CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39408009|39408344
Strand -
CircType exon
Host Gene ENSG00000128016.5;
Algorism CIRI2;
Sequence CTCCACCACCCCCTCGCGCTACAAGACTGAGCTATGTCGGACCTTCTCAGAGAGTGGGCGCTGCCGCTACGGGGCCAAGTGCCAGTTTGCCCATGGCCTGGGCGAGCTGCGCCAGGCCAATCGCCACCCCAAATACAAGACGGAACTCTGTCACAAGTTCTACCTCCAGGGCCGCTGCCCCTACGGCTCTCGCTGCCACTTCATCCACAACCCTAGCGAAGACCTGGCGGCCCCGGGCCACCCTCCTGTGCTTCGCCAGAGCATCAGCTTCTCCGGCCTGCCCTCTGGCCGCCGGACCTCACCACCACCACCAGGCCTGGCCGGCCCTTCCCTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39408009|39408344 hsa-let-7b-5p 0 0 1
chr19:39408009|39408344 hsa-let-7b-3p 0 0 1
chr19:39408009|39408344 hsa-let-7c-5p 0 0 1
chr19:39408009|39408344 hsa-let-7c-3p 0 0 1
chr19:39408009|39408344 hsa-let-7d-5p 0 0 1
chr19:39408009|39408344 hsa-let-7d-3p 0 0 1
chr19:39408009|39408344 hsa-let-7e-5p 0 0 1
chr19:39408009|39408344 hsa-let-7e-3p 0 0 1
chr19:39408009|39408344 hsa-miR-98-5p 0 0 1
chr19:39408009|39408344 hsa-miR-98-3p 0 0 1
chr19:39408009|39408344 hsa-let-7g-5p 0 0 1
chr19:39408009|39408344 hsa-let-7g-3p 0 0 1
chr19:39408009|39408344 hsa-let-7i-5p 0 0 1
chr19:39408009|39408344 hsa-let-7i-3p 0 0 1
chr19:39408009|39408344 hsa-miR-328-5p 0 0 1
chr19:39408009|39408344 hsa-miR-328-3p 0 0 1
chr19:39408009|39408344 hsa-miR-493-5p 0 0 1
chr19:39408009|39408344 hsa-miR-493-3p 0 0 1
chr19:39408009|39408344 hsa-miR-573 0 0 1
chr19:39408009|39408344 hsa-miR-608 0 1 1
chr19:39408009|39408344 hsa-miR-622 0 0 1
chr19:39408009|39408344 hsa-miR-643 0 0 1
chr19:39408009|39408344 hsa-miR-758-5p 0 0 1
chr19:39408009|39408344 hsa-miR-758-3p 0 0 1
chr19:39408009|39408344 hsa-miR-663b 0 1 1
chr19:39408009|39408344 hsa-miR-1291 0 1 1
chr19:39408009|39408344 hsa-miR-1293 0 1 1
chr19:39408009|39408344 hsa-miR-1294 0 0 1
chr19:39408009|39408344 hsa-miR-1253 0 0 1
chr19:39408009|39408344 hsa-miR-1255a 0 0 1
chr19:39408009|39408344 hsa-miR-486-3p 0 0 1
chr19:39408009|39408344 hsa-miR-885-3p 0 1 1
chr19:39408009|39408344 hsa-miR-296-3p 0 1 1
chr19:39408009|39408344 hsa-miR-876-3p 0 0 1
chr19:39408009|39408344 hsa-miR-342-5p 0 0 1
chr19:39408009|39408344 hsa-miR-542-3p 0 0 1
chr19:39408009|39408344 hsa-miR-323-5p 0 0 1
chr19:39408009|39408344 hsa-miR-1255b 0 0 1
chr19:39408009|39408344 hsa-let-7a 0 0 1
chr19:39408009|39408344 hsa-let-7f 0 0 1
chr19:39408009|39408344 hsa-miR-1300 0 0 1
chr19:39408009|39408344 hsa-miR-639 1 0 0
chr19:39408009|39408344 hsa-miR-650 1 0 0
chr19:39408009|39408344 hsa-miR-663a 1 0 0
chr19:39408009|39408344 hsa-miR-658 1 0 0
chr19:39408009|39408344 hsa-miR-762 1 0 0
chr19:39408009|39408344 hsa-miR-1268a 1 0 0
chr19:39408009|39408344 hsa-miR-1538 0 1 0
chr19:39408009|39408344 hsa-miR-2861 0 1 0
chr19:39408009|39408344 hsa-miR-3141 0 1 0
chr19:39408009|39408344 hsa-miR-3188 1 0 0
chr19:39408009|39408344 hsa-miR-3196 1 0 0
chr19:39408009|39408344 hsa-miR-3907 1 0 0
chr19:39408009|39408344 hsa-miR-3921 0 1 0
chr19:39408009|39408344 hsa-miR-1268b 1 0 0
chr19:39408009|39408344 hsa-miR-4458 0 1 0
chr19:39408009|39408344 hsa-miR-4467 1 0 0
chr19:39408009|39408344 hsa-miR-4498 1 0 0
chr19:39408009|39408344 hsa-miR-1587 1 0 0
chr19:39408009|39408344 hsa-miR-3960 0 1 0
chr19:39408009|39408344 hsa-miR-4651 0 1 0
chr19:39408009|39408344 hsa-miR-4673 1 0 0
chr19:39408009|39408344 hsa-miR-4682 1 0 0
chr19:39408009|39408344 hsa-miR-4688 0 1 0
chr19:39408009|39408344 hsa-miR-4689 1 0 0
chr19:39408009|39408344 hsa-miR-4706 1 0 0
chr19:39408009|39408344 hsa-miR-4710 0 1 0
chr19:39408009|39408344 hsa-miR-4739 1 0 0
chr19:39408009|39408344 hsa-miR-4741 1 0 0
chr19:39408009|39408344 hsa-miR-5090 1 0 0
chr19:39408009|39408344 hsa-miR-5572 0 1 0
chr19:39408009|39408344 hsa-miR-6090 1 0 0
chr19:39408009|39408344 hsa-miR-6133 1 0 0
chr19:39408009|39408344 hsa-miR-6860 1 0 0
chr19:39408009|39408344 hsa-miR-7706 1 0 0
chr19:39408009|39408344 hsa-miR-8072 0 1 0
chr19:39408009|39408344 hsa-miR-8075 1 0 0
chr19:39408009|39408344 hsa-miR-12119 1 0 0
chr19:39408009|39408344 hsa-miR-135a-3p 1 0 0
chr19:39408009|39408344 hsa-miR-370-3p 1 0 0
chr19:39408009|39408344 hsa-miR-323a-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6747-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6825-5p 1 0 0
chr19:39408009|39408344 hsa-miR-1972 0 1 0
chr19:39408009|39408344 hsa-miR-6854-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6799-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6728-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6089 1 0 0
chr19:39408009|39408344 hsa-miR-6757-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6880-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6746-5p 1 0 0
chr19:39408009|39408344 hsa-miR-4722-5p 1 0 0
chr19:39408009|39408344 hsa-miR-3677-5p 1 0 0
chr19:39408009|39408344 hsa-miR-4755-3p 0 1 0
chr19:39408009|39408344 hsa-miR-6820-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6727-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6721-5p 1 0 0
chr19:39408009|39408344 hsa-miR-874-3p 1 0 0
chr19:39408009|39408344 hsa-miR-6742-5p 1 0 0
chr19:39408009|39408344 hsa-miR-3180-3p 0 1 0
chr19:39408009|39408344 hsa-miR-6796-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6732-5p 0 1 0
chr19:39408009|39408344 hsa-miR-3190-3p 1 0 0
chr19:39408009|39408344 hsa-miR-23a-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6782-5p 1 0 0
chr19:39408009|39408344 hsa-miR-7855-5p 0 1 0
chr19:39408009|39408344 hsa-miR-5006-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6786-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6835-5p 0 1 0
chr19:39408009|39408344 hsa-miR-5088-5p 1 0 0
chr19:39408009|39408344 hsa-miR-1226-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6784-5p 0 1 0
chr19:39408009|39408344 hsa-miR-4640-5p 0 1 0
chr19:39408009|39408344 hsa-miR-3614-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6823-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6749-5p 0 1 0
chr19:39408009|39408344 hsa-miR-4743-5p 1 0 0
chr19:39408009|39408344 hsa-miR-149-3p 1 0 0
chr19:39408009|39408344 hsa-miR-193a-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6824-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6781-5p 0 1 0
chr19:39408009|39408344 hsa-miR-593-3p 1 0 0
chr19:39408009|39408344 hsa-let-7f-5p 0 1 0
chr19:39408009|39408344 hsa-let-7a-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6801-5p 0 1 0
chr19:39408009|39408344 hsa-miR-4797-5p 0 1 0
chr19:39408009|39408344 hsa-miR-10400-5p 0 1 0
chr19:39408009|39408344 hsa-miR-1207-5p 1 0 0
chr19:39408009|39408344 hsa-miR-4763-3p 1 0 0
chr19:39408009|39408344 hsa-miR-6812-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6816-5p 1 0 0
chr19:39408009|39408344 hsa-miR-1343-5p 1 0 0
chr19:39408009|39408344 hsa-miR-5001-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6737-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6743-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6752-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6754-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6756-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6803-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6813-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6815-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6819-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6842-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6851-5p 0 1 0
chr19:39408009|39408344 hsa-miR-7107-5p 1 0 0
chr19:39408009|39408344 hsa-miR-7110-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6751-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6779-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6797-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6879-5p 1 0 0
chr19:39408009|39408344 hsa-miR-3620-5p 1 0 0
chr19:39408009|39408344 hsa-miR-4728-5p 1 0 0
chr19:39408009|39408344 hsa-miR-5196-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6780b-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6836-5p 1 0 0
chr19:39408009|39408344 hsa-miR-10396b-5p 1 0 0
chr19:39408009|39408344 hsa-miR-449c-5p 1 0 0
chr19:39408009|39408344 hsa-miR-4632-5p 0 1 0
chr19:39408009|39408344 hsa-miR-4685-5p 1 0 0
chr19:39408009|39408344 hsa-miR-4725-3p 1 0 0
chr19:39408009|39408344 hsa-miR-4726-5p 0 1 0
chr19:39408009|39408344 hsa-miR-4745-3p 0 1 0
chr19:39408009|39408344 hsa-miR-6846-5p 1 0 0
chr19:39408009|39408344 hsa-miR-6858-5p 1 0 0
chr19:39408009|39408344 hsa-miR-4436b-3p 0 1 0
chr19:39408009|39408344 hsa-miR-6831-5p 0 1 0
chr19:39408009|39408344 hsa-miR-939-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6855-5p 1 0 0
chr19:39408009|39408344 hsa-miR-4646-5p 1 0 0
chr19:39408009|39408344 hsa-miR-4747-5p 0 1 0
chr19:39408009|39408344 hsa-miR-6785-5p 1 0 0
chr19:39408009|39408344 hsa-miR-10392-3p 1 0 0
chr19:39408009|39408344 hsa-miR-4653-5p 0 1 0
chr19:39408009|39408344 hsa-miR-3927-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:39408009|39408344
ORF Type ORF1
Protein Length 60
Nucleotide Length 183
Protein Sequence MSDLLREWALPLRGQVPVCPWPGRAAPGQSPPQIQDGTLSQVLPPGPLPLRLSLPLHPQP
Nucleotide Sequence ATGTCGGACCTTCTCAGAGAGTGGGCGCTGCCGCTACGGGGCCAAGTGCCAGTTTGCCCATGGCCTGGGCGAGCTGCGCCAGGCCAATCGCCACCCCAAATACAAGACGGAACTCTGTCACAAGTTCTACCTCCAGGGCCGCTGCCCCTACGGCTCTCGCTGCCACTTCATCCACAACCCTAG
CircID chr19:39408009|39408344
ORF Type ORF2
Protein Length 79
Nucleotide Length 237
Protein Sequence MGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSL
Nucleotide Sequence CTGGGCGAGCTGCGCCAGGCCAATCGCCACCCCAAATACAAGACGGAACTCTGTCACAAGTTCTACCTCCAGGGCCGCTGCCCCTACGGCTCTCGCTGCCACTTCATCCACAACCCTAGCGAAGACCTGGCGGCCCCGGGCCACCCTCCTGTGCTTCGCCAGAGCATCAGCTTCTCCGGCCTGCCCTCTGGCCGCCGGACCTCACCACCACCACCAGGCCTGGCCGGCCCTTCCCTG
CircID chr19:39408009|39408344
ORF Type ORF3
Protein Length 103
Nucleotide Length 309
Protein Sequence MSYVGPSQRVGAAATGPSASLPMAWASCARPIATPNTRRNSVTSSTSRAAAPTALAATSSTTLAKTWRPRATLLCFARASASPACPLAAGPHHHHQAWPALPC
Nucleotide Sequence CTGAGCTATGTCGGACCTTCTCAGAGAGTGGGCGCTGCCGCTACGGGGCCAAGTGCCAGTTTGCCCATGGCCTGGGCGAGCTGCGCCAGGCCAATCGCCACCCCAAATACAAGACGGAACTCTGTCACAAGTTCTACCTCCAGGGCCGCTGCCCCTACGGCTCTCGCTGCCACTTCATCCACAACCCTAGCGAAGACCTGGCGGCCCCGGGCCACCCTCCTGTGCTTCGCCAGAGCATCAGCTTCTCCGGCCTGCCCTCTGGCCGCCGGACCTCACCACCACCACCAGGCCTGGCCGGCCCTTCCCTGT
CircID chr19:39408009|39408344
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MMLWRSTGGWPGAARSSLGLWMKWQREP
Nucleotide Sequence CTGATGCTCTGGCGAAGCACAGGAGGGTGGCCCGGGGCCGCCAGGTCTTCGCTAGGGTTGTGGATGAAGTGGCAGCGAGAGCCGTAG
CircID chr19:39408009|39408344
ORF Type ORF5
Protein Length 70
Nucleotide Length 213
Protein Sequence MAKHRRVARGRQVFARVVDEVAARAVGAAALEVELVTEFRLVFGVAIGLAQLAQAMGKLALGPVAAAPTL
Nucleotide Sequence CTGGCGAAGCACAGGAGGGTGGCCCGGGGCCGCCAGGTCTTCGCTAGGGTTGTGGATGAAGTGGCAGCGAGAGCCGTAGGGGCAGCGGCCCTGGAGGTAGAACTTGTGACAGAGTTCCGTCTTGTATTTGGGGTGGCGATTGGCCTGGCGCAGCTCGCCCAGGCCATGGGCAAACTGGCACTTGGCCCCGTAGCGGCAGCGCCCACTCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab