CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39400053|39400257
Strand +
CircType exon
Host Gene ENSG00000063322.12;
Algorism CIRI2;
Sequence CTGGGCACGCACCACCACACCTGGCTAATTTTTGAATTTTTTGCAGATAAGGGCTTTTGCTATGTTGCTCGGACTGGTCTTGAATTCCTGGGCTCAAGCCATCTGCCTGCCTGCACCTCCCAAAGTGATGGGATTACAGGCCTGGGCCACTGTGCCTGGCCCCAACATCTCCACTTCTGATCTCATTTTTCTGTTTTCTCACCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39400053|39400257 hsa-miR-383-5p 0 0 1
chr19:39400053|39400257 hsa-miR-383-3p 0 0 1
chr19:39400053|39400257 hsa-miR-135b-5p 0 0 1
chr19:39400053|39400257 hsa-miR-135b-3p 0 0 1
chr19:39400053|39400257 hsa-miR-539-5p 0 0 1
chr19:39400053|39400257 hsa-miR-539-3p 0 0 1
chr19:39400053|39400257 hsa-miR-570-5p 0 0 1
chr19:39400053|39400257 hsa-miR-570-3p 0 0 1
chr19:39400053|39400257 hsa-miR-575 0 0 1
chr19:39400053|39400257 hsa-miR-620 0 0 1
chr19:39400053|39400257 hsa-miR-675-5p 0 0 1
chr19:39400053|39400257 hsa-miR-675-3p 0 0 1
chr19:39400053|39400257 hsa-miR-938 0 0 1
chr19:39400053|39400257 hsa-miR-940 0 0 1
chr19:39400053|39400257 hsa-miR-663b 0 1 1
chr19:39400053|39400257 hsa-miR-1270 0 0 1
chr19:39400053|39400257 hsa-miR-548p 0 0 1
chr19:39400053|39400257 hsa-miR-1225-3p 0 0 1
chr19:39400053|39400257 hsa-miR-615-3p 0 0 1
chr19:39400053|39400257 hsa-miR-876-3p 0 0 1
chr19:39400053|39400257 hsa-miR-1233 0 0 1
chr19:39400053|39400257 hsa-miR-128 0 0 1
chr19:39400053|39400257 hsa-miR-323-5p 0 0 1
chr19:39400053|39400257 hsa-miR-135a 0 0 1
chr19:39400053|39400257 hsa-miR-129-3p 0 0 1
chr19:39400053|39400257 hsa-miR-1268a 1 0 0
chr19:39400053|39400257 hsa-miR-3197 1 0 0
chr19:39400053|39400257 hsa-miR-4269 0 1 0
chr19:39400053|39400257 hsa-miR-1268b 1 0 0
chr19:39400053|39400257 hsa-miR-4466 1 1 0
chr19:39400053|39400257 hsa-miR-3689c 0 1 0
chr19:39400053|39400257 hsa-miR-4496 0 1 0
chr19:39400053|39400257 hsa-miR-4673 0 1 0
chr19:39400053|39400257 hsa-miR-4683 1 0 0
chr19:39400053|39400257 hsa-miR-4692 0 1 0
chr19:39400053|39400257 hsa-miR-5693 0 1 0
chr19:39400053|39400257 hsa-miR-12114 1 0 0
chr19:39400053|39400257 hsa-miR-12115 1 1 0
chr19:39400053|39400257 hsa-miR-128-3p 0 1 0
chr19:39400053|39400257 hsa-miR-4433b-3p 1 0 0
chr19:39400053|39400257 hsa-miR-6840-3p 0 1 0
chr19:39400053|39400257 hsa-miR-1247-3p 1 1 0
chr19:39400053|39400257 hsa-miR-4433a-3p 1 1 0
chr19:39400053|39400257 hsa-miR-6825-5p 1 0 0
chr19:39400053|39400257 hsa-miR-6894-5p 1 0 0
chr19:39400053|39400257 hsa-miR-6857-5p 1 0 0
chr19:39400053|39400257 hsa-miR-1972 0 1 0
chr19:39400053|39400257 hsa-miR-6799-5p 1 1 0
chr19:39400053|39400257 hsa-miR-3622a-5p 0 1 0
chr19:39400053|39400257 hsa-miR-3934-5p 0 1 0
chr19:39400053|39400257 hsa-miR-1227-5p 1 1 0
chr19:39400053|39400257 hsa-miR-4786-5p 1 0 0
chr19:39400053|39400257 hsa-miR-6089 1 0 0
chr19:39400053|39400257 hsa-miR-3677-5p 0 1 0
chr19:39400053|39400257 hsa-miR-6806-5p 1 1 0
chr19:39400053|39400257 hsa-miR-6768-5p 1 0 0
chr19:39400053|39400257 hsa-miR-6732-5p 1 0 0
chr19:39400053|39400257 hsa-miR-6798-5p 1 0 0
chr19:39400053|39400257 hsa-miR-30b-3p 0 1 0
chr19:39400053|39400257 hsa-miR-6735-3p 0 1 0
chr19:39400053|39400257 hsa-miR-1226-5p 1 0 0
chr19:39400053|39400257 hsa-miR-4783-3p 1 0 0
chr19:39400053|39400257 hsa-miR-4640-5p 1 1 0
chr19:39400053|39400257 hsa-miR-6771-5p 1 0 0
chr19:39400053|39400257 hsa-miR-6717-5p 1 0 0
chr19:39400053|39400257 hsa-miR-3925-5p 1 1 0
chr19:39400053|39400257 hsa-miR-6895-5p 0 1 0
chr19:39400053|39400257 hsa-miR-3191-3p 1 0 0
chr19:39400053|39400257 hsa-miR-1911-3p 0 1 0
chr19:39400053|39400257 hsa-miR-216a-3p 0 1 0
chr19:39400053|39400257 hsa-miR-18a-5p 0 1 0
chr19:39400053|39400257 hsa-miR-27b-3p 0 1 0
chr19:39400053|39400257 hsa-miR-1233-5p 1 0 0
chr19:39400053|39400257 hsa-miR-1273h-5p 1 1 0
chr19:39400053|39400257 hsa-miR-3689b-3p 0 1 0
chr19:39400053|39400257 hsa-miR-6778-5p 1 1 0
chr19:39400053|39400257 hsa-miR-6893-5p 1 1 0
chr19:39400053|39400257 hsa-miR-6752-5p 0 1 0
chr19:39400053|39400257 hsa-miR-6851-5p 1 1 0
chr19:39400053|39400257 hsa-miR-6779-5p 0 1 0
chr19:39400053|39400257 hsa-miR-6780a-5p 0 1 0
chr19:39400053|39400257 hsa-miR-6808-5p 0 1 0
chr19:39400053|39400257 hsa-miR-328-5p 1 0 0
chr19:39400053|39400257 hsa-miR-3689a-3p 0 1 0
chr19:39400053|39400257 hsa-miR-6845-5p 0 1 0
chr19:39400053|39400257 hsa-miR-6511a-5p 0 1 0
chr19:39400053|39400257 hsa-miR-6511b-5p 0 1 0
chr19:39400053|39400257 hsa-miR-1199-5p 1 0 0
chr19:39400053|39400257 hsa-miR-6773-5p 1 1 0
chr19:39400053|39400257 hsa-miR-6766-5p 1 0 0
chr19:39400053|39400257 hsa-miR-7107-3p 0 1 0
chr19:39400053|39400257 hsa-miR-6762-5p 0 1 0
chr19:39400053|39400257 hsa-miR-769-3p 1 0 0
chr19:39400053|39400257 hsa-miR-6529-5p 1 1 0
chr19:39400053|39400257 hsa-miR-6715b-5p 0 1 0
chr19:39400053|39400257 hsa-miR-6838-5p 0 1 0
chr19:39400053|39400257 hsa-miR-129-1-3p 0 1 0
chr19:39400053|39400257 hsa-miR-129-2-3p 0 1 0
chr19:39400053|39400257 hsa-miR-892c-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:39400053|39400257
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence LGTHHHTWLIFEFFADKGFCYVARTGLEFLGSSHLPACTSQSDGITGLGHCAWPQHLHF
Nucleotide Sequence CTGGGCACGCACCACCACACCTGGCTAATTTTTGAATTTTTTGCAGATAAGGGCTTTTGCTATGTTGCTCGGACTGGTCTTGAATTCCTGGGCTCAAGCCATCTGCCTGCCTGCACCTCCCAAAGTGATGGGATTACAGGCCTGGGCCACTGTGCCTGGCCCCAACATCTCCACTTCTGA
CircID chr19:39400053|39400257
ORF Type ORF2
Protein Length 58
Nucleotide Length 174
Protein Sequence MNFLQIRAFAMLLGLVLNSWAQAICLPAPPKVMGLQAWATVPGPNISTSDLIFLFSHH
Nucleotide Sequence TTGAATTTTTTGCAGATAAGGGCTTTTGCTATGTTGCTCGGACTGGTCTTGAATTCCTGGGCTCAAGCCATCTGCCTGCCTGCACCTCCCAAAGTGATGGGATTACAGGCCTGGGCCACTGTGCCTGGCCCCAACATCTCCACTTCTGATCTCATTTTTCTGTTTTCTCACCAT
CircID chr19:39400053|39400257
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MSPGIQDQSEQHSKSPYLQKIQKLARCGGACP
Nucleotide Sequence TTGAGCCCAGGAATTCAAGACCAGTCCGAGCAACATAGCAAAAGCCCTTATCTGCAAAAAATTCAAAAATTAGCCAGGTGTGGTGGTGCGTGCCCA
CircID chr19:39400053|39400257
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MRSEVEMLGPGTVAQACNPITLGGAGRQMA
Nucleotide Sequence ATGAGATCAGAAGTGGAGATGTTGGGGCCAGGCACAGTGGCCCAGGCCTGTAATCCCATCACTTTGGGAGGTGCAGGCAGGCAGATGGCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab