CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39469088|39469305
Strand +
CircType exon
Host Gene ENSG00000196235.12;
Algorism CIRI2;
Sequence CTCCACGTTGTCCCCAGGTTGGAAGTTGTGCTCCCGCTCCTTCCCTGCAGGGGCAGTCGTAGGGCTGACTCGGGGGTTGCCACCATGGGCCGCCCCTGCTCCTTGGCCCAGGTTATAGAGGGGGATCAAATACCTGTGCTCTCAGTCACCACCTCCAGGTCAATGCCCTCTGGCTGGTCCTCAAACTTTTCCAGCTCAGAGAGTGTTGGCTTCACACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39469088|39469305 hsa-miR-192-5p 0 0 1
chr19:39469088|39469305 hsa-miR-192-3p 0 0 1
chr19:39469088|39469305 hsa-miR-215-5p 0 0 1
chr19:39469088|39469305 hsa-miR-215-3p 0 0 1
chr19:39469088|39469305 hsa-miR-134-5p 0 0 1
chr19:39469088|39469305 hsa-miR-134-3p 0 0 1
chr19:39469088|39469305 hsa-miR-558 0 0 1
chr19:39469088|39469305 hsa-miR-561-5p 0 0 1
chr19:39469088|39469305 hsa-miR-561-3p 0 0 1
chr19:39469088|39469305 hsa-miR-619-5p 0 0 1
chr19:39469088|39469305 hsa-miR-619-3p 0 0 1
chr19:39469088|39469305 hsa-miR-631 0 0 1
chr19:39469088|39469305 hsa-miR-640 0 0 1
chr19:39469088|39469305 hsa-miR-649 0 0 1
chr19:39469088|39469305 hsa-miR-1205 0 0 1
chr19:39469088|39469305 hsa-miR-1304-5p 0 0 1
chr19:39469088|39469305 hsa-miR-1304-3p 0 0 1
chr19:39469088|39469305 hsa-miR-1256 0 0 1
chr19:39469088|39469305 hsa-miR-1224-5p 0 1 1
chr19:39469088|39469305 hsa-miR-490-3p 0 1 1
chr19:39469088|39469305 hsa-miR-875-3p 0 0 1
chr19:39469088|39469305 hsa-miR-324-3p 0 0 1
chr19:39469088|39469305 hsa-miR-220c 0 0 1
chr19:39469088|39469305 hsa-miR-1826 0 0 1
chr19:39469088|39469305 hsa-miR-133b 0 1 0
chr19:39469088|39469305 hsa-miR-608 1 0 0
chr19:39469088|39469305 hsa-miR-943 1 0 0
chr19:39469088|39469305 hsa-miR-1268a 1 0 0
chr19:39469088|39469305 hsa-miR-2861 1 0 0
chr19:39469088|39469305 hsa-miR-4303 0 1 0
chr19:39469088|39469305 hsa-miR-4270 0 1 0
chr19:39469088|39469305 hsa-miR-3661 0 1 0
chr19:39469088|39469305 hsa-miR-1268b 1 0 0
chr19:39469088|39469305 hsa-miR-4439 0 1 0
chr19:39469088|39469305 hsa-miR-4463 1 0 0
chr19:39469088|39469305 hsa-miR-4499 1 0 0
chr19:39469088|39469305 hsa-miR-4513 1 0 0
chr19:39469088|39469305 hsa-miR-4651 1 0 0
chr19:39469088|39469305 hsa-miR-4656 1 0 0
chr19:39469088|39469305 hsa-miR-4706 1 1 0
chr19:39469088|39469305 hsa-miR-4739 1 0 0
chr19:39469088|39469305 hsa-miR-6075 0 1 0
chr19:39469088|39469305 hsa-miR-6081 1 1 0
chr19:39469088|39469305 hsa-miR-6090 1 0 0
chr19:39469088|39469305 hsa-miR-7974 1 0 0
chr19:39469088|39469305 hsa-miR-8070 1 0 0
chr19:39469088|39469305 hsa-miR-8089 0 1 0
chr19:39469088|39469305 hsa-miR-12119 1 0 0
chr19:39469088|39469305 hsa-miR-135a-3p 1 0 0
chr19:39469088|39469305 hsa-miR-4433b-3p 1 0 0
chr19:39469088|39469305 hsa-miR-4433a-3p 1 0 0
chr19:39469088|39469305 hsa-miR-6825-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6799-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6510-5p 0 1 0
chr19:39469088|39469305 hsa-miR-7851-3p 0 1 0
chr19:39469088|39469305 hsa-miR-432-5p 0 1 0
chr19:39469088|39469305 hsa-miR-6732-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6798-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6782-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6514-5p 1 0 0
chr19:39469088|39469305 hsa-miR-5088-5p 1 0 0
chr19:39469088|39469305 hsa-miR-1226-5p 1 1 0
chr19:39469088|39469305 hsa-miR-4786-3p 0 1 0
chr19:39469088|39469305 hsa-miR-4640-5p 1 1 0
chr19:39469088|39469305 hsa-miR-4787-5p 1 0 0
chr19:39469088|39469305 hsa-miR-149-3p 1 1 0
chr19:39469088|39469305 hsa-miR-3616-3p 0 1 0
chr19:39469088|39469305 hsa-miR-7843-3p 0 1 0
chr19:39469088|39469305 hsa-miR-6895-5p 0 1 0
chr19:39469088|39469305 hsa-miR-873-3p 1 0 0
chr19:39469088|39469305 hsa-miR-1910-5p 0 1 0
chr19:39469088|39469305 hsa-miR-5088-3p 1 0 0
chr19:39469088|39469305 hsa-miR-6857-3p 1 0 0
chr19:39469088|39469305 hsa-miR-133a-3p 0 1 0
chr19:39469088|39469305 hsa-miR-1207-5p 1 0 0
chr19:39469088|39469305 hsa-miR-4763-3p 1 0 0
chr19:39469088|39469305 hsa-miR-6769b-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6816-5p 0 1 0
chr19:39469088|39469305 hsa-miR-6865-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6743-5p 1 1 0
chr19:39469088|39469305 hsa-miR-6752-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6756-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6803-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6819-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6842-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6851-5p 1 1 0
chr19:39469088|39469305 hsa-miR-7110-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6722-3p 0 1 0
chr19:39469088|39469305 hsa-miR-6780a-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6797-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6879-5p 1 0 0
chr19:39469088|39469305 hsa-miR-5196-5p 1 1 0
chr19:39469088|39469305 hsa-miR-1237-5p 1 0 0
chr19:39469088|39469305 hsa-miR-4726-5p 1 0 0
chr19:39469088|39469305 hsa-miR-4745-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6735-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6848-5p 1 0 0
chr19:39469088|39469305 hsa-miR-1238-5p 1 0 0
chr19:39469088|39469305 hsa-miR-4758-5p 1 0 0
chr19:39469088|39469305 hsa-miR-6736-5p 1 0 0
chr19:39469088|39469305 hsa-miR-4747-5p 0 1 0
chr19:39469088|39469305 hsa-miR-4667-5p 0 1 0
chr19:39469088|39469305 hsa-miR-3689d 0 1 0
chr19:39469088|39469305 hsa-miR-6762-5p 0 1 0
chr19:39469088|39469305 hsa-miR-505-3p 0 1 0
chr19:39469088|39469305 hsa-miR-3136-5p 0 1 0
chr19:39469088|39469305 hsa-miR-6820-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:39469088|39469305
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MEVVLPLLPCALSHHLQVNALWLVLKLFQLRECWLHT
Nucleotide Sequence TTGGAAGTTGTGCTCCCGCTCCTTCCCTGTGCTCTCAGTCACCACCTCCAGGTCAATGCCCTCTGGCTGGTCCTCAAACTTTTCCAGCTCAGAGAGTGTTGGCTTCACACC
CircID chr19:39469088|39469305
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MSPGWKLCSRSFPVLSVTTSRSMPSGWSSNFSSSESVGFT
Nucleotide Sequence TTGTCCCCAGGTTGGAAGTTGTGCTCCCGCTCCTTCCCTGTGCTCTCAGTCACCACCTCCAGGTCAATGCCCTCTGGCTGGTCCTCAAACTTTTCCAGCTCAGAGAGTGTTGGCTTCACA
CircID chr19:39469088|39469305
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MCSQSPPPGQCPLAGPQTFPAQRVLASH
Nucleotide Sequence CTGTGCTCTCAGTCACCACCTCCAGGTCAATGCCCTCTGGCTGGTCCTCAAACTTTTCCAGCTCAGAGAGTGTTGGCTTCACAC
CircID chr19:39469088|39469305
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVE
Nucleotide Sequence CTGGAAAAGTTTGAGGACCAGCCAGAGGGCATTGACCTGGAGGTGGTGACTGAGAGCACAGGGAAGGAGCGGGAGCACAACTTCCAACCTGGGGACAACGTGGAG
CircID chr19:39469088|39469305
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence MEVVLPLLPCRGSRRADSGVATMGRPCSLAQVIEGDQIPVLSVTTSRSMPSGWSSNFSSSESVGFT
Nucleotide Sequence TTGGAAGTTGTGCTCCCGCTCCTTCCCTGCAGGGGCAGTCGTAGGGCTGACTCGGGGGTTGCCACCATGGGCCGCCCCTGCTCCTTGGCCCAGGTTATAGAGGGGGATCAAATACCTGTGCTCTCAGTCACCACCTCCAGGTCAATGCCCTCTGGCTGGTCCTCAAACTTTTCCAGCTCAGAGAGTGTTGGCTTCACA
CircID chr19:39469088|39469305
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MSPGWKLCSRSFPAGAVVGLTRGLPPWAAPAPWPRL
Nucleotide Sequence TTGTCCCCAGGTTGGAAGTTGTGCTCCCGCTCCTTCCCTGCAGGGGCAGTCGTAGGGCTGACTCGGGGGTTGCCACCATGGGCCGCCCCTGCTCCTTGGCCCAGGTTATAG
CircID chr19:39469088|39469305
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MLLGPGYRGGSNTCALSHHLQVNALWLVLKLFQLRECWLHT
Nucleotide Sequence CTGCTCCTTGGCCCAGGTTATAGAGGGGGATCAAATACCTGTGCTCTCAGTCACCACCTCCAGGTCAATGCCCTCTGGCTGGTCCTCAAACTTTTCCAGCTCAGAGAGTGTTGGCTTCACACC
CircID chr19:39469088|39469305
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MVATPESALRLPLQGRSGSTTSNLGTTW
Nucleotide Sequence ATGGTGGCAACCCCCGAGTCAGCCCTACGACTGCCCCTGCAGGGAAGGAGCGGGAGCACAACTTCCAACCTGGGGACAACGTGG
CircID chr19:39469088|39469305
ORF Type ORF6
Protein Length 43
Nucleotide Length 129
Protein Sequence MIPLYNLGQGAGAAHGGNPRVSPTTAPAGKEREHNFQPGDNVE
Nucleotide Sequence TTGATCCCCCTCTATAACCTGGGCCAAGGAGCAGGGGCGGCCCATGGTGGCAACCCCCGAGTCAGCCCTACGACTGCCCCTGCAGGGAAGGAGCGGGAGCACAACTTCCAACCTGGGGACAACGTGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab