CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3977494|3977888
Strand +
CircType exon
Host Gene ENSG00000167658.14;
Algorism CIRI2;
Sequence CAAGGGTGTGCAGTACCTCAACGAGATCAAGGACAGTGTGGTGGCCGGCTTCCAGTGGGCCACCAAGGAGGTGAGGCACGGCTCAGCATGTGCAGACCACACCCGTTTCCAGGCTCTAGAGGGACCTCATGGTCCTGCCTCCCGAGACAGAGACCCTAATGGGGCCAAGGCGGGCAAGGCCCCAGGTCCCCCTGGTGGAGACCTGCAGGACTTGGCAGGTGGAGGGCAAGCAGCCGAGGTGTGTCCGGCCCTTGACGGTGGCTCTCCCCCTCCCCCAGGGCGCACTGTGTGAGGAGAACATGCGGGGTGTGCGCTTCGACGTCCACGACGTCACCCTGCACGCCGACGCCATCCACCGCGGAGGGGGCCAGATCATCCCCACAGCACGGCGCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3977494|3977888 hsa-let-7b-5p 0 0 1
chr19:3977494|3977888 hsa-let-7b-3p 0 0 1
chr19:3977494|3977888 hsa-let-7c-5p 0 0 1
chr19:3977494|3977888 hsa-let-7c-3p 0 0 1
chr19:3977494|3977888 hsa-let-7d-5p 0 0 1
chr19:3977494|3977888 hsa-let-7d-3p 0 0 1
chr19:3977494|3977888 hsa-let-7e-5p 0 0 1
chr19:3977494|3977888 hsa-let-7e-3p 0 0 1
chr19:3977494|3977888 hsa-miR-98-5p 0 0 1
chr19:3977494|3977888 hsa-miR-98-3p 0 0 1
chr19:3977494|3977888 hsa-miR-217-5p 0 0 1
chr19:3977494|3977888 hsa-miR-217-3p 0 0 1
chr19:3977494|3977888 hsa-let-7g-5p 0 0 1
chr19:3977494|3977888 hsa-let-7g-3p 0 0 1
chr19:3977494|3977888 hsa-let-7i-5p 0 0 1
chr19:3977494|3977888 hsa-let-7i-3p 0 0 1
chr19:3977494|3977888 hsa-miR-377-5p 0 0 1
chr19:3977494|3977888 hsa-miR-377-3p 0 0 1
chr19:3977494|3977888 hsa-miR-328-5p 0 0 1
chr19:3977494|3977888 hsa-miR-328-3p 0 0 1
chr19:3977494|3977888 hsa-miR-202-5p 0 0 1
chr19:3977494|3977888 hsa-miR-202-3p 0 0 1
chr19:3977494|3977888 hsa-miR-492 0 0 1
chr19:3977494|3977888 hsa-miR-591 0 1 1
chr19:3977494|3977888 hsa-miR-593-5p 0 0 1
chr19:3977494|3977888 hsa-miR-593-3p 0 0 1
chr19:3977494|3977888 hsa-miR-625-5p 0 0 1
chr19:3977494|3977888 hsa-miR-625-3p 0 0 1
chr19:3977494|3977888 hsa-miR-631 0 0 1
chr19:3977494|3977888 hsa-miR-637 0 1 1
chr19:3977494|3977888 hsa-miR-650 0 1 1
chr19:3977494|3977888 hsa-miR-657 0 0 1
chr19:3977494|3977888 hsa-miR-874-5p 0 0 1
chr19:3977494|3977888 hsa-miR-874-3p 0 0 1
chr19:3977494|3977888 hsa-miR-940 0 1 1
chr19:3977494|3977888 hsa-miR-1182 0 1 1
chr19:3977494|3977888 hsa-miR-1228-5p 0 0 1
chr19:3977494|3977888 hsa-miR-1228-3p 0 0 1
chr19:3977494|3977888 hsa-miR-663b 0 0 1
chr19:3977494|3977888 hsa-miR-1205 0 0 1
chr19:3977494|3977888 hsa-miR-1286 0 1 1
chr19:3977494|3977888 hsa-miR-1275 0 1 1
chr19:3977494|3977888 hsa-miR-1827 0 0 1
chr19:3977494|3977888 hsa-miR-671-5p 0 0 1
chr19:3977494|3977888 hsa-miR-491-5p 0 0 1
chr19:3977494|3977888 hsa-miR-875-3p 0 1 1
chr19:3977494|3977888 hsa-miR-518d-5p 0 0 1
chr19:3977494|3977888 hsa-miR-519b-5p 0 1 1
chr19:3977494|3977888 hsa-miR-519c-5p 0 1 1
chr19:3977494|3977888 hsa-miR-520c-5p 0 0 1
chr19:3977494|3977888 hsa-miR-509-3-5p 0 0 1
chr19:3977494|3977888 hsa-miR-509-5p 0 0 1
chr19:3977494|3977888 hsa-miR-342-3p 0 1 1
chr19:3977494|3977888 hsa-miR-362-3p 0 0 1
chr19:3977494|3977888 hsa-miR-128 0 0 1
chr19:3977494|3977888 hsa-miR-642 0 0 1
chr19:3977494|3977888 hsa-let-7a 0 0 1
chr19:3977494|3977888 hsa-let-7f 0 0 1
chr19:3977494|3977888 hsa-miR-1254 0 0 1
chr19:3977494|3977888 hsa-miR-329 0 0 1
chr19:3977494|3977888 hsa-miR-526a 0 0 1
chr19:3977494|3977888 hsa-miR-557 1 1 0
chr19:3977494|3977888 hsa-miR-567 0 1 0
chr19:3977494|3977888 hsa-miR-596 1 0 0
chr19:3977494|3977888 hsa-miR-661 1 1 0
chr19:3977494|3977888 hsa-miR-1470 0 1 0
chr19:3977494|3977888 hsa-miR-3137 1 0 0
chr19:3977494|3977888 hsa-miR-3175 0 1 0
chr19:3977494|3977888 hsa-miR-3649 0 1 0
chr19:3977494|3977888 hsa-miR-3661 0 1 0
chr19:3977494|3977888 hsa-miR-4469 0 1 0
chr19:3977494|3977888 hsa-miR-4492 1 0 0
chr19:3977494|3977888 hsa-miR-4515 1 0 0
chr19:3977494|3977888 hsa-miR-4527 0 1 0
chr19:3977494|3977888 hsa-miR-4538 1 0 0
chr19:3977494|3977888 hsa-miR-5681b 0 1 0
chr19:3977494|3977888 hsa-miR-6079 0 1 0
chr19:3977494|3977888 hsa-miR-7706 0 1 0
chr19:3977494|3977888 hsa-miR-9899 1 0 0
chr19:3977494|3977888 hsa-miR-6765-5p 1 0 0
chr19:3977494|3977888 hsa-miR-212-5p 0 1 0
chr19:3977494|3977888 hsa-miR-6825-5p 0 1 0
chr19:3977494|3977888 hsa-miR-6857-5p 0 1 0
chr19:3977494|3977888 hsa-miR-8071 1 0 0
chr19:3977494|3977888 hsa-miR-6762-3p 1 1 0
chr19:3977494|3977888 hsa-miR-3189-5p 0 1 0
chr19:3977494|3977888 hsa-miR-4728-3p 1 1 0
chr19:3977494|3977888 hsa-miR-1915-5p 0 1 0
chr19:3977494|3977888 hsa-miR-1292-5p 1 0 0
chr19:3977494|3977888 hsa-miR-3180-3p 1 0 0
chr19:3977494|3977888 hsa-miR-6796-5p 0 1 0
chr19:3977494|3977888 hsa-miR-6798-5p 0 1 0
chr19:3977494|3977888 hsa-miR-3691-3p 0 1 0
chr19:3977494|3977888 hsa-miR-6786-5p 1 0 0
chr19:3977494|3977888 hsa-miR-6852-5p 0 1 0
chr19:3977494|3977888 hsa-miR-6753-5p 0 1 0
chr19:3977494|3977888 hsa-miR-6771-5p 0 1 0
chr19:3977494|3977888 hsa-miR-6749-5p 1 0 0
chr19:3977494|3977888 hsa-miR-149-3p 0 1 0
chr19:3977494|3977888 hsa-miR-4638-5p 0 1 0
chr19:3977494|3977888 hsa-miR-6813-3p 0 1 0
chr19:3977494|3977888 hsa-miR-6887-3p 0 1 0
chr19:3977494|3977888 hsa-miR-216a-3p 0 1 0
chr19:3977494|3977888 hsa-miR-1199-3p 1 0 0
chr19:3977494|3977888 hsa-miR-3126-3p 0 1 0
chr19:3977494|3977888 hsa-miR-431-5p 0 1 0
chr19:3977494|3977888 hsa-miR-517-5p 0 1 0
chr19:3977494|3977888 hsa-miR-4763-3p 1 0 0
chr19:3977494|3977888 hsa-miR-6769b-5p 1 0 0
chr19:3977494|3977888 hsa-miR-6787-5p 1 0 0
chr19:3977494|3977888 hsa-miR-6870-5p 0 1 0
chr19:3977494|3977888 hsa-miR-5001-5p 1 0 0
chr19:3977494|3977888 hsa-miR-6756-5p 1 0 0
chr19:3977494|3977888 hsa-miR-6803-5p 1 0 0
chr19:3977494|3977888 hsa-miR-6808-5p 0 1 0
chr19:3977494|3977888 hsa-miR-7111-5p 1 1 0
chr19:3977494|3977888 hsa-miR-6754-3p 0 1 0
chr19:3977494|3977888 hsa-miR-3620-5p 1 0 0
chr19:3977494|3977888 hsa-miR-4728-5p 0 1 0
chr19:3977494|3977888 hsa-miR-5196-5p 1 0 0
chr19:3977494|3977888 hsa-miR-1909-3p 1 0 0
chr19:3977494|3977888 hsa-miR-6794-5p 0 1 0
chr19:3977494|3977888 hsa-miR-4723-5p 0 1 0
chr19:3977494|3977888 hsa-miR-1199-5p 0 1 0
chr19:3977494|3977888 hsa-miR-4665-5p 0 1 0
chr19:3977494|3977888 hsa-miR-6791-3p 0 1 0
chr19:3977494|3977888 hsa-miR-4716-3p 0 1 0
chr19:3977494|3977888 hsa-miR-6791-5p 0 1 0
chr19:3977494|3977888 hsa-miR-518e-5p 0 1 0
chr19:3977494|3977888 hsa-miR-519a-5p 0 1 0
chr19:3977494|3977888 hsa-miR-522-5p 0 1 0
chr19:3977494|3977888 hsa-miR-523-5p 0 1 0
chr19:3977494|3977888 hsa-miR-4722-3p 0 1 0
chr19:3977494|3977888 hsa-miR-6727-3p 0 1 0
chr19:3977494|3977888 hsa-miR-6829-3p 1 1 0
chr19:3977494|3977888 hsa-miR-10400-3p 1 0 0
chr19:3977494|3977888 hsa-miR-6751-3p 0 1 0
chr19:3977494|3977888 hsa-miR-4701-5p 0 1 0
chr19:3977494|3977888 hsa-miR-10394-5p 0 1 0
chr19:3977494|3977888 hsa-miR-329-3p 0 1 0
chr19:3977494|3977888 hsa-miR-3681-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:3977494|3977888
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MQDLAGGGQAAEVCPALDGGSPPPPGRTV
Nucleotide Sequence CTGCAGGACTTGGCAGGTGGAGGGCAAGCAGCCGAGGTGTGTCCGGCCCTTGACGGTGGCTCTCCCCCTCCCCCAGGGCGCACTGTGTGA

CircID chr19:3977494|3977888
ORF Type ORF2
Protein Length 89
Nucleotide Length 267
Protein Sequence MVLPPETETLMGPRRARPQVPLVETCRTWQVEGKQPRCVRPLTVALPLPQGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRC
Nucleotide Sequence ATGGTCCTGCCTCCCGAGACAGAGACCCTAATGGGGCCAAGGCGGGCAAGGCCCCAGGTCCCCCTGGTGGAGACCTGCAGGACTTGGCAGGTGGAGGGCAAGCAGCCGAGGTGTGTCCGGCCCTTGACGGTGGCTCTCCCCCTCCCCCAGGGCGCACTGTGTGAGGAGAACATGCGGGGTGTGCGCTTCGACGTCCACGACGTCACCCTGCACGCCGACGCCATCCACCGCGGAGGGGGCCAGATCATCCCCACAGCACGGCGCTGC

CircID chr19:3977494|3977888
ORF Type ORF3
Protein Length 71
Nucleotide Length 216
Protein Sequence MAPSAVDGVGVQGDVVDVEAHTPHVLLTQCALGEGESHRQGPDTPRLLALHLPSPAGLHQGDLGPCPPWPH
Nucleotide Sequence CTGGCCCCCTCCGCGGTGGATGGCGTCGGCGTGCAGGGTGACGTCGTGGACGTCGAAGCGCACACCCCGCATGTTCTCCTCACACAGTGCGCCCTGGGGGAGGGGGAGAGCCACCGTCAAGGGCCGGACACACCTCGGCTGCTTGCCCTCCACCTGCCAAGTCCTGCAGGTCTCCACCAGGGGGACCTGGGGCCTTGCCCGCCTTGGCCCCATTAG

CircID chr19:3977494|3977888
ORF Type ORF4
Protein Length 86
Nucleotide Length 261
Protein Sequence MIWPPPRWMASACRVTSWTSKRTPRMFSSHSAPWGRGRATVKGRTHLGCLPSTCQVLQVSTRGTWGLARLGPIRVSVSGGRTMRSL
Nucleotide Sequence ATGATCTGGCCCCCTCCGCGGTGGATGGCGTCGGCGTGCAGGGTGACGTCGTGGACGTCGAAGCGCACACCCCGCATGTTCTCCTCACACAGTGCGCCCTGGGGGAGGGGGAGAGCCACCGTCAAGGGCCGGACACACCTCGGCTGCTTGCCCTCCACCTGCCAAGTCCTGCAGGTCTCCACCAGGGGGACCTGGGGCCTTGCCCGCCTTGGCCCCATTAGGGTCTCTGTCTCGGGAGGCAGGACCATGAGGTCCCTCTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites