CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39408079|39408339
Strand -
CircType exon
Host Gene ENSG00000128016.5;
Algorism CIRI2;
Sequence GGGGCCAAGTGCCAGTTTGCCCATGGCCTGGGCGAGCTGCGCCAGGCCAATCGCCACCCCAAATACAAGACGGAACTCTGTCACAAGTTCTACCTCCAGGGCCGCTGCCCCTACGGCTCTCGCTGCCACTTCATCCACAACCCTAGCGAAGACCTGGCGGCCCCGGGCCACCCTCCTGTGCTTCGCCAGAGCATCAGCTTCTCCGGCCTGCCCTCTGGCCGCCGGACCTCACCACCACCACCAGGCCTGGCCGGCCCTTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39408079|39408339 hsa-let-7b-5p 0 0 1
chr19:39408079|39408339 hsa-let-7b-3p 0 0 1
chr19:39408079|39408339 hsa-let-7c-5p 0 0 1
chr19:39408079|39408339 hsa-let-7c-3p 0 0 1
chr19:39408079|39408339 hsa-let-7d-5p 0 0 1
chr19:39408079|39408339 hsa-let-7d-3p 0 0 1
chr19:39408079|39408339 hsa-let-7e-5p 0 0 1
chr19:39408079|39408339 hsa-let-7e-3p 0 0 1
chr19:39408079|39408339 hsa-miR-98-5p 0 0 1
chr19:39408079|39408339 hsa-miR-98-3p 0 0 1
chr19:39408079|39408339 hsa-let-7g-5p 0 0 1
chr19:39408079|39408339 hsa-let-7g-3p 0 0 1
chr19:39408079|39408339 hsa-let-7i-5p 0 0 1
chr19:39408079|39408339 hsa-let-7i-3p 0 0 1
chr19:39408079|39408339 hsa-miR-328-5p 0 0 1
chr19:39408079|39408339 hsa-miR-328-3p 0 0 1
chr19:39408079|39408339 hsa-miR-573 0 0 1
chr19:39408079|39408339 hsa-miR-608 1 0 1
chr19:39408079|39408339 hsa-miR-643 0 0 1
chr19:39408079|39408339 hsa-miR-758-5p 0 0 1
chr19:39408079|39408339 hsa-miR-758-3p 0 0 1
chr19:39408079|39408339 hsa-miR-663b 0 0 1
chr19:39408079|39408339 hsa-miR-1291 0 0 1
chr19:39408079|39408339 hsa-miR-1294 0 0 1
chr19:39408079|39408339 hsa-miR-1255a 0 0 1
chr19:39408079|39408339 hsa-miR-486-3p 0 0 1
chr19:39408079|39408339 hsa-miR-885-3p 1 0 1
chr19:39408079|39408339 hsa-miR-296-3p 1 0 1
chr19:39408079|39408339 hsa-miR-876-3p 0 0 1
chr19:39408079|39408339 hsa-miR-342-5p 0 0 1
chr19:39408079|39408339 hsa-miR-542-3p 0 0 1
chr19:39408079|39408339 hsa-miR-323-5p 0 0 1
chr19:39408079|39408339 hsa-miR-1255b 0 0 1
chr19:39408079|39408339 hsa-let-7a 0 0 1
chr19:39408079|39408339 hsa-let-7f 0 0 1
chr19:39408079|39408339 hsa-miR-639 1 0 0
chr19:39408079|39408339 hsa-miR-762 1 0 0
chr19:39408079|39408339 hsa-miR-1268a 1 0 0
chr19:39408079|39408339 hsa-miR-2861 1 0 0
chr19:39408079|39408339 hsa-miR-3141 1 0 0
chr19:39408079|39408339 hsa-miR-3188 1 0 0
chr19:39408079|39408339 hsa-miR-3196 1 0 0
chr19:39408079|39408339 hsa-miR-3907 1 0 0
chr19:39408079|39408339 hsa-miR-1268b 1 0 0
chr19:39408079|39408339 hsa-miR-4467 1 0 0
chr19:39408079|39408339 hsa-miR-4498 1 0 0
chr19:39408079|39408339 hsa-miR-3960 1 0 0
chr19:39408079|39408339 hsa-miR-4651 1 0 0
chr19:39408079|39408339 hsa-miR-4682 1 0 0
chr19:39408079|39408339 hsa-miR-4688 1 0 0
chr19:39408079|39408339 hsa-miR-4706 1 0 0
chr19:39408079|39408339 hsa-miR-4741 1 0 0
chr19:39408079|39408339 hsa-miR-5090 1 0 0
chr19:39408079|39408339 hsa-miR-5572 1 0 0
chr19:39408079|39408339 hsa-miR-6090 1 0 0
chr19:39408079|39408339 hsa-miR-6860 1 0 0
chr19:39408079|39408339 hsa-miR-8072 1 0 0
chr19:39408079|39408339 hsa-miR-8075 1 0 0
chr19:39408079|39408339 hsa-miR-138-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6747-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6089 1 0 0
chr19:39408079|39408339 hsa-miR-6880-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6746-5p 1 0 0
chr19:39408079|39408339 hsa-miR-4722-5p 1 0 0
chr19:39408079|39408339 hsa-miR-3677-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6727-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6721-5p 1 0 0
chr19:39408079|39408339 hsa-miR-874-3p 1 0 0
chr19:39408079|39408339 hsa-miR-6742-5p 1 0 0
chr19:39408079|39408339 hsa-miR-3180-3p 1 0 0
chr19:39408079|39408339 hsa-miR-6796-5p 1 0 0
chr19:39408079|39408339 hsa-miR-23a-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6782-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6786-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6835-5p 1 0 0
chr19:39408079|39408339 hsa-miR-1226-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6823-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6749-5p 1 0 0
chr19:39408079|39408339 hsa-miR-4743-5p 1 0 0
chr19:39408079|39408339 hsa-miR-149-3p 1 0 0
chr19:39408079|39408339 hsa-miR-193a-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6824-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6781-5p 1 0 0
chr19:39408079|39408339 hsa-miR-593-3p 1 0 0
chr19:39408079|39408339 hsa-miR-10400-5p 1 0 0
chr19:39408079|39408339 hsa-miR-1207-5p 1 0 0
chr19:39408079|39408339 hsa-miR-4763-3p 1 0 0
chr19:39408079|39408339 hsa-miR-6812-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6816-5p 1 0 0
chr19:39408079|39408339 hsa-miR-1343-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6737-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6743-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6752-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6756-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6803-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6813-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6819-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6842-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6851-5p 1 0 0
chr19:39408079|39408339 hsa-miR-7107-5p 1 0 0
chr19:39408079|39408339 hsa-miR-7110-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6751-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6797-5p 1 0 0
chr19:39408079|39408339 hsa-miR-3620-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6836-5p 1 0 0
chr19:39408079|39408339 hsa-miR-449c-5p 1 0 0
chr19:39408079|39408339 hsa-miR-4632-5p 1 0 0
chr19:39408079|39408339 hsa-miR-4685-5p 1 0 0
chr19:39408079|39408339 hsa-miR-4726-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6846-5p 1 0 0
chr19:39408079|39408339 hsa-miR-6855-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:39408079|39408339
ORF Type ORF1
Protein Length 78
Nucleotide Length 234
Protein Sequence MGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPS
Nucleotide Sequence CTGGGCGAGCTGCGCCAGGCCAATCGCCACCCCAAATACAAGACGGAACTCTGTCACAAGTTCTACCTCCAGGGCCGCTGCCCCTACGGCTCTCGCTGCCACTTCATCCACAACCCTAGCGAAGACCTGGCGGCCCCGGGCCACCCTCCTGTGCTTCGCCAGAGCATCAGCTTCTCCGGCCTGCCCTCTGGCCGCCGGACCTCACCACCACCACCAGGCCTGGCCGGCCCTTCC
CircID chr19:39408079|39408339
ORF Type ORF2
Protein Length 81
Nucleotide Length 243
Protein Sequence MPMAWASCARPIATPNTRRNSVTSSTSRAAAPTALAATSSTTLAKTWRPRATLLCFARASASPACPLAAGPHHHHQAWPAL
Nucleotide Sequence TTGCCCATGGCCTGGGCGAGCTGCGCCAGGCCAATCGCCACCCCAAATACAAGACGGAACTCTGTCACAAGTTCTACCTCCAGGGCCGCTGCCCCTACGGCTCTCGCTGCCACTTCATCCACAACCCTAGCGAAGACCTGGCGGCCCCGGGCCACCCTCCTGTGCTTCGCCAGAGCATCAGCTTCTCCGGCCTGCCCTCTGGCCGCCGGACCTCACCACCACCACCAGGCCTGGCCGGCCCTT
CircID chr19:39408079|39408339
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MAKHRRVARGRQVFARVVDEVAARAVGAAALEVELVTEFRLVFGVAIGLAQLAQAMGKLALGP
Nucleotide Sequence CTGGCGAAGCACAGGAGGGTGGCCCGGGGCCGCCAGGTCTTCGCTAGGGTTGTGGATGAAGTGGCAGCGAGAGCCGTAGGGGCAGCGGCCCTGGAGGTAGAACTTGTGACAGAGTTCCGTCTTGTATTTGGGGTGGCGATTGGCCTGGCGCAGCTCGCCCAGGCCATGGGCAAACTGGCACTTGGCCCC
CircID chr19:39408079|39408339
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MMLWRSTGGWPGAARSSLGLWMKWQREP
Nucleotide Sequence CTGATGCTCTGGCGAAGCACAGGAGGGTGGCCCGGGGCCGCCAGGTCTTCGCTAGGGTTGTGGATGAAGTGGCAGCGAGAGCCGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab