CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39472877|39473114
Strand +
CircType exon
Host Gene ENSG00000196235.12;
Algorism CIRI2;
Sequence ACCGTGGTGAGCCGCTGACGGTCCACAGAGATGGTCTGGCAGGTGGAGTGCAGCTCCACACGGGCCGTGGACTCTGTGGCATCTTTCACCACACCGATGTAGCCTGCAGGGGGACAGGAGGTCAGGCTGGGCAGGCTCTCCTTCACCATGCCCCTCCCCAGGCCTCCACAGGCCTCGCAGGTCACCTTTGTAGGGCCCCTGGGAGATGCGCACGGTCTGGCCGATGAGTTCGTTGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39472877|39473114 hsa-miR-197-5p 0 0 1
chr19:39472877|39473114 hsa-miR-197-3p 0 0 1
chr19:39472877|39473114 hsa-miR-221-5p 0 0 1
chr19:39472877|39473114 hsa-miR-221-3p 0 0 1
chr19:39472877|39473114 hsa-miR-222-5p 0 0 1
chr19:39472877|39473114 hsa-miR-222-3p 0 0 1
chr19:39472877|39473114 hsa-miR-150-5p 0 0 1
chr19:39472877|39473114 hsa-miR-150-3p 0 0 1
chr19:39472877|39473114 hsa-miR-558 0 0 1
chr19:39472877|39473114 hsa-miR-596 1 1 1
chr19:39472877|39473114 hsa-miR-631 0 0 1
chr19:39472877|39473114 hsa-miR-650 0 0 1
chr19:39472877|39473114 hsa-miR-661 0 0 1
chr19:39472877|39473114 hsa-miR-933 0 0 1
chr19:39472877|39473114 hsa-miR-939-5p 0 0 1
chr19:39472877|39473114 hsa-miR-939-3p 0 0 1
chr19:39472877|39473114 hsa-miR-1205 0 0 1
chr19:39472877|39473114 hsa-miR-1252-5p 0 0 1
chr19:39472877|39473114 hsa-miR-1252-3p 0 0 1
chr19:39472877|39473114 hsa-miR-532-3p 0 0 1
chr19:39472877|39473114 hsa-miR-1283 0 1 1
chr19:39472877|39473114 hsa-miR-423-5p 1 1 1
chr19:39472877|39473114 hsa-miR-524-5p 0 0 1
chr19:39472877|39473114 hsa-miR-520d-5p 0 0 1
chr19:39472877|39473114 hsa-miR-220b 0 0 1
chr19:39472877|39473114 hsa-miR-923 0 0 1
chr19:39472877|39473114 hsa-miR-346 1 1 0
chr19:39472877|39473114 hsa-miR-1183 1 0 0
chr19:39472877|39473114 hsa-miR-4253 0 1 0
chr19:39472877|39473114 hsa-miR-3911 0 1 0
chr19:39472877|39473114 hsa-miR-1268b 1 1 0
chr19:39472877|39473114 hsa-miR-4443 0 1 0
chr19:39472877|39473114 hsa-miR-4449 1 0 0
chr19:39472877|39473114 hsa-miR-4688 1 1 0
chr19:39472877|39473114 hsa-miR-4734 1 0 0
chr19:39472877|39473114 hsa-miR-6068 0 1 0
chr19:39472877|39473114 hsa-miR-6085 1 0 0
chr19:39472877|39473114 hsa-miR-6860 1 1 0
chr19:39472877|39473114 hsa-miR-7703 0 1 0
chr19:39472877|39473114 hsa-miR-8089 0 1 0
chr19:39472877|39473114 hsa-miR-4665-3p 0 1 0
chr19:39472877|39473114 hsa-miR-6825-5p 0 1 0
chr19:39472877|39473114 hsa-miR-7114-5p 0 1 0
chr19:39472877|39473114 hsa-miR-6089 1 0 0
chr19:39472877|39473114 hsa-miR-7847-3p 0 1 0
chr19:39472877|39473114 hsa-miR-6849-3p 0 1 0
chr19:39472877|39473114 hsa-miR-6881-5p 1 0 0
chr19:39472877|39473114 hsa-miR-6874-5p 0 1 0
chr19:39472877|39473114 hsa-miR-6735-3p 0 1 0
chr19:39472877|39473114 hsa-miR-7109-5p 1 0 0
chr19:39472877|39473114 hsa-miR-4763-5p 1 1 0
chr19:39472877|39473114 hsa-miR-1229-5p 1 0 0
chr19:39472877|39473114 hsa-miR-1228-5p 1 0 0
chr19:39472877|39473114 hsa-miR-6771-5p 1 0 0
chr19:39472877|39473114 hsa-miR-6749-5p 1 0 0
chr19:39472877|39473114 hsa-miR-149-3p 0 1 0
chr19:39472877|39473114 hsa-miR-660-3p 0 1 0
chr19:39472877|39473114 hsa-miR-6748-3p 0 1 0
chr19:39472877|39473114 hsa-miR-4797-5p 0 1 0
chr19:39472877|39473114 hsa-miR-6502-3p 0 1 0
chr19:39472877|39473114 hsa-miR-4763-3p 1 0 0
chr19:39472877|39473114 hsa-miR-6816-5p 1 0 0
chr19:39472877|39473114 hsa-miR-6775-5p 1 1 0
chr19:39472877|39473114 hsa-miR-6743-5p 1 1 0
chr19:39472877|39473114 hsa-miR-6756-5p 1 0 0
chr19:39472877|39473114 hsa-miR-7107-5p 1 1 0
chr19:39472877|39473114 hsa-miR-6763-5p 1 1 0
chr19:39472877|39473114 hsa-miR-6779-5p 1 0 0
chr19:39472877|39473114 hsa-miR-7111-5p 1 0 0
chr19:39472877|39473114 hsa-miR-4728-5p 1 1 0
chr19:39472877|39473114 hsa-miR-6862-5p 0 1 0
chr19:39472877|39473114 hsa-miR-328-5p 1 0 0
chr19:39472877|39473114 hsa-miR-6848-5p 1 0 0
chr19:39472877|39473114 hsa-miR-6858-5p 1 0 0
chr19:39472877|39473114 hsa-miR-6883-5p 0 1 0
chr19:39472877|39473114 hsa-miR-6885-5p 1 0 0
chr19:39472877|39473114 hsa-miR-6511b-5p 0 1 0
chr19:39472877|39473114 hsa-miR-4700-5p 0 1 0
chr19:39472877|39473114 hsa-miR-6785-5p 0 1 0
chr19:39472877|39473114 hsa-miR-4667-5p 1 1 0
chr19:39472877|39473114 hsa-miR-6762-5p 1 0 0
chr19:39472877|39473114 hsa-miR-4722-3p 1 1 0
chr19:39472877|39473114 hsa-miR-10394-5p 1 0 0
chr19:39472877|39473114 hsa-miR-1234-3p 0 1 0
chr19:39472877|39473114 hsa-miR-6764-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:39472877|39473114
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MGRLSFTMPLPRPPQASQVTFVGPLGDAHGLADEFVV
Nucleotide Sequence CTGGGCAGGCTCTCCTTCACCATGCCCCTCCCCAGGCCTCCACAGGCCTCGCAGGTCACCTTTGTAGGGCCCCTGGGAGATGCGCACGGTCTGGCCGATGAGTTCGTTGTC
CircID chr19:39472877|39473114
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MWHLSPHRCSLQGDRRSGWAGSPSPCPSPGLHRPRRSPL
Nucleotide Sequence CTGTGGCATCTTTCACCACACCGATGTAGCCTGCAGGGGGACAGGAGGTCAGGCTGGGCAGGCTCTCCTTCACCATGCCCCTCCCCAGGCCTCCACAGGCCTCGCAGGTCACCTTTGTAG
CircID chr19:39472877|39473114
ORF Type ORF3
Protein Length 70
Nucleotide Length 213
Protein Sequence MTVHRDGLAGGVQLHTGRGLCGIFHHTDVACRGTGGQAGQALLHHAPPQASTGLAGHLCRAPGRCARSGR
Nucleotide Sequence CTGACGGTCCACAGAGATGGTCTGGCAGGTGGAGTGCAGCTCCACACGGGCCGTGGACTCTGTGGCATCTTTCACCACACCGATGTAGCCTGCAGGGGGACAGGAGGTCAGGCTGGGCAGGCTCTCCTTCACCATGCCCCTCCCCAGGCCTCCACAGGCCTCGCAGGTCACCTTTGTAGGGCCCCTGGGAGATGCGCACGGTCTGGCCGATGA
CircID chr19:39472877|39473114
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MPQSPRPVWSCTPPARPSLWTVSGSPR
Nucleotide Sequence ATGCCACAGAGTCCACGGCCCGTGTGGAGCTGCACTCCACCTGCCAGACCATCTCTGTGGACCGTCAGCGGCTCACCACGG
CircID chr19:39472877|39473114
ORF Type ORF5
Protein Length 60
Nucleotide Length 180
Protein Sequence MRGLWRPGEGHGEGEPAQPDLLSPCRLHRCGERCHRVHGPCGAALHLPDHLCGPSAAHHG
Nucleotide Sequence CTGCGAGGCCTGTGGAGGCCTGGGGAGGGGCATGGTGAAGGAGAGCCTGCCCAGCCTGACCTCCTGTCCCCCTGCAGGCTACATCGGTGTGGTGAAAGATGCCACAGAGTCCACGGCCCGTGTGGAGCTGCACTCCACCTGCCAGACCATCTCTGTGGACCGTCAGCGGCTCACCACGGT
CircID chr19:39472877|39473114
ORF Type ORF6
Protein Length 53
Nucleotide Length 159
Protein Sequence MGRGMVKESLPSLTSCPPAGYIGVVKDATESTARVELHSTCQTISVDRQRLTT
Nucleotide Sequence CTGGGGAGGGGCATGGTGAAGGAGAGCCTGCCCAGCCTGACCTCCTGTCCCCCTGCAGGCTACATCGGTGTGGTGAAAGATGCCACAGAGTCCACGGCCCGTGTGGAGCTGCACTCCACCTGCCAGACCATCTCTGTGGACCGTCAGCGGCTCACCACG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab