CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39389362|39389700
Strand -
CircType exon
Host Gene ENSG00000006712.13;
Algorism CIRI2;
Sequence CACCTTCGCGTGCTGCTGGGATCTCTTGGAGCTGGTGGGGGCCTGAATCTCCTCTTCCAAAAGTTTCTCATCAGCTGGATCTAGAAGAACTAGAGGAGAGCGGGGGGCAGGAGGACCATGAGGGAGGCCCAGGCCTGAGCCTTTGCTGACCTAGAGCAGACCCTCCCTGTCTCCCCACACACCATTGGGGTCGATGCGGTAGGTGTCAGGATTGATGAGATCGATGGTGACCCCCAGGTCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39389362|39389700 hsa-miR-15a-5p 0 0 1
chr19:39389362|39389700 hsa-miR-15a-3p 0 0 1
chr19:39389362|39389700 hsa-miR-15b-5p 0 0 1
chr19:39389362|39389700 hsa-miR-15b-3p 0 0 1
chr19:39389362|39389700 hsa-miR-195-5p 0 0 1
chr19:39389362|39389700 hsa-miR-195-3p 0 0 1
chr19:39389362|39389700 hsa-miR-424-5p 0 0 1
chr19:39389362|39389700 hsa-miR-424-3p 0 0 1
chr19:39389362|39389700 hsa-miR-497-5p 0 0 1
chr19:39389362|39389700 hsa-miR-497-3p 0 0 1
chr19:39389362|39389700 hsa-miR-539-5p 0 0 1
chr19:39389362|39389700 hsa-miR-539-3p 0 0 1
chr19:39389362|39389700 hsa-miR-545-5p 0 0 1
chr19:39389362|39389700 hsa-miR-545-3p 0 0 1
chr19:39389362|39389700 hsa-miR-551a 0 0 1
chr19:39389362|39389700 hsa-miR-551b-5p 0 0 1
chr19:39389362|39389700 hsa-miR-551b-3p 0 0 1
chr19:39389362|39389700 hsa-miR-631 0 0 1
chr19:39389362|39389700 hsa-miR-637 0 0 1
chr19:39389362|39389700 hsa-miR-661 1 0 1
chr19:39389362|39389700 hsa-miR-939-5p 0 0 1
chr19:39389362|39389700 hsa-miR-939-3p 0 0 1
chr19:39389362|39389700 hsa-miR-1182 0 0 1
chr19:39389362|39389700 hsa-miR-1226-5p 0 0 1
chr19:39389362|39389700 hsa-miR-1226-3p 0 0 1
chr19:39389362|39389700 hsa-miR-1321 0 0 1
chr19:39389362|39389700 hsa-miR-491-5p 0 0 1
chr19:39389362|39389700 hsa-miR-767-3p 0 0 1
chr19:39389362|39389700 hsa-miR-324-3p 0 0 1
chr19:39389362|39389700 hsa-miR-518d-5p 0 0 1
chr19:39389362|39389700 hsa-miR-519b-5p 0 0 1
chr19:39389362|39389700 hsa-miR-519c-5p 0 0 1
chr19:39389362|39389700 hsa-miR-520c-5p 0 0 1
chr19:39389362|39389700 hsa-miR-16 0 0 1
chr19:39389362|39389700 hsa-miR-7 0 0 1
chr19:39389362|39389700 hsa-miR-644 0 0 1
chr19:39389362|39389700 hsa-miR-24 0 0 1
chr19:39389362|39389700 hsa-miR-526a 0 0 1
chr19:39389362|39389700 hsa-miR-147 0 0 1
chr19:39389362|39389700 hsa-miR-346 1 0 0
chr19:39389362|39389700 hsa-miR-1291 1 0 0
chr19:39389362|39389700 hsa-miR-1538 1 0 0
chr19:39389362|39389700 hsa-miR-4462 1 0 0
chr19:39389362|39389700 hsa-miR-4642 1 0 0
chr19:39389362|39389700 hsa-miR-4751 1 0 0
chr19:39389362|39389700 hsa-miR-6069 1 0 0
chr19:39389362|39389700 hsa-miR-9901 1 0 0
chr19:39389362|39389700 hsa-miR-4747-3p 1 0 0
chr19:39389362|39389700 hsa-miR-7845-5p 1 0 0
chr19:39389362|39389700 hsa-miR-6787-3p 1 0 0
chr19:39389362|39389700 hsa-miR-185-3p 1 0 0
chr19:39389362|39389700 hsa-miR-6810-5p 1 0 0
chr19:39389362|39389700 hsa-miR-1910-5p 1 0 0
chr19:39389362|39389700 hsa-miR-4649-3p 1 0 0
chr19:39389362|39389700 hsa-miR-11181-3p 1 0 0
chr19:39389362|39389700 hsa-miR-6795-5p 1 0 0
chr19:39389362|39389700 hsa-miR-6744-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr19:39389362|39389700
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MGVTIDLINPDTYRIDPNGVWGDREGLL
Nucleotide Sequence CTGGGGGTCACCATCGATCTCATCAATCCTGACACCTACCGCATCGACCCCAATGGTGTGTGGGGAGACAGGGAGGGTCTGCTCTAG

CircID chr19:39389362|39389700
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MGLPHGPPAPRSPLVLLDPADEKLLEEEIQAPTSSKRSQQHAKV
Nucleotide Sequence CTGGGCCTCCCTCATGGTCCTCCTGCCCCCCGCTCTCCTCTAGTTCTTCTAGATCCAGCTGATGAGAAACTTTTGGAAGAGGAGATTCAGGCCCCCACCAGCTCCAAGAGATCCCAGCAGCACGCGAAGGTG

CircID chr19:39389362|39389700
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MTPTASTPMVCGETGRVCSRSAKAQAWASLMVLLPPALL
Nucleotide Sequence CTGACACCTACCGCATCGACCCCAATGGTGTGTGGGGAGACAGGGAGGGTCTGCTCTAGGTCAGCAAAGGCTCAGGCCTGGGCCTCCCTCATGGTCCTCCTGCCCCCCGCTCTCCTCTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites