CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39453360|39453521
Strand +
CircType exon
Host Gene ENSG00000196235.12;
Algorism CIRI2;
Sequence CAGCCTCGTCCAGAATGAAGCCTCCATGGCGGGGTTTCTTGGGGGGTCGGTCATCATCTTCTTCCTCCTCTTCCTCATCGTATTCCTCCTCCTCTTCCTCCTCCTCTTCGTCCTCAGGCTCTTCTTCTTTCTCACTGCCCGCTGCACTCCGCCGCTCTTCGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39453360|39453521 hsa-miR-34a-5p 0 0 1
chr19:39453360|39453521 hsa-miR-34a-3p 0 0 1
chr19:39453360|39453521 hsa-miR-422a 0 0 1
chr19:39453360|39453521 hsa-miR-449a 0 0 1
chr19:39453360|39453521 hsa-miR-539-5p 0 0 1
chr19:39453360|39453521 hsa-miR-539-3p 0 0 1
chr19:39453360|39453521 hsa-miR-650 0 0 1
chr19:39453360|39453521 hsa-miR-449b-5p 0 0 1
chr19:39453360|39453521 hsa-miR-449b-3p 0 0 1
chr19:39453360|39453521 hsa-miR-1298-5p 0 0 1
chr19:39453360|39453521 hsa-miR-1298-3p 0 0 1
chr19:39453360|39453521 hsa-miR-765 1 0 1
chr19:39453360|39453521 hsa-miR-1299 0 0 1
chr19:39453360|39453521 hsa-miR-1272 0 0 1
chr19:39453360|39453521 hsa-miR-1224-5p 1 0 1
chr19:39453360|39453521 hsa-miR-485-5p 0 0 1
chr19:39453360|39453521 hsa-miR-34c-5p 0 0 1
chr19:39453360|39453521 hsa-miR-378 0 0 1
chr19:39453360|39453521 hsa-miR-516b 0 0 1
chr19:39453360|39453521 hsa-miR-184 1 0 0
chr19:39453360|39453521 hsa-miR-663a 1 0 0
chr19:39453360|39453521 hsa-miR-658 1 0 0
chr19:39453360|39453521 hsa-miR-940 1 0 0
chr19:39453360|39453521 hsa-miR-1253 1 0 0
chr19:39453360|39453521 hsa-miR-2110 1 0 0
chr19:39453360|39453521 hsa-miR-2861 1 0 0
chr19:39453360|39453521 hsa-miR-3125 1 0 0
chr19:39453360|39453521 hsa-miR-3132 1 0 0
chr19:39453360|39453521 hsa-miR-3138 1 0 0
chr19:39453360|39453521 hsa-miR-3141 1 0 0
chr19:39453360|39453521 hsa-miR-3153 1 0 0
chr19:39453360|39453521 hsa-miR-3154 1 0 0
chr19:39453360|39453521 hsa-miR-3174 1 0 0
chr19:39453360|39453521 hsa-miR-3188 1 0 0
chr19:39453360|39453521 hsa-miR-4298 1 0 0
chr19:39453360|39453521 hsa-miR-4321 1 0 0
chr19:39453360|39453521 hsa-miR-4271 1 0 0
chr19:39453360|39453521 hsa-miR-3621 1 0 0
chr19:39453360|39453521 hsa-miR-3662 1 0 0
chr19:39453360|39453521 hsa-miR-3916 1 0 0
chr19:39453360|39453521 hsa-miR-4451 1 0 0
chr19:39453360|39453521 hsa-miR-4467 1 0 0
chr19:39453360|39453521 hsa-miR-2392 1 0 0
chr19:39453360|39453521 hsa-miR-4510 1 0 0
chr19:39453360|39453521 hsa-miR-4516 1 0 0
chr19:39453360|39453521 hsa-miR-3960 1 0 0
chr19:39453360|39453521 hsa-miR-4644 1 0 0
chr19:39453360|39453521 hsa-miR-4656 1 0 0
chr19:39453360|39453521 hsa-miR-4688 1 0 0
chr19:39453360|39453521 hsa-miR-4689 1 0 0
chr19:39453360|39453521 hsa-miR-4706 1 0 0
chr19:39453360|39453521 hsa-miR-4710 1 0 0
chr19:39453360|39453521 hsa-miR-4734 1 0 0
chr19:39453360|39453521 hsa-miR-4739 1 0 0
chr19:39453360|39453521 hsa-miR-5190 1 0 0
chr19:39453360|39453521 hsa-miR-5698 1 0 0
chr19:39453360|39453521 hsa-miR-5739 1 0 0
chr19:39453360|39453521 hsa-miR-5787 1 0 0
chr19:39453360|39453521 hsa-miR-6077 1 0 0
chr19:39453360|39453521 hsa-miR-6124 1 0 0
chr19:39453360|39453521 hsa-miR-6127 1 0 0
chr19:39453360|39453521 hsa-miR-6130 1 0 0
chr19:39453360|39453521 hsa-miR-6133 1 0 0
chr19:39453360|39453521 hsa-miR-6165 1 0 0
chr19:39453360|39453521 hsa-miR-6745 1 0 0
chr19:39453360|39453521 hsa-miR-8072 1 0 0
chr19:39453360|39453521 hsa-miR-8085 1 0 0
chr19:39453360|39453521 hsa-miR-8089 1 0 0
chr19:39453360|39453521 hsa-miR-9500 1 0 0
chr19:39453360|39453521 hsa-miR-12114 1 0 0
chr19:39453360|39453521 hsa-miR-12118 1 0 0
chr19:39453360|39453521 hsa-miR-12119 1 0 0
chr19:39453360|39453521 hsa-miR-4433b-3p 1 0 0
chr19:39453360|39453521 hsa-miR-504-3p 1 0 0
chr19:39453360|39453521 hsa-miR-6765-5p 1 0 0
chr19:39453360|39453521 hsa-miR-7106-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6825-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6894-5p 1 0 0
chr19:39453360|39453521 hsa-miR-25-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6799-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6510-5p 1 0 0
chr19:39453360|39453521 hsa-miR-8071 1 0 0
chr19:39453360|39453521 hsa-miR-766-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6833-5p 1 0 0
chr19:39453360|39453521 hsa-miR-5187-5p 1 0 0
chr19:39453360|39453521 hsa-miR-7114-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6873-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6880-5p 1 0 0
chr19:39453360|39453521 hsa-miR-7847-3p 1 0 0
chr19:39453360|39453521 hsa-miR-4695-5p 1 0 0
chr19:39453360|39453521 hsa-miR-4709-3p 1 0 0
chr19:39453360|39453521 hsa-miR-4722-5p 1 0 0
chr19:39453360|39453521 hsa-miR-7154-3p 1 0 0
chr19:39453360|39453521 hsa-miR-6820-5p 1 0 0
chr19:39453360|39453521 hsa-miR-3928-3p 1 0 0
chr19:39453360|39453521 hsa-miR-197-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6776-5p 1 0 0
chr19:39453360|39453521 hsa-miR-4728-3p 1 0 0
chr19:39453360|39453521 hsa-miR-7845-5p 1 0 0
chr19:39453360|39453521 hsa-miR-3605-5p 1 0 0
chr19:39453360|39453521 hsa-miR-503-5p 1 0 0
chr19:39453360|39453521 hsa-miR-3180-3p 1 0 0
chr19:39453360|39453521 hsa-miR-6732-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6805-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6798-5p 1 0 0
chr19:39453360|39453521 hsa-miR-3126-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6760-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6881-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6782-5p 1 0 0
chr19:39453360|39453521 hsa-miR-3150b-3p 1 0 0
chr19:39453360|39453521 hsa-miR-6852-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6835-5p 1 0 0
chr19:39453360|39453521 hsa-miR-1226-5p 1 0 0
chr19:39453360|39453521 hsa-miR-885-3p 1 0 0
chr19:39453360|39453521 hsa-miR-1908-5p 1 0 0
chr19:39453360|39453521 hsa-miR-877-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6749-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6847-5p 1 0 0
chr19:39453360|39453521 hsa-miR-3202 1 0 0
chr19:39453360|39453521 hsa-miR-3648 1 0 0
chr19:39453360|39453521 hsa-miR-6830-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6824-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6781-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6877-5p 1 0 0
chr19:39453360|39453521 hsa-miR-664b-5p 1 0 0
chr19:39453360|39453521 hsa-miR-423-5p 1 0 0
chr19:39453360|39453521 hsa-miR-7846-3p 1 0 0
chr19:39453360|39453521 hsa-miR-3944-5p 1 0 0
chr19:39453360|39453521 hsa-miR-5197-3p 1 0 0
chr19:39453360|39453521 hsa-miR-10400-5p 1 0 0
chr19:39453360|39453521 hsa-miR-1207-5p 1 0 0
chr19:39453360|39453521 hsa-miR-4763-3p 1 0 0
chr19:39453360|39453521 hsa-miR-6778-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6787-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6816-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6870-5p 1 0 0
chr19:39453360|39453521 hsa-miR-3180 1 0 0
chr19:39453360|39453521 hsa-miR-6743-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6754-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6851-5p 1 0 0
chr19:39453360|39453521 hsa-miR-11181-3p 1 0 0
chr19:39453360|39453521 hsa-miR-1249-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6763-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6797-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6808-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6879-5p 1 0 0
chr19:39453360|39453521 hsa-miR-7111-5p 1 0 0
chr19:39453360|39453521 hsa-miR-5189-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6780b-5p 1 0 0
chr19:39453360|39453521 hsa-miR-10396b-5p 1 0 0
chr19:39453360|39453521 hsa-miR-10526-3p 1 0 0
chr19:39453360|39453521 hsa-miR-1237-5p 1 0 0
chr19:39453360|39453521 hsa-miR-328-5p 1 0 0
chr19:39453360|39453521 hsa-miR-4632-5p 1 0 0
chr19:39453360|39453521 hsa-miR-4649-5p 1 0 0
chr19:39453360|39453521 hsa-miR-4726-5p 1 0 0
chr19:39453360|39453521 hsa-miR-4745-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6729-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6738-5p 1 0 0
chr19:39453360|39453521 hsa-miR-675-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6794-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6846-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6848-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6858-5p 1 0 0
chr19:39453360|39453521 hsa-miR-3187-5p 1 0 0
chr19:39453360|39453521 hsa-miR-4436b-3p 1 0 0
chr19:39453360|39453521 hsa-miR-4723-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6831-5p 1 0 0
chr19:39453360|39453521 hsa-miR-30c-1-3p 1 0 0
chr19:39453360|39453521 hsa-miR-6731-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6758-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6856-5p 1 0 0
chr19:39453360|39453521 hsa-miR-4700-5p 1 0 0
chr19:39453360|39453521 hsa-miR-3173-3p 1 0 0
chr19:39453360|39453521 hsa-miR-4716-3p 1 0 0
chr19:39453360|39453521 hsa-miR-4667-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6791-5p 1 0 0
chr19:39453360|39453521 hsa-miR-550a-3-5p 1 0 0
chr19:39453360|39453521 hsa-miR-550a-5p 1 0 0
chr19:39453360|39453521 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:39453360|39453521
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MAGFLGGSVIIFFLLFLIVFLLLFLLLFVLRLFFFLTARCTPPLF
Nucleotide Sequence ATGGCGGGGTTTCTTGGGGGGTCGGTCATCATCTTCTTCCTCCTCTTCCTCATCGTATTCCTCCTCCTCTTCCTCCTCCTCTTCGTCCTCAGGCTCTTCTTCTTTCTCACTGCCCGCTGCACTCCGCCGCTCTTC
CircID chr19:39453360|39453521
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MKPPWRGFLGGRSSSSSSSSSSYSSSSSSSSSSSGSSSFSLPAALRRSS
Nucleotide Sequence ATGAAGCCTCCATGGCGGGGTTTCTTGGGGGGTCGGTCATCATCTTCTTCCTCCTCTTCCTCATCGTATTCCTCCTCCTCTTCCTCCTCCTCTTCGTCCTCAGGCTCTTCTTCTTTCTCACTGCCCGCTGCACTCCGCCGCTCTTCG
CircID chr19:39453360|39453521
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MRTKRRRKRRRNTMRKRRKKMMTDPPRNPAMEASFWTRL
Nucleotide Sequence CTGAGGACGAAGAGGAGGAGGAAGAGGAGGAGGAATACGATGAGGAAGAGGAGGAAGAAGATGATGACCGACCCCCCAAGAAACCCCGCCATGGAGGCTTCATTCTGGACGAGGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab