CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39383231|39383593
Strand -
CircType exon
Host Gene ENSG00000179134.13;
Algorism CIRI2;
Sequence CTGGAGATCAATCCCACTCTGGAGTCTCTGTGTCTGAGCATGACAGAACACGCCTTGGGTGGTGAGCATTTCCTCTTTCCCTGACCCAGCTCCCACCTACCCAGCGTCTCTGCCTCTGAACTGAGCAACTCAGAGTCATCCTGAGGGGTCCCCAGGGGAGGCCAGACTCCAGGGAGGGCCTGACTGGGATGACAGGCTACCTGAGTGCCTTTTCTTGGGCCTCCCTCCAGCTCCTGATCTTCCTCCCTTCCTCCCTTTCTTACCACAGATGGGACAGACAAAACCTCCACCATCTGACGGGACCCACAGCCCAGCGCACCCATAGGCTCCCTGGGCGGCGGGCGGGGGCCAACCCCCAACGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39383231|39383593 hsa-miR-197-5p 0 0 1
chr19:39383231|39383593 hsa-miR-197-3p 0 0 1
chr19:39383231|39383593 hsa-miR-328-5p 0 0 1
chr19:39383231|39383593 hsa-miR-328-3p 0 0 1
chr19:39383231|39383593 hsa-miR-506-5p 0 0 1
chr19:39383231|39383593 hsa-miR-506-3p 0 0 1
chr19:39383231|39383593 hsa-miR-510-5p 0 0 1
chr19:39383231|39383593 hsa-miR-510-3p 0 0 1
chr19:39383231|39383593 hsa-miR-571 0 0 1
chr19:39383231|39383593 hsa-miR-583 0 1 1
chr19:39383231|39383593 hsa-miR-596 0 0 1
chr19:39383231|39383593 hsa-miR-632 0 0 1
chr19:39383231|39383593 hsa-miR-766-5p 0 0 1
chr19:39383231|39383593 hsa-miR-766-3p 0 0 1
chr19:39383231|39383593 hsa-miR-708-5p 0 0 1
chr19:39383231|39383593 hsa-miR-708-3p 0 0 1
chr19:39383231|39383593 hsa-miR-920 0 1 1
chr19:39383231|39383593 hsa-miR-1178-5p 0 0 1
chr19:39383231|39383593 hsa-miR-1178-3p 0 0 1
chr19:39383231|39383593 hsa-miR-1231 0 0 1
chr19:39383231|39383593 hsa-miR-1247-5p 0 0 1
chr19:39383231|39383593 hsa-miR-1247-3p 0 0 1
chr19:39383231|39383593 hsa-miR-1275 0 0 1
chr19:39383231|39383593 hsa-miR-1321 0 0 1
chr19:39383231|39383593 hsa-miR-1324 0 0 1
chr19:39383231|39383593 hsa-miR-1827 0 0 1
chr19:39383231|39383593 hsa-miR-139-3p 0 0 1
chr19:39383231|39383593 hsa-miR-1289 0 0 1
chr19:39383231|39383593 hsa-miR-525-5p 0 1 1
chr19:39383231|39383593 hsa-miR-508-5p 0 1 1
chr19:39383231|39383593 hsa-miR-28-5p 0 0 1
chr19:39383231|39383593 hsa-miR-331-3p 0 1 1
chr19:39383231|39383593 hsa-miR-520a-5p 0 1 1
chr19:39383231|39383593 hsa-miR-220b 0 0 1
chr19:39383231|39383593 hsa-miR-124 0 0 1
chr19:39383231|39383593 hsa-miR-219-1-3p 0 0 1
chr19:39383231|39383593 hsa-miR-658 1 0 0
chr19:39383231|39383593 hsa-miR-762 1 1 0
chr19:39383231|39383593 hsa-miR-765 1 0 0
chr19:39383231|39383593 hsa-miR-3139 0 1 0
chr19:39383231|39383593 hsa-miR-3141 1 0 0
chr19:39383231|39383593 hsa-miR-3154 1 1 0
chr19:39383231|39383593 hsa-miR-4298 1 0 0
chr19:39383231|39383593 hsa-miR-4300 0 1 0
chr19:39383231|39383593 hsa-miR-4309 0 1 0
chr19:39383231|39383593 hsa-miR-4308 0 1 0
chr19:39383231|39383593 hsa-miR-4259 1 0 0
chr19:39383231|39383593 hsa-miR-4270 0 1 0
chr19:39383231|39383593 hsa-miR-4271 0 1 0
chr19:39383231|39383593 hsa-miR-4281 1 0 0
chr19:39383231|39383593 hsa-miR-3657 0 1 0
chr19:39383231|39383593 hsa-miR-3916 1 1 0
chr19:39383231|39383593 hsa-miR-378g 0 1 0
chr19:39383231|39383593 hsa-miR-4449 1 0 0
chr19:39383231|39383593 hsa-miR-3135b 0 1 0
chr19:39383231|39383593 hsa-miR-4462 1 0 0
chr19:39383231|39383593 hsa-miR-4476 1 1 0
chr19:39383231|39383593 hsa-miR-4487 0 1 0
chr19:39383231|39383593 hsa-miR-4498 1 1 0
chr19:39383231|39383593 hsa-miR-4505 1 0 0
chr19:39383231|39383593 hsa-miR-2392 1 0 0
chr19:39383231|39383593 hsa-miR-4507 1 0 0
chr19:39383231|39383593 hsa-miR-4510 0 1 0
chr19:39383231|39383593 hsa-miR-4518 0 1 0
chr19:39383231|39383593 hsa-miR-4533 1 0 0
chr19:39383231|39383593 hsa-miR-4534 1 0 0
chr19:39383231|39383593 hsa-miR-1587 1 0 0
chr19:39383231|39383593 hsa-miR-4651 1 0 0
chr19:39383231|39383593 hsa-miR-4654 1 0 0
chr19:39383231|39383593 hsa-miR-4688 1 0 0
chr19:39383231|39383593 hsa-miR-4706 1 0 0
chr19:39383231|39383593 hsa-miR-4739 1 1 0
chr19:39383231|39383593 hsa-miR-5787 1 0 0
chr19:39383231|39383593 hsa-miR-6085 1 1 0
chr19:39383231|39383593 hsa-miR-6090 1 0 0
chr19:39383231|39383593 hsa-miR-6124 1 0 0
chr19:39383231|39383593 hsa-miR-6127 1 1 0
chr19:39383231|39383593 hsa-miR-6133 1 1 0
chr19:39383231|39383593 hsa-miR-6745 1 0 0
chr19:39383231|39383593 hsa-miR-7974 0 1 0
chr19:39383231|39383593 hsa-miR-8085 1 0 0
chr19:39383231|39383593 hsa-miR-12118 1 0 0
chr19:39383231|39383593 hsa-miR-12128 0 1 0
chr19:39383231|39383593 hsa-miR-134-3p 0 1 0
chr19:39383231|39383593 hsa-miR-6734-5p 1 0 0
chr19:39383231|39383593 hsa-miR-4731-5p 1 0 0
chr19:39383231|39383593 hsa-miR-4433a-3p 1 0 0
chr19:39383231|39383593 hsa-miR-125b-1-3p 1 0 0
chr19:39383231|39383593 hsa-miR-215-3p 0 1 0
chr19:39383231|39383593 hsa-miR-6861-5p 1 1 0
chr19:39383231|39383593 hsa-miR-7106-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6825-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6894-5p 1 1 0
chr19:39383231|39383593 hsa-miR-210-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6799-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6510-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6515-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6880-5p 1 0 0
chr19:39383231|39383593 hsa-miR-7847-3p 1 0 0
chr19:39383231|39383593 hsa-miR-6730-5p 1 0 0
chr19:39383231|39383593 hsa-miR-24-3p 1 1 0
chr19:39383231|39383593 hsa-miR-6741-5p 1 1 0
chr19:39383231|39383593 hsa-miR-659-3p 1 0 0
chr19:39383231|39383593 hsa-miR-3180-3p 1 0 0
chr19:39383231|39383593 hsa-miR-6748-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6793-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6827-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6760-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6881-5p 1 0 0
chr19:39383231|39383593 hsa-miR-2467-3p 1 1 0
chr19:39383231|39383593 hsa-miR-6782-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6874-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6810-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6852-5p 0 1 0
chr19:39383231|39383593 hsa-miR-7109-5p 1 0 0
chr19:39383231|39383593 hsa-miR-7108-3p 0 1 0
chr19:39383231|39383593 hsa-miR-4707-3p 0 1 0
chr19:39383231|39383593 hsa-miR-1229-5p 1 1 0
chr19:39383231|39383593 hsa-miR-4640-5p 1 0 0
chr19:39383231|39383593 hsa-miR-7113-3p 0 1 0
chr19:39383231|39383593 hsa-miR-3202 1 1 0
chr19:39383231|39383593 hsa-miR-6878-3p 0 1 0
chr19:39383231|39383593 hsa-miR-149-3p 1 0 0
chr19:39383231|39383593 hsa-miR-6830-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6824-5p 1 0 0
chr19:39383231|39383593 hsa-miR-3162-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6802-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6878-5p 1 0 0
chr19:39383231|39383593 hsa-miR-5584-5p 0 1 0
chr19:39383231|39383593 hsa-miR-5000-5p 0 1 0
chr19:39383231|39383593 hsa-miR-7113-5p 0 1 0
chr19:39383231|39383593 hsa-miR-329-5p 0 1 0
chr19:39383231|39383593 hsa-miR-124-3p 0 1 0
chr19:39383231|39383593 hsa-miR-1207-5p 1 1 0
chr19:39383231|39383593 hsa-miR-1233-5p 1 1 0
chr19:39383231|39383593 hsa-miR-4763-3p 1 0 0
chr19:39383231|39383593 hsa-miR-6769b-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6778-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6812-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6816-5p 1 0 0
chr19:39383231|39383593 hsa-miR-5001-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6726-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6743-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6754-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6756-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6803-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6813-5p 1 0 0
chr19:39383231|39383593 hsa-miR-11181-3p 1 0 0
chr19:39383231|39383593 hsa-miR-1249-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6779-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6780a-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6797-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6808-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6879-5p 1 0 0
chr19:39383231|39383593 hsa-miR-7111-5p 0 1 0
chr19:39383231|39383593 hsa-miR-3620-5p 1 0 0
chr19:39383231|39383593 hsa-miR-4728-5p 1 0 0
chr19:39383231|39383593 hsa-miR-5196-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6780b-5p 1 0 0
chr19:39383231|39383593 hsa-miR-10526-3p 1 0 0
chr19:39383231|39383593 hsa-miR-1237-5p 1 0 0
chr19:39383231|39383593 hsa-miR-4701-3p 1 0 0
chr19:39383231|39383593 hsa-miR-6795-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6846-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6848-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6858-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6883-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6887-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6889-5p 0 1 0
chr19:39383231|39383593 hsa-miR-4723-5p 0 1 0
chr19:39383231|39383593 hsa-miR-939-5p 1 1 0
chr19:39383231|39383593 hsa-miR-10394-3p 1 0 0
chr19:39383231|39383593 hsa-miR-6739-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6758-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6856-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6736-5p 1 0 0
chr19:39383231|39383593 hsa-miR-3173-3p 1 0 0
chr19:39383231|39383593 hsa-miR-4646-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6876-5p 1 1 0
chr19:39383231|39383593 hsa-miR-6891-5p 1 0 0
chr19:39383231|39383593 hsa-miR-4716-3p 1 0 0
chr19:39383231|39383593 hsa-miR-6766-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6785-5p 1 0 0
chr19:39383231|39383593 hsa-miR-5591-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6791-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6511a-3p 0 1 0
chr19:39383231|39383593 hsa-miR-6511b-3p 0 1 0
chr19:39383231|39383593 hsa-miR-4756-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6859-5p 0 1 0
chr19:39383231|39383593 hsa-miR-6500-5p 1 0 0
chr19:39383231|39383593 hsa-miR-6764-5p 0 1 0
chr19:39383231|39383593 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:39383231|39383593
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence LEINPTLESLCLSMTEHALGGEHFLFP
Nucleotide Sequence CTGGAGATCAATCCCACTCTGGAGTCTCTGTGTCTGAGCATGACAGAACACGCCTTGGGTGGTGAGCATTTCCTCTTTCCCTGA
CircID chr19:39383231|39383593
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MGLPPAPDLPPFLPFLPQMGQTKPPPSDGTHSPAHP
Nucleotide Sequence TTGGGCCTCCCTCCAGCTCCTGATCTTCCTCCCTTCCTCCCTTTCTTACCACAGATGGGACAGACAAAACCTCCACCATCTGACGGGACCCACAGCCCAGCGCACCCATAG
CircID chr19:39383231|39383593
ORF Type ORF3
Protein Length 74
Nucleotide Length 222
Protein Sequence MRGPQGRPDSREGLTGMTGYLSAFSWASLQLLIFLPSSLSYHRWDRQNLHHLTGPTAQRTHRLPGRRAGANPQR
Nucleotide Sequence CTGAGGGGTCCCCAGGGGAGGCCAGACTCCAGGGAGGGCCTGACTGGGATGACAGGCTACCTGAGTGCCTTTTCTTGGGCCTCCCTCCAGCTCCTGATCTTCCTCCCTTCCTCCCTTTCTTACCACAGATGGGACAGACAAAACCTCCACCATCTGACGGGACCCACAGCCCAGCGCACCCATAGGCTCCCTGGGCGGCGGGCGGGGGCCAACCCCCAACGG
CircID chr19:39383231|39383593
ORF Type ORF4
Protein Length 57
Nucleotide Length 174
Protein Sequence MWVPSDGGGFVCPICGKKGRKGGRSGAGGRPKKRHSGSLSSQSGPPWSLASPGDPSG
Nucleotide Sequence CTGTGGGTCCCGTCAGATGGTGGAGGTTTTGTCTGTCCCATCTGTGGTAAGAAAGGGAGGAAGGGAGGAAGATCAGGAGCTGGAGGGAGGCCCAAGAAAAGGCACTCAGGTAGCCTGTCATCCCAGTCAGGCCCTCCCTGGAGTCTGGCCTCCCCTGGGGACCCCTCAGGATGA
CircID chr19:39383231|39383593
ORF Type ORF5
Protein Length 119
Nucleotide Length 357
Protein Sequence MGVGPRPPPREPMGALGCGSRQMVEVLSVPSVVRKGGREEDQELEGGPRKGTQVACHPSQALPGVWPPLGTPQDDSELLSSEAETLGRWELGQGKRKCSPPKACSVMLRHRDSRVGLIS
Nucleotide Sequence TTGGGGGTTGGCCCCCGCCCGCCGCCCAGGGAGCCTATGGGTGCGCTGGGCTGTGGGTCCCGTCAGATGGTGGAGGTTTTGTCTGTCCCATCTGTGGTAAGAAAGGGAGGAAGGGAGGAAGATCAGGAGCTGGAGGGAGGCCCAAGAAAAGGCACTCAGGTAGCCTGTCATCCCAGTCAGGCCCTCCCTGGAGTCTGGCCTCCCCTGGGGACCCCTCAGGATGACTCTGAGTTGCTCAGTTCAGAGGCAGAGACGCTGGGTAGGTGGGAGCTGGGTCAGGGAAAGAGGAAATGCTCACCACCCAAGGCGTGTTCTGTCATGCTCAGACACAGAGACTCCAGAGTGGGATTGATCTCC
CircID chr19:39383231|39383593
ORF Type ORF6
Protein Length 30
Nucleotide Length 93
Protein Sequence MAPARRPGSLWVRWAVGPVRWWRFCLSHLW
Nucleotide Sequence TTGGCCCCCGCCCGCCGCCCAGGGAGCCTATGGGTGCGCTGGGCTGTGGGTCCCGTCAGATGGTGGAGGTTTTGTCTGTCCCATCTGTGGTAA
CircID chr19:39383231|39383593
ORF Type ORF7
Protein Length 54
Nucleotide Length 165
Protein Sequence MESGLPWGPLRMTLSCSVQRQRRWVGGSWVRERGNAHHPRRVLSCSDTETPEWD
Nucleotide Sequence CTGGAGTCTGGCCTCCCCTGGGGACCCCTCAGGATGACTCTGAGTTGCTCAGTTCAGAGGCAGAGACGCTGGGTAGGTGGGAGCTGGGTCAGGGAAAGAGGAAATGCTCACCACCCAAGGCGTGTTCTGTCATGCTCAGACACAGAGACTCCAGAGTGGGATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab