CircRNA Information

General Information
circRNA Basic Information
CircID chr19:3982246|3982994
Strand -
CircType exon
Host Gene ENSG00000167658.14;
Algorism CIRI2;
Sequence CTGTCACCCCACAGCTTCTTCATCATGTCCTCTACTTTCTTGGCCCGCTCGGCAGGCCCCAACTGGCCCTCCCCCTTGGCGGCGAACTTGGCCACATACATCTCGGCAAACTGCTTCAGGGTGAAGGCCCACCCGTGGAGGCCAGACCCAAAGCCCACGGTACCGAGGACAGGATCGATCATGATGTTGCCCATGGGGCCGCTCTCGCCCTCGCCGTAGGTGGAGATGATGACGTTCACGTTCTCCACGATGCGCTGGAAAGTCTGGTAGAGCTCCTCGGGCTCCAGCTGCAGCTCCAGCAGGGCGCGGTCCATCTTGTTCATCATCAGCACAGGCTTGATGCGCTCGGCAATGGCCTGCCGCAGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:3982246|3982994 hsa-miR-370-5p 0 0 1
chr19:3982246|3982994 hsa-miR-370-3p 0 0 1
chr19:3982246|3982994 hsa-miR-433-5p 0 0 1
chr19:3982246|3982994 hsa-miR-433-3p 0 0 1
chr19:3982246|3982994 hsa-miR-412-5p 0 0 1
chr19:3982246|3982994 hsa-miR-412-3p 0 0 1
chr19:3982246|3982994 hsa-miR-558 0 0 1
chr19:3982246|3982994 hsa-miR-567 0 0 1
chr19:3982246|3982994 hsa-miR-598-5p 0 0 1
chr19:3982246|3982994 hsa-miR-598-3p 0 0 1
chr19:3982246|3982994 hsa-miR-608 0 0 1
chr19:3982246|3982994 hsa-miR-1301-5p 0 0 1
chr19:3982246|3982994 hsa-miR-1301-3p 0 0 1
chr19:3982246|3982994 hsa-miR-541-5p 0 0 1
chr19:3982246|3982994 hsa-miR-541-3p 0 0 1
chr19:3982246|3982994 hsa-miR-708-5p 0 0 1
chr19:3982246|3982994 hsa-miR-708-3p 0 0 1
chr19:3982246|3982994 hsa-miR-877-5p 0 0 1
chr19:3982246|3982994 hsa-miR-877-3p 0 0 1
chr19:3982246|3982994 hsa-miR-297 0 1 1
chr19:3982246|3982994 hsa-miR-663b 1 0 1
chr19:3982246|3982994 hsa-miR-1287-5p 0 0 1
chr19:3982246|3982994 hsa-miR-1287-3p 0 0 1
chr19:3982246|3982994 hsa-miR-1272 0 0 1
chr19:3982246|3982994 hsa-miR-491-5p 0 0 1
chr19:3982246|3982994 hsa-miR-299-3p 0 0 1
chr19:3982246|3982994 hsa-miR-193a-5p 0 0 1
chr19:3982246|3982994 hsa-miR-1184 0 1 1
chr19:3982246|3982994 hsa-miR-654-5p 0 0 1
chr19:3982246|3982994 hsa-miR-28-5p 0 1 1
chr19:3982246|3982994 hsa-miR-1207-3p 0 0 1
chr19:3982246|3982994 hsa-miR-342-5p 0 0 1
chr19:3982246|3982994 hsa-miR-369-5p 0 0 1
chr19:3982246|3982994 hsa-miR-542-3p 0 0 1
chr19:3982246|3982994 hsa-miR-151-5p 0 0 1
chr19:3982246|3982994 hsa-miR-571 1 0 0
chr19:3982246|3982994 hsa-miR-637 1 0 0
chr19:3982246|3982994 hsa-miR-638 1 0 0
chr19:3982246|3982994 hsa-miR-151b 0 1 0
chr19:3982246|3982994 hsa-miR-760 1 0 0
chr19:3982246|3982994 hsa-miR-1269a 0 1 0
chr19:3982246|3982994 hsa-miR-2861 1 1 0
chr19:3982246|3982994 hsa-miR-3125 1 0 0
chr19:3982246|3982994 hsa-miR-3139 0 1 0
chr19:3982246|3982994 hsa-miR-3141 1 0 0
chr19:3982246|3982994 hsa-miR-4271 1 0 0
chr19:3982246|3982994 hsa-miR-3621 1 0 0
chr19:3982246|3982994 hsa-miR-3916 1 0 0
chr19:3982246|3982994 hsa-miR-3135b 0 1 0
chr19:3982246|3982994 hsa-miR-4487 1 0 0
chr19:3982246|3982994 hsa-miR-4488 1 0 0
chr19:3982246|3982994 hsa-miR-4502 0 1 0
chr19:3982246|3982994 hsa-miR-1269b 0 1 0
chr19:3982246|3982994 hsa-miR-4534 1 0 0
chr19:3982246|3982994 hsa-miR-4647 1 1 0
chr19:3982246|3982994 hsa-miR-4651 1 0 0
chr19:3982246|3982994 hsa-miR-4663 1 0 0
chr19:3982246|3982994 hsa-miR-4706 1 0 0
chr19:3982246|3982994 hsa-miR-4739 1 0 0
chr19:3982246|3982994 hsa-miR-4791 1 0 0
chr19:3982246|3982994 hsa-miR-5047 0 1 0
chr19:3982246|3982994 hsa-miR-5698 0 1 0
chr19:3982246|3982994 hsa-miR-6069 1 0 0
chr19:3982246|3982994 hsa-miR-6075 1 0 0
chr19:3982246|3982994 hsa-miR-6081 1 0 0
chr19:3982246|3982994 hsa-miR-6088 1 0 0
chr19:3982246|3982994 hsa-miR-8075 1 0 0
chr19:3982246|3982994 hsa-miR-8088 0 1 0
chr19:3982246|3982994 hsa-miR-7155-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6809-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6822-3p 0 1 0
chr19:3982246|3982994 hsa-miR-486-5p 1 0 0
chr19:3982246|3982994 hsa-miR-3692-5p 0 1 0
chr19:3982246|3982994 hsa-miR-1227-5p 1 1 0
chr19:3982246|3982994 hsa-miR-7847-3p 1 1 0
chr19:3982246|3982994 hsa-miR-7154-3p 1 0 0
chr19:3982246|3982994 hsa-miR-1288-3p 1 0 0
chr19:3982246|3982994 hsa-miR-6793-5p 1 1 0
chr19:3982246|3982994 hsa-miR-6796-5p 0 1 0
chr19:3982246|3982994 hsa-miR-6798-5p 1 1 0
chr19:3982246|3982994 hsa-miR-6760-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6881-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6874-5p 0 1 0
chr19:3982246|3982994 hsa-miR-1226-5p 1 0 0
chr19:3982246|3982994 hsa-miR-4763-5p 0 1 0
chr19:3982246|3982994 hsa-miR-4640-5p 1 1 0
chr19:3982246|3982994 hsa-miR-3677-3p 1 0 0
chr19:3982246|3982994 hsa-miR-4732-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6749-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6847-5p 1 0 0
chr19:3982246|3982994 hsa-miR-361-5p 0 1 0
chr19:3982246|3982994 hsa-miR-149-3p 1 1 0
chr19:3982246|3982994 hsa-miR-6877-5p 1 0 0
chr19:3982246|3982994 hsa-miR-664b-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6811-3p 1 1 0
chr19:3982246|3982994 hsa-miR-1914-5p 1 0 0
chr19:3982246|3982994 hsa-miR-2277-5p 1 0 0
chr19:3982246|3982994 hsa-miR-3913-3p 0 1 0
chr19:3982246|3982994 hsa-miR-10400-5p 1 0 0
chr19:3982246|3982994 hsa-miR-1233-5p 1 0 0
chr19:3982246|3982994 hsa-miR-4763-3p 1 0 0
chr19:3982246|3982994 hsa-miR-6787-5p 1 1 0
chr19:3982246|3982994 hsa-miR-6816-5p 1 0 0
chr19:3982246|3982994 hsa-miR-1343-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6743-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6756-5p 1 0 0
chr19:3982246|3982994 hsa-miR-1249-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6779-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6797-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6879-5p 1 0 0
chr19:3982246|3982994 hsa-miR-7111-5p 1 0 0
chr19:3982246|3982994 hsa-miR-3620-5p 1 0 0
chr19:3982246|3982994 hsa-miR-10396b-5p 1 0 0
chr19:3982246|3982994 hsa-miR-1237-5p 1 0 0
chr19:3982246|3982994 hsa-miR-1909-3p 1 0 0
chr19:3982246|3982994 hsa-miR-328-5p 1 0 0
chr19:3982246|3982994 hsa-miR-4649-5p 1 1 0
chr19:3982246|3982994 hsa-miR-4726-5p 1 1 0
chr19:3982246|3982994 hsa-miR-6729-5p 1 1 0
chr19:3982246|3982994 hsa-miR-6846-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6848-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6858-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6883-5p 0 1 0
chr19:3982246|3982994 hsa-miR-6831-5p 1 1 0
chr19:3982246|3982994 hsa-miR-10394-3p 1 0 0
chr19:3982246|3982994 hsa-miR-10396b-3p 1 0 0
chr19:3982246|3982994 hsa-miR-6856-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6773-5p 1 0 0
chr19:3982246|3982994 hsa-miR-3116 1 0 0
chr19:3982246|3982994 hsa-miR-3679-5p 1 1 0
chr19:3982246|3982994 hsa-miR-4716-3p 0 1 0
chr19:3982246|3982994 hsa-miR-6785-5p 0 1 0
chr19:3982246|3982994 hsa-miR-6849-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6724-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6762-5p 1 0 0
chr19:3982246|3982994 hsa-miR-6893-3p 0 1 0
chr19:3982246|3982994 hsa-miR-10392-3p 1 0 0
chr19:3982246|3982994 hsa-miR-151a-5p 1 1 0
chr19:3982246|3982994 hsa-miR-5699-3p 1 0 0
chr19:3982246|3982994 hsa-miR-7157-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:3982246|3982994
ORF Type ORF1
Protein Length 72
Nucleotide Length 219
Protein Sequence LSPHSFFIMSSTFLARSAGPNWPSPLAANLATYISANCFRVKAHPWRPDPKPTVPRTGSIMMLPMGPLSPSP
Nucleotide Sequence CTGTCACCCCACAGCTTCTTCATCATGTCCTCTACTTTCTTGGCCCGCTCGGCAGGCCCCAACTGGCCCTCCCCCTTGGCGGCGAACTTGGCCACATACATCTCGGCAAACTGCTTCAGGGTGAAGGCCCACCCGTGGAGGCCAGACCCAAAGCCCACGGTACCGAGGACAGGATCGATCATGATGTTGCCCATGGGGCCGCTCTCGCCCTCGCCGTAG
CircID chr19:3982246|3982994
ORF Type ORF2
Protein Length 101
Nucleotide Length 303
Protein Sequence MALPLGGELGHIHLGKLLQGEGPPVEARPKAHGTEDRIDHDVAHGAALALAVGGDDDVHVLHDALESLVELLGLQLQLQQGAVHLVHHQHRLDALGNGLPQ
Nucleotide Sequence CTGGCCCTCCCCCTTGGCGGCGAACTTGGCCACATACATCTCGGCAAACTGCTTCAGGGTGAAGGCCCACCCGTGGAGGCCAGACCCAAAGCCCACGGTACCGAGGACAGGATCGATCATGATGTTGCCCATGGGGCCGCTCTCGCCCTCGCCGTAGGTGGAGATGATGACGTTCACGTTCTCCACGATGCGCTGGAAAGTCTGGTAGAGCTCCTCGGGCTCCAGCTGCAGCTCCAGCAGGGCGCGGTCCATCTTGTTCATCATCAGCACAGGCTTGATGCGCTCGGCAATGGCCTGCCGCAG
CircID chr19:3982246|3982994
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MPRCMWPSSPPRGRASWGLPSGPRK
Nucleotide Sequence TTGCCGAGATGTATGTGGCCAAGTTCGCCGCCAAGGGGGAGGGCCAGTTGGGGCCTGCCGAGCGGGCCAAGAAAGTAG
CircID chr19:3982246|3982994
ORF Type ORF4
Protein Length 121
Nucleotide Length 363
Protein Sequence LRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIVENVNVIISTYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGD
Nucleotide Sequence CTGCGGCAGGCCATTGCCGAGCGCATCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCATCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGATCGATCCTGTCCTCGGTACCGTGGGCTTTGGGTCTGGCCTCCACGGGTGGGCCTTCACCCTGAAGCAGTTTGCCGAGATGTATGTGGCCAAGTTCGCCGCCAAGGGGGAGGGCCAGTTGGGGCCTGCCGAGCGGGCCAAGAAAGTAGAGGACATGATGAAGAAGCTGTGGGGTGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab