CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39408531|39408683
Strand -
CircType exon
Host Gene ENSG00000128016.5;
Algorism CIRI2;
Sequence CCCCTCTGTACAGTCCCTGGGATCCGACCCTGATGAATATGCCAGCAGCGGCAGCAGCCTGGGGGGCTCTGACTCTCCCGTCTTCGAGGCGGGAGTTTTTGCACCACCCCAGCCCGTGGCAGCCCCCCGGCGACTCCCCATCTTCAATCGCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39408531|39408683 hsa-miR-19a-5p 0 0 1
chr19:39408531|39408683 hsa-miR-19a-3p 0 0 1
chr19:39408531|39408683 hsa-miR-608 1 1 1
chr19:39408531|39408683 hsa-miR-939-5p 0 0 1
chr19:39408531|39408683 hsa-miR-939-3p 0 0 1
chr19:39408531|39408683 hsa-miR-1293 0 1 1
chr19:39408531|39408683 hsa-miR-1225-3p 0 1 1
chr19:39408531|39408683 hsa-miR-127-3p 0 0 1
chr19:39408531|39408683 hsa-miR-361-3p 0 1 1
chr19:39408531|39408683 hsa-miR-483-5p 0 1 1
chr19:39408531|39408683 hsa-miR-342-5p 0 0 1
chr19:39408531|39408683 hsa-miR-886-5p 0 0 1
chr19:39408531|39408683 hsa-miR-664 0 0 1
chr19:39408531|39408683 hsa-miR-19b 0 0 1
chr19:39408531|39408683 hsa-miR-638 1 0 0
chr19:39408531|39408683 hsa-miR-762 0 1 0
chr19:39408531|39408683 hsa-miR-4327 1 0 0
chr19:39408531|39408683 hsa-miR-3943 0 1 0
chr19:39408531|39408683 hsa-miR-4498 0 1 0
chr19:39408531|39408683 hsa-miR-4505 0 1 0
chr19:39408531|39408683 hsa-miR-4507 1 0 0
chr19:39408531|39408683 hsa-miR-4647 0 1 0
chr19:39408531|39408683 hsa-miR-4706 1 0 0
chr19:39408531|39408683 hsa-miR-4734 1 0 0
chr19:39408531|39408683 hsa-miR-4741 0 1 0
chr19:39408531|39408683 hsa-miR-5192 0 1 0
chr19:39408531|39408683 hsa-miR-5787 0 1 0
chr19:39408531|39408683 hsa-miR-8052 0 1 0
chr19:39408531|39408683 hsa-miR-8075 1 0 0
chr19:39408531|39408683 hsa-miR-12121 0 1 0
chr19:39408531|39408683 hsa-miR-211-3p 0 1 0
chr19:39408531|39408683 hsa-miR-370-3p 1 0 0
chr19:39408531|39408683 hsa-miR-3150a-3p 0 1 0
chr19:39408531|39408683 hsa-miR-3692-5p 1 0 0
chr19:39408531|39408683 hsa-miR-6762-3p 0 1 0
chr19:39408531|39408683 hsa-miR-6806-5p 1 0 0
chr19:39408531|39408683 hsa-miR-6782-5p 1 0 0
chr19:39408531|39408683 hsa-miR-6786-5p 1 0 0
chr19:39408531|39408683 hsa-miR-296-3p 1 0 0
chr19:39408531|39408683 hsa-miR-6823-5p 1 0 0
chr19:39408531|39408683 hsa-miR-6789-5p 1 0 0
chr19:39408531|39408683 hsa-miR-4746-5p 1 0 0
chr19:39408531|39408683 hsa-miR-2277-5p 1 0 0
chr19:39408531|39408683 hsa-miR-4763-3p 1 0 0
chr19:39408531|39408683 hsa-miR-1343-5p 1 0 0
chr19:39408531|39408683 hsa-miR-5001-5p 1 0 0
chr19:39408531|39408683 hsa-miR-6737-5p 0 1 0
chr19:39408531|39408683 hsa-miR-6819-5p 0 1 0
chr19:39408531|39408683 hsa-miR-6763-5p 1 1 0
chr19:39408531|39408683 hsa-miR-3620-5p 1 1 0
chr19:39408531|39408683 hsa-miR-328-5p 1 1 0
chr19:39408531|39408683 hsa-miR-6846-5p 0 1 0
chr19:39408531|39408683 hsa-miR-6848-5p 1 1 0
chr19:39408531|39408683 hsa-miR-6889-5p 1 0 0
chr19:39408531|39408683 hsa-miR-1266-5p 0 1 0
chr19:39408531|39408683 hsa-miR-10396a-3p 1 0 0
chr19:39408531|39408683 hsa-miR-10396b-3p 1 0 0
chr19:39408531|39408683 hsa-miR-6731-5p 0 1 0
chr19:39408531|39408683 hsa-miR-6764-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:39408531|39408683
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MGSDPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNR
Nucleotide Sequence CTGGGATCCGACCCTGATGAATATGCCAGCAGCGGCAGCAGCCTGGGGGGCTCTGACTCTCCCGTCTTCGAGGCGGGAGTTTTTGCACCACCCCAGCCCGTGGCAGCCCCCCGGCGACTCCCCATCTTCAATCGC
CircID chr19:39408531|39408683
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MYSPWDPTLMNMPAAAAAWGALTLPSSRREFLHHPSPWQPPGDSPSSIA
Nucleotide Sequence CTGTACAGTCCCTGGGATCCGACCCTGATGAATATGCCAGCAGCGGCAGCAGCCTGGGGGGCTCTGACTCTCCCGTCTTCGAGGCGGGAGTTTTTGCACCACCCCAGCCCGTGGCAGCCCCCCGGCGACTCCCCATCTTCAATCGCA
CircID chr19:39408531|39408683
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MRLKMGSRRGAATGWGGAKTPASKTGESEPPRLLPLLAYSSGSDPRDCTEG
Nucleotide Sequence ATGCGATTGAAGATGGGGAGTCGCCGGGGGGCTGCCACGGGCTGGGGTGGTGCAAAAACTCCCGCCTCGAAGACGGGAGAGTCAGAGCCCCCCAGGCTGCTGCCGCTGCTGGCATATTCATCAGGGTCGGATCCCAGGGACTGTACAGAGGGG
CircID chr19:39408531|39408683
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MPRAGVVQKLPPRRRESQSPPGCCRCWHIHQGRIPGTVQR
Nucleotide Sequence CTGCCACGGGCTGGGGTGGTGCAAAAACTCCCGCCTCGAAGACGGGAGAGTCAGAGCCCCCCAGGCTGCTGCCGCTGCTGGCATATTCATCAGGGTCGGATCCCAGGGACTGTACAGAGG
CircID chr19:39408531|39408683
ORF Type ORF5
Protein Length 37
Nucleotide Length 111
Protein Sequence MGWCKNSRLEDGRVRAPQAAAAAGIFIRVGSQGLYRG
Nucleotide Sequence CTGGGGTGGTGCAAAAACTCCCGCCTCGAAGACGGGAGAGTCAGAGCCCCCCAGGCTGCTGCCGCTGCTGGCATATTCATCAGGGTCGGATCCCAGGGACTGTACAGAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab