CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3980588|3980919
Strand +
CircType exon
Host Gene ENSG00000167658.14;
Algorism CIRI2;
Sequence CTGCCCTCCCCTGTGACGGCCCAGAAGTACCGCTGCGAGCTCCTGTACGAGGGGCCCCCGGACGACGAGGCTGCCATGGGTACGTGGTCCCGGTGGCCGGGCCCTGAGATGCAGCCGGATGACTTCCTGTTGCCCAAGGTTGTGGGTTGCAGGGTTCCAGAAGGCTGAGCTGCACTGGAATAAAGCTTGCGGGTTTTCTCTGTCCCTCAGGCATTAAAAGCTGTGACCCCAAAGGCCCTCTTATGATGTATATTTCCAAAATGGTGCCAACCTCCGACAAAGGTCGGTTCTACGCCTTTGGACGAGTCTTCTCGGGGCTGGTCTCCACTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3980588|3980919 hsa-miR-96-5p 0 0 1
chr19:3980588|3980919 hsa-miR-96-3p 0 0 1
chr19:3980588|3980919 hsa-miR-148a-5p 0 0 1
chr19:3980588|3980919 hsa-miR-148a-3p 0 0 1
chr19:3980588|3980919 hsa-miR-152-5p 0 0 1
chr19:3980588|3980919 hsa-miR-152-3p 0 0 1
chr19:3980588|3980919 hsa-miR-155-5p 0 0 1
chr19:3980588|3980919 hsa-miR-155-3p 0 0 1
chr19:3980588|3980919 hsa-miR-148b-5p 0 0 1
chr19:3980588|3980919 hsa-miR-148b-3p 0 0 1
chr19:3980588|3980919 hsa-miR-612 0 0 1
chr19:3980588|3980919 hsa-miR-635 0 0 1
chr19:3980588|3980919 hsa-miR-660-5p 0 0 1
chr19:3980588|3980919 hsa-miR-660-3p 0 0 1
chr19:3980588|3980919 hsa-miR-1271-5p 0 0 1
chr19:3980588|3980919 hsa-miR-1271-3p 0 0 1
chr19:3980588|3980919 hsa-miR-1301-5p 0 0 1
chr19:3980588|3980919 hsa-miR-1301-3p 0 0 1
chr19:3980588|3980919 hsa-miR-708-5p 0 0 1
chr19:3980588|3980919 hsa-miR-708-3p 0 0 1
chr19:3980588|3980919 hsa-miR-1237-5p 0 0 1
chr19:3980588|3980919 hsa-miR-1237-3p 0 0 1
chr19:3980588|3980919 hsa-miR-1299 0 1 1
chr19:3980588|3980919 hsa-miR-1253 0 0 1
chr19:3980588|3980919 hsa-miR-1266-5p 0 0 1
chr19:3980588|3980919 hsa-miR-1266-3p 0 0 1
chr19:3980588|3980919 hsa-miR-1825 0 0 1
chr19:3980588|3980919 hsa-miR-145-5p 0 0 1
chr19:3980588|3980919 hsa-miR-296-5p 0 0 1
chr19:3980588|3980919 hsa-miR-615-5p 0 0 1
chr19:3980588|3980919 hsa-miR-885-3p 0 0 1
chr19:3980588|3980919 hsa-miR-767-5p 0 0 1
chr19:3980588|3980919 hsa-miR-199a-5p 0 0 1
chr19:3980588|3980919 hsa-miR-28-5p 0 1 1
chr19:3980588|3980919 hsa-miR-513a-5p 0 1 1
chr19:3980588|3980919 hsa-miR-875-3p 0 0 1
chr19:3980588|3980919 hsa-miR-199b-5p 0 0 1
chr19:3980588|3980919 hsa-miR-220c 0 0 1
chr19:3980588|3980919 hsa-miR-1285 0 0 1
chr19:3980588|3980919 hsa-miR-516b 0 0 1
chr19:3980588|3980919 hsa-miR-1201 0 0 1
chr19:3980588|3980919 hsa-miR-499-3p 0 0 1
chr19:3980588|3980919 hsa-miR-365 0 0 1
chr19:3980588|3980919 hsa-miR-638 1 0 0
chr19:3980588|3980919 hsa-miR-762 1 0 0
chr19:3980588|3980919 hsa-miR-3916 1 0 0
chr19:3980588|3980919 hsa-miR-3135b 1 0 0
chr19:3980588|3980919 hsa-miR-4467 1 0 0
chr19:3980588|3980919 hsa-miR-4484 0 1 0
chr19:3980588|3980919 hsa-miR-1587 1 0 0
chr19:3980588|3980919 hsa-miR-3960 1 0 0
chr19:3980588|3980919 hsa-miR-3972 1 0 0
chr19:3980588|3980919 hsa-miR-4688 1 1 0
chr19:3980588|3980919 hsa-miR-4741 1 0 0
chr19:3980588|3980919 hsa-miR-8072 1 0 0
chr19:3980588|3980919 hsa-miR-12122 0 1 0
chr19:3980588|3980919 hsa-miR-12133 0 1 0
chr19:3980588|3980919 hsa-miR-4433a-3p 1 0 0
chr19:3980588|3980919 hsa-miR-6894-5p 1 0 0
chr19:3980588|3980919 hsa-miR-6854-5p 0 1 0
chr19:3980588|3980919 hsa-miR-139-3p 1 0 0
chr19:3980588|3980919 hsa-miR-4786-5p 0 1 0
chr19:3980588|3980919 hsa-miR-4722-5p 1 0 0
chr19:3980588|3980919 hsa-miR-6727-5p 1 1 0
chr19:3980588|3980919 hsa-miR-7845-5p 0 1 0
chr19:3980588|3980919 hsa-miR-4655-3p 0 1 0
chr19:3980588|3980919 hsa-miR-3126-5p 1 1 0
chr19:3980588|3980919 hsa-miR-5008-5p 1 0 0
chr19:3980588|3980919 hsa-miR-3127-5p 0 1 0
chr19:3980588|3980919 hsa-miR-6834-5p 0 1 0
chr19:3980588|3980919 hsa-miR-4787-5p 1 0 0
chr19:3980588|3980919 hsa-miR-6781-5p 1 0 0
chr19:3980588|3980919 hsa-miR-3189-3p 0 1 0
chr19:3980588|3980919 hsa-miR-423-5p 1 1 0
chr19:3980588|3980919 hsa-miR-4746-3p 1 0 0
chr19:3980588|3980919 hsa-miR-3614-3p 0 1 0
chr19:3980588|3980919 hsa-miR-3670 1 1 0
chr19:3980588|3980919 hsa-miR-3620-3p 0 1 0
chr19:3980588|3980919 hsa-miR-4520-3p 0 1 0
chr19:3980588|3980919 hsa-miR-4740-3p 0 1 0
chr19:3980588|3980919 hsa-miR-10400-5p 1 0 0
chr19:3980588|3980919 hsa-miR-6769a-5p 1 0 0
chr19:3980588|3980919 hsa-miR-6851-5p 1 0 0
chr19:3980588|3980919 hsa-miR-6722-3p 1 0 0
chr19:3980588|3980919 hsa-miR-6774-5p 0 1 0
chr19:3980588|3980919 hsa-miR-6875-5p 0 1 0
chr19:3980588|3980919 hsa-miR-3620-5p 1 0 0
chr19:3980588|3980919 hsa-miR-5189-5p 1 0 0
chr19:3980588|3980919 hsa-miR-4745-3p 0 1 0
chr19:3980588|3980919 hsa-miR-6848-5p 1 0 0
chr19:3980588|3980919 hsa-miR-6724-5p 1 0 0
chr19:3980588|3980919 hsa-miR-550a-3-5p 0 1 0
chr19:3980588|3980919 hsa-miR-550a-5p 1 1 0
chr19:3980588|3980919 hsa-miR-330-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:3980588|3980919
ORF Type ORF1
Protein Length 55
Nucleotide Length 168
Protein Sequence LPSPVTAQKYRCELLYEGPPDDEAAMGTWSRWPGPEMQPDDFLLPKVVGCRVPEG
Nucleotide Sequence CTGCCCTCCCCTGTGACGGCCCAGAAGTACCGCTGCGAGCTCCTGTACGAGGGGCCCCCGGACGACGAGGCTGCCATGGGTACGTGGTCCCGGTGGCCGGGCCCTGAGATGCAGCCGGATGACTTCCTGTTGCCCAAGGTTGTGGGTTGCAGGGTTCCAGAAGGCTGA
CircID chr19:3980588|3980919
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MPWVRGPGGRALRCSRMTSCCPRLWVAGFQKAELHWNKACGFSLSLRH
Nucleotide Sequence CTGCCATGGGTACGTGGTCCCGGTGGCCGGGCCCTGAGATGCAGCCGGATGACTTCCTGTTGCCCAAGGTTGTGGGTTGCAGGGTTCCAGAAGGCTGAGCTGCACTGGAATAAAGCTTGCGGGTTTTCTCTGTCCCTCAGGCATTAA
CircID chr19:3980588|3980919
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MQGSRRLSCTGIKLAGFLCPSGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTG
Nucleotide Sequence TTGCAGGGTTCCAGAAGGCTGAGCTGCACTGGAATAAAGCTTGCGGGTTTTCTCTGTCCCTCAGGCATTAAAAGCTGTGACCCCAAAGGCCCTCTTATGATGTATATTTCCAAAATGGTGCCAACCTCCGACAAAGGTCGGTTCTACGCCTTTGGACGAGTCTTCTCGGGGCTGGTCTCCACTGGC
CircID chr19:3980588|3980919
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MQPTTLGNRKSSGCISGPGHRDHVPMAASSSGGPSYRSSQRYFWAVTGEG
Nucleotide Sequence CTGCAACCCACAACCTTGGGCAACAGGAAGTCATCCGGCTGCATCTCAGGGCCCGGCCACCGGGACCACGTACCCATGGCAGCCTCGTCGTCCGGGGGCCCCTCGTACAGGAGCTCGCAGCGGTACTTCTGGGCCGTCACAGGGGAGGGC
CircID chr19:3980588|3980919
ORF Type ORF5
Protein Length 93
Nucleotide Length 279
Protein Sequence MSEVGTILEIYIIRGPLGSQLLMPEGQRKPASFIPVQLSLLEPCNPQPWATGSHPAASQGPATGTTYPWQPRRPGAPRTGARSGTSGPSQGRA
Nucleotide Sequence TTGTCGGAGGTTGGCACCATTTTGGAAATATACATCATAAGAGGGCCTTTGGGGTCACAGCTTTTAATGCCTGAGGGACAGAGAAAACCCGCAAGCTTTATTCCAGTGCAGCTCAGCCTTCTGGAACCCTGCAACCCACAACCTTGGGCAACAGGAAGTCATCCGGCTGCATCTCAGGGCCCGGCCACCGGGACCACGTACCCATGGCAGCCTCGTCGTCCGGGGGCCCCTCGTACAGGAGCTCGCAGCGGTACTTCTGGGCCGTCACAGGGGAGGGCA
CircID chr19:3980588|3980919
ORF Type ORF6
Protein Length 70
Nucleotide Length 210
Protein Sequence MRDRENPQALFQCSSAFWNPATHNLGQQEVIRLHLRARPPGPRTHGSLVVRGPLVQELAAVLLGRHRGGQ
Nucleotide Sequence CTGAGGGACAGAGAAAACCCGCAAGCTTTATTCCAGTGCAGCTCAGCCTTCTGGAACCCTGCAACCCACAACCTTGGGCAACAGGAAGTCATCCGGCTGCATCTCAGGGCCCGGCCACCGGGACCACGTACCCATGGCAGCCTCGTCGTCCGGGGGCCCCTCGTACAGGAGCTCGCAGCGGTACTTCTGGGCCGTCACAGGGGAGGGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab