173343|39173675 hsa-miR-296-5p 1 0 1
chr19:39173343|39173675 hsa-miR-615-3p 0 0 1
chr19:39173343|39173675 hsa-miR-532-3p 0 0 1
chr19:39173343|39173675 hsa-miR-193a-5p 0 0 1
chr19:39173343|39173675 hsa-miR-361-3p 0 0 1
chr19:39173343|39173675 hsa-miR-1224-3p 1 0 1
chr19:39173343|39173675 hsa-miR-331-3p 0 0 1
chr19:39173343|39173675 hsa-miR-342-5p 0 0 1
chr19:39173343|39173675 hsa-miR-220b 0 0 1
chr19:39173343|39173675 hsa-miR-1260 0 0 1
chr19:39173343|39173675 hsa-miR-1280 0 0 1
chr19:39173343|39173675 hsa-miR-923 0 0 1
chr19:39173343|39173675 hsa-miR-133b 1 0 0
chr19:39173343|39173675 hsa-miR-346 1 0 0
chr19:39173343|39173675 hsa-miR-662 1 0 0
chr19:39173343|39173675 hsa-miR-1248 1 0 0
chr19:39173343|39173675 hsa-miR-1260a 1 0 0
chr19:39173343|39173675 hsa-miR-1470 1 0 0
chr19:39173343|39173675 hsa-miR-1538 1 0 0
chr19:39173343|39173675 hsa-miR-1539 1 0 0
chr19:39173343|39173675 hsa-miR-1913 1 0 0
chr19:39173343|39173675 hsa-miR-1976 1 0 0
chr19:39173343|39173675 hsa-miR-718 1 0 0
chr19:39173343|39173675 hsa-miR-1260b 1 0 0
chr19:39173343|39173675 hsa-miR-4326 1 0 0
chr19:39173343|39173675 hsa-miR-4279 1 0 0
chr19:39173343|39173675 hsa-miR-3943 1 0 0
chr19:39173343|39173675 hsa-miR-4512 1 0 0
chr19:39173343|39173675 hsa-miR-4526 1 0 0
chr19:39173343|39173675 hsa-miR-3972 1 0 0
chr19:39173343|39173675 hsa-miR-5193 1 0 0
chr19:39173343|39173675 hsa-miR-8073 1 0 0
chr19:39173343|39173675 hsa-miR-10226 1 0 0
chr19:39173343|39173675 hsa-miR-197-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6749-3p 1 0 0
chr19:39173343|39173675 hsa-miR-18a-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6747-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6879-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4726-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6720-5p 1 0 0
chr19:39173343|39173675 hsa-miR-1233-3p 1 0 0
chr19:39173343|39173675 hsa-miR-766-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6892-3p 1 0 0
chr19:39173343|39173675 hsa-miR-210-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6881-3p 1 0 0
chr19:39173343|39173675 hsa-miR-874-5p 1 0 0
chr19:39173343|39173675 hsa-miR-3189-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6849-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4728-3p 1 0 0
chr19:39173343|39173675 hsa-miR-7110-3p 1 0 0
chr19:39173343|39173675 hsa-miR-1915-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6845-3p 1 0 0
chr19:39173343|39173675 hsa-miR-877-3p 1 0 0
chr19:39173343|39173675 hsa-miR-185-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6765-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6728-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4713-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6884-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6772-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4793-5p 1 0 0
chr19:39173343|39173675 hsa-miR-4763-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6763-3p 1 0 0
chr19:39173343|39173675 hsa-miR-7108-3p 1 0 0
chr19:39173343|39173675 hsa-miR-1247-5p 1 0 0
chr19:39173343|39173675 hsa-miR-4707-3p 1 0 0
chr19:39173343|39173675 hsa-miR-1908-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6894-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6803-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6514-3p 1 0 0
chr19:39173343|39173675 hsa-miR-7113-3p 1 0 0
chr19:39173343|39173675 hsa-miR-3191-5p 1 0 0
chr19:39173343|39173675 hsa-miR-7111-3p 1 0 0
chr19:39173343|39173675 hsa-miR-5196-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4667-3p 1 0 0
chr19:39173343|39173675 hsa-miR-1304-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4640-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6769a-3p 1 0 0
chr19:39173343|39173675 hsa-miR-339-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6825-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4646-3p 1 0 0
chr19:39173343|39173675 hsa-miR-7106-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6785-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4687-5p 1 0 0
chr19:39173343|39173675 hsa-miR-3180-5p 1 0 0
chr19:39173343|39173675 hsa-miR-4758-3p 1 0 0
chr19:39173343|39173675 hsa-miR-1910-5p 1 0 0
chr19:39173343|39173675 hsa-miR-2276-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6752-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6782-3p 1 0 0
chr19:39173343|39173675 hsa-miR-1296-5p 1 0 0
chr19:39173343|39173675 hsa-miR-4529-5p 1 0 0
chr19:39173343|39173675 hsa-miR-1914-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6886-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4749-3p 1 0 0
chr19:39173343|39173675 hsa-miR-328-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6795-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4746-5p 1 0 0
chr19:39173343|39173675 hsa-miR-3151-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6859-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6777-3p 1 0 0
chr19:39173343|39173675 hsa-miR-1292-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6760-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6880-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6748-3p 1 0 0
chr19:39173343|39173675 hsa-miR-3620-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4433a-5p 1 0 0
chr19:39173343|39173675 hsa-miR-4750-3p 1 0 0
chr19:39173343|39173675 hsa-miR-3173-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6779-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4433b-5p 1 0 0
chr19:39173343|39173675 hsa-miR-6812-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6729-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6750-3p 1 0 0
chr19:39173343|39173675 hsa-miR-3162-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6885-3p 1 0 0
chr19:39173343|39173675 hsa-miR-3664-5p 1 0 0
chr19:39173343|39173675 hsa-miR-133a-3p 1 0 0
chr19:39173343|39173675 hsa-miR-1343-5p 1 0 0
chr19:39173343|39173675 hsa-miR-3127-3p 1 0 0
chr19:39173343|39173675 hsa-miR-320a-5p 1 0 0
chr19:39173343|39173675 hsa-miR-4685-3p 1 0 0
chr19:39173343|39173675 hsa-miR-10396a-3p 1 0 0
chr19:39173343|39173675 hsa-miR-10396b-3p 1 0 0
chr19:39173343|39173675 hsa-miR-5008-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4664-5p 1 0 0
chr19:39173343|39173675 hsa-miR-324-3p 1 0 0
chr19:39173343|39173675 hsa-miR-4722-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6727-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6893-3p 1 0 0
chr19:39173343|39173675 hsa-miR-193b-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6511a-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6756-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6784-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6792-3p 1 0 0
chr19:39173343|39173675 hsa-miR-10401-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6801-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6805-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6810-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6829-3p 1 0 0
chr19:39173343|39173675 hsa-miR-9851-3p 1 0 0
chr19:39173343|39173675 hsa-miR-10392-3p 1 0 0
chr19:39173343|39173675 hsa-miR-3059-5p 1 0 0
chr19:39173343|39173675 hsa-miR-4723-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6511b-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6769b-3p 1 0 0
chr19:39173343|39173675 hsa-miR-7114-3p 1 0 0
chr19:39173343|39173675 hsa-miR-1234-3p 1 0 0
chr19:39173343|39173675 hsa-miR-6824-3p 1 0 0
chr19:39173343|39173675 hsa-miR-3681-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:39173343|39173675
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MSVMGAREQLCSLSRRETQRWDRHMGGQDEMHGGGAGLEGGDRGATGRGQWGPWGGGWVTWAPRDGWSVSA
Nucleotide Sequence CTGTCAGTGATGGGTGCCAGGGAGCAGCTCTGCTCCCTAAGCAGGAGAGAGACCCAGCGATGGGACAGACACATGGGTGGTCAGGATGAGATGCACGGTGGTGGGGCGGGGCTGGAAGGTGGGGACAGAGGAGCAACGGGCAGGGGACAGTGGGGGCCCTGGGGCGGGGGATGGGTTACCTGGGCACCCCGGGATGGGTGGTCCGTGTCAGCC
CircID chr19:39173343|39173675
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MRCTVVGRGWKVGTEEQRAGDSGGPGAGDGLPGHPGMGGPCQ
Nucleotide Sequence ATGAGATGCACGGTGGTGGGGCGGGGCTGGAAGGTGGGGACAGAGGAGCAACGGGCAGGGGACAGTGGGGGCCCTGGGGCGGGGGATGGGTTACCTGGGCACCCCGGGATGGGTGGTCCGTGTCAG
CircID chr19:39173343|39173675
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MSPARCSSVPTFQPRPTTVHLILTTHVSVPSLGLSPA
Nucleotide Sequence CTGTCCCCTGCCCGTTGCTCCTCTGTCCCCACCTTCCAGCCCCGCCCCACCACCGTGCATCTCATCCTGACCACCCATGTGTCTGTCCCATCGCTGGGTCTCTCTCCTGCTTAG
CircID chr19:39173343|39173675
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MTWPLTGHQRGAWPSPSPPPPPPGLPPEPE
Nucleotide Sequence ATGACGTGGCCCCTAACGGGCCATCAGCGGGGGGCCTGGCCATCCCCCAGTCCTCCTCCTCCTCCTCCCGGCCTCCCACCCGAGCCCGAG
CircID chr19:39173343|39173675
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MCLSHRWVSLLLREQSCSLAPITDSYLSSVSGGAS
Nucleotide Sequence ATGTGTCTGTCCCATCGCTGGGTCTCTCTCCTGCTTAGGGAGCAGAGCTGCTCCCTGGCACCCATCACTGACAGCTACCTCTCTTCTGTTTCAGGGGGAGCCTCATGA
CircID chr19:39173343|39173675
ORF Type ORF6
Protein Length 85
Nucleotide Length 255
Protein Sequence MLLCPHLPAPPHHRASHPDHPCVCPIAGSLSCLGSRAAPWHPSLTATSLLFQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRAR
Nucleotide Sequence TTGCTCCTCTGTCCCCACCTTCCAGCCCCGCCCCACCACCGTGCATCTCATCCTGACCACCCATGTGTCTGTCCCATCGCTGGGTCTCTCTCCTGCTTAGGGAGCAGAGCTGCTCCCTGGCACCCATCACTGACAGCTACCTCTCTTCTGTTTCAGGGGGAGCCTCATGACGTGGCCCCTAACGGGCCATCAGCGGGGGGCCTGGCCATCCCCCAGTCCTCCTCCTCCTCCTCCCGGCCTCCCACCCGAGCCCGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab