CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3977273|3977525
Strand -
CircType exon
Host Gene ENSG00000167658.14;
Algorism CIRI2;
Sequence CTGGGACTCCTCGAACACGTGGCCCCGCTTCCTGTTCAAAACCCCGTAGATGCCACCGACCACCTGCTCTGGACAGGCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3977273|3977525 hsa-miR-198 0 1 1
chr19:3977273|3977525 hsa-miR-34a-5p 0 0 1
chr19:3977273|3977525 hsa-miR-34a-3p 0 0 1
chr19:3977273|3977525 hsa-miR-204-5p 0 0 1
chr19:3977273|3977525 hsa-miR-204-3p 0 0 1
chr19:3977273|3977525 hsa-miR-211-5p 0 0 1
chr19:3977273|3977525 hsa-miR-211-3p 0 0 1
chr19:3977273|3977525 hsa-miR-449a 0 1 1
chr19:3977273|3977525 hsa-miR-504-5p 0 0 1
chr19:3977273|3977525 hsa-miR-504-3p 0 0 1
chr19:3977273|3977525 hsa-miR-611 0 0 1
chr19:3977273|3977525 hsa-miR-620 0 0 1
chr19:3977273|3977525 hsa-miR-623 0 0 1
chr19:3977273|3977525 hsa-miR-648 0 0 1
chr19:3977273|3977525 hsa-miR-449b-5p 0 0 1
chr19:3977273|3977525 hsa-miR-449b-3p 0 0 1
chr19:3977273|3977525 hsa-miR-744-5p 0 0 1
chr19:3977273|3977525 hsa-miR-744-3p 0 0 1
chr19:3977273|3977525 hsa-miR-1237-5p 0 0 1
chr19:3977273|3977525 hsa-miR-1237-3p 0 0 1
chr19:3977273|3977525 hsa-miR-1294 0 0 1
chr19:3977273|3977525 hsa-miR-1270 0 0 1
chr19:3977273|3977525 hsa-miR-1825 0 0 1
chr19:3977273|3977525 hsa-miR-125a-3p 0 1 1
chr19:3977273|3977525 hsa-miR-199a-5p 0 1 1
chr19:3977273|3977525 hsa-miR-1289 0 0 1
chr19:3977273|3977525 hsa-miR-525-5p 0 0 1
chr19:3977273|3977525 hsa-miR-490-5p 0 0 1
chr19:3977273|3977525 hsa-miR-628-5p 0 0 1
chr19:3977273|3977525 hsa-miR-199b-5p 0 1 1
chr19:3977273|3977525 hsa-miR-520a-5p 0 0 1
chr19:3977273|3977525 hsa-miR-34c-5p 0 1 1
chr19:3977273|3977525 hsa-miR-151-5p 0 0 1
chr19:3977273|3977525 hsa-miR-1280 0 0 1
chr19:3977273|3977525 hsa-miR-323-5p 0 0 1
chr19:3977273|3977525 hsa-miR-346 1 0 0
chr19:3977273|3977525 hsa-miR-636 1 0 0
chr19:3977273|3977525 hsa-miR-663a 1 0 0
chr19:3977273|3977525 hsa-miR-151b 0 1 0
chr19:3977273|3977525 hsa-miR-1293 1 0 0
chr19:3977273|3977525 hsa-miR-1913 1 0 0
chr19:3977273|3977525 hsa-miR-2278 0 1 0
chr19:3977273|3977525 hsa-miR-2861 1 0 0
chr19:3977273|3977525 hsa-miR-4298 1 0 0
chr19:3977273|3977525 hsa-miR-4302 0 1 0
chr19:3977273|3977525 hsa-miR-4253 1 0 0
chr19:3977273|3977525 hsa-miR-3665 1 0 0
chr19:3977273|3977525 hsa-miR-4526 1 0 0
chr19:3977273|3977525 hsa-miR-4683 1 1 0
chr19:3977273|3977525 hsa-miR-4734 1 0 0
chr19:3977273|3977525 hsa-miR-4741 1 0 0
chr19:3977273|3977525 hsa-miR-5194 1 0 0
chr19:3977273|3977525 hsa-miR-6165 1 0 0
chr19:3977273|3977525 hsa-miR-7704 1 0 0
chr19:3977273|3977525 hsa-miR-9986 0 1 0
chr19:3977273|3977525 hsa-miR-12119 1 0 0
chr19:3977273|3977525 hsa-miR-214-5p 0 1 0
chr19:3977273|3977525 hsa-miR-323a-5p 0 1 0
chr19:3977273|3977525 hsa-miR-6765-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6890-5p 1 0 0
chr19:3977273|3977525 hsa-miR-181a-2-3p 0 1 0
chr19:3977273|3977525 hsa-miR-8069 1 0 0
chr19:3977273|3977525 hsa-miR-4728-3p 1 1 0
chr19:3977273|3977525 hsa-miR-4725-5p 0 1 0
chr19:3977273|3977525 hsa-miR-6732-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6821-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6882-3p 0 1 0
chr19:3977273|3977525 hsa-miR-6786-5p 1 0 0
chr19:3977273|3977525 hsa-miR-4763-5p 0 1 0
chr19:3977273|3977525 hsa-miR-193b-5p 0 1 0
chr19:3977273|3977525 hsa-miR-4783-3p 1 0 0
chr19:3977273|3977525 hsa-miR-6753-5p 1 0 0
chr19:3977273|3977525 hsa-miR-4691-3p 0 1 0
chr19:3977273|3977525 hsa-miR-4715-3p 0 1 0
chr19:3977273|3977525 hsa-miR-5001-3p 0 1 0
chr19:3977273|3977525 hsa-miR-885-3p 1 0 0
chr19:3977273|3977525 hsa-miR-1908-5p 1 0 0
chr19:3977273|3977525 hsa-miR-7113-3p 1 0 0
chr19:3977273|3977525 hsa-miR-4690-5p 1 0 0
chr19:3977273|3977525 hsa-miR-4732-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6802-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6825-3p 0 1 0
chr19:3977273|3977525 hsa-miR-6752-3p 0 1 0
chr19:3977273|3977525 hsa-miR-6773-3p 0 1 0
chr19:3977273|3977525 hsa-miR-6501-3p 0 1 0
chr19:3977273|3977525 hsa-miR-1296-3p 1 0 0
chr19:3977273|3977525 hsa-miR-3177-3p 0 1 0
chr19:3977273|3977525 hsa-miR-4750-3p 0 1 0
chr19:3977273|3977525 hsa-miR-329-5p 0 1 0
chr19:3977273|3977525 hsa-miR-6733-3p 0 1 0
chr19:3977273|3977525 hsa-miR-196b-3p 0 1 0
chr19:3977273|3977525 hsa-miR-4763-3p 1 0 0
chr19:3977273|3977525 hsa-miR-6769b-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6865-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6893-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6815-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6842-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6851-5p 1 0 0
chr19:3977273|3977525 hsa-miR-6879-5p 1 0 0
chr19:3977273|3977525 hsa-miR-10396a-5p 1 0 0
chr19:3977273|3977525 hsa-miR-10396b-5p 1 0 0
chr19:3977273|3977525 hsa-miR-4632-5p 0 1 0
chr19:3977273|3977525 hsa-miR-4685-5p 1 0 0
chr19:3977273|3977525 hsa-miR-4726-5p 1 1 0
chr19:3977273|3977525 hsa-miR-4745-3p 1 0 0
chr19:3977273|3977525 hsa-miR-6845-5p 0 1 0
chr19:3977273|3977525 hsa-miR-6762-5p 1 1 0
chr19:3977273|3977525 hsa-miR-4722-3p 0 1 0
chr19:3977273|3977525 hsa-miR-6727-3p 0 1 0
chr19:3977273|3977525 hsa-miR-769-3p 0 1 0
chr19:3977273|3977525 hsa-miR-4769-3p 0 1 0
chr19:3977273|3977525 hsa-miR-151a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:3977273|3977525
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence LGLLEHVAPLPVQNPVDATDHLLWTGP
Nucleotide Sequence CTGGGACTCCTCGAACACGTGGCCCCGCTTCCTGTTCAAAACCCCGTAGATGCCACCGACCACCTGCTCTGGACAGGCCCC
CircID chr19:3977273|3977525
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MSRAGGRWHLRGFEQEAGPRVRGVP
Nucleotide Sequence CTGTCCAGAGCAGGTGGTCGGTGGCATCTACGGGGTTTTGAACAGGAAGCGGGGCCACGTGTTCGAGGAGTCCCA
CircID chr19:3977273|3977525
ORF Type ORF1
Protein Length 57
Nucleotide Length 174
Protein Sequence LGLLEHVAPLPVQNPVDATDHLLWTLPEGKENLSVAAGQDGGRVSGGRVDLTWISTR
Nucleotide Sequence CTGGGACTCCTCGAACACGTGGCCCCGCTTCCTGTTCAAAACCCCGTAGATGCCACCGACCACCTGCTCTGGACACTGCCAGAAGGGAAAGAAAACCTGTCAGTGGCCGCTGGGCAGGACGGTGGCAGGGTCAGCGGTGGGCGGGTAGACCTCACCTGGATCTCCACAAGGTAG
CircID chr19:3977273|3977525
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MPPTTCSGHCQKGKKTCQWPLGRTVAGSAVGG
Nucleotide Sequence ATGCCACCGACCACCTGCTCTGGACACTGCCAGAAGGGAAAGAAAACCTGTCAGTGGCCGCTGGGCAGGACGGTGGCAGGGTCAGCGGTGGGCGGGTAG
CircID chr19:3977273|3977525
ORF Type ORF3
Protein Length 61
Nucleotide Length 183
Protein Sequence MDTARRERKPVSGRWAGRWQGQRWAGRPHLDLHKVDGLHEAWLGGQHTGIEAAPCCGDDLA
Nucleotide Sequence CTGGACACTGCCAGAAGGGAAAGAAAACCTGTCAGTGGCCGCTGGGCAGGACGGTGGCAGGGTCAGCGGTGGGCGGGTAGACCTCACCTGGATCTCCACAAGGTAGATGGGCTCCATGAGGCGTGGCTGGGCGGTCAGCACACTGGCATAGAGGCAGCGCCGTGCTGTGGGGATGATCTGGCC
CircID chr19:3977273|3977525
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MTGFLSLLAVSRAGGRWHLRGFEQEAGPRVRGVP
Nucleotide Sequence CTGACAGGTTTTCTTTCCCTTCTGGCAGTGTCCAGAGCAGGTGGTCGGTGGCATCTACGGGGTTTTGAACAGGAAGCGGGGCCACGTGTTCGAGGAGTCCCA
CircID chr19:3977273|3977525
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence MPLCQCADRPATPHGAHLPCGDPGEVYPPTADPATVLPSGH
Nucleotide Sequence CTGCCTCTATGCCAGTGTGCTGACCGCCCAGCCACGCCTCATGGAGCCCATCTACCTTGTGGAGATCCAGGTGAGGTCTACCCGCCCACCGCTGACCCTGCCACCGTCCTGCCCAGCGGCCACTGA
CircID chr19:3977273|3977525
ORF Type ORF6
Protein Length 56
Nucleotide Length 171
Protein Sequence MTAQPRLMEPIYLVEIQVRSTRPPLTLPPSCPAATDRFSFPSGSVQSRWSVASTGF
Nucleotide Sequence CTGACCGCCCAGCCACGCCTCATGGAGCCCATCTACCTTGTGGAGATCCAGGTGAGGTCTACCCGCCCACCGCTGACCCTGCCACCGTCCTGCCCAGCGGCCACTGACAGGTTTTCTTTCCCTTCTGGCAGTGTCCAGAGCAGGTGGTCGGTGGCATCTACGGGGTTTTGA
CircID chr19:3977273|3977525
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence LGLLEHVAPLPVQNPVDATDHLLWTLDLHKVDGLHEAWLGGQHTGIEAAPCCGDDLA
Nucleotide Sequence CTGGGACTCCTCGAACACGTGGCCCCGCTTCCTGTTCAAAACCCCGTAGATGCCACCGACCACCTGCTCTGGACACTGGATCTCCACAAGGTAGATGGGCTCCATGAGGCGTGGCTGGGCGGTCAGCACACTGGCATAGAGGCAGCGCCGTGCTGTGGGGATGATCTGGCC
CircID chr19:3977273|3977525
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MPLCQCADRPATPHGAHLPCGDPVSRAGGRWHLRGFEQEAGPRVRGVP
Nucleotide Sequence CTGCCTCTATGCCAGTGTGCTGACCGCCCAGCCACGCCTCATGGAGCCCATCTACCTTGTGGAGATCCAGTGTCCAGAGCAGGTGGTCGGTGGCATCTACGGGGTTTTGAACAGGAAGCGGGGCCACGTGTTCGAGGAGTCCCA
CircID chr19:3977273|3977525
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQ
Nucleotide Sequence CTGACCGCCCAGCCACGCCTCATGGAGCCCATCTACCTTGTGGAGATCCAGTGTCCAGAGCAGGTGGTCGGTGGCATCTACGGGGTTTTGAACAGGAAGCGGGGCCACGTGTTCGAGGAGTCCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab