CircRNA Information

General Information
circRNA Basic Information
CircID chr19:39971209|39972398
Strand +
CircType exon
Host Gene ENSG00000013275.6;
Algorism CIRI2;
Sequence CTCCAGGAACTCCAGCTCTTGCTGCAGCTTCTGCGAGCAGAGAGGGGACAGAAGGGGATGGCTCCAGACTTGCTGATCCAGAGAGTGGTGGAAAGTGGGGAAGAGTATGAGATGTCAGGTCCTGTGCAAGGTCTGGGTTGGGGGTCGAATGTACCTTGTAGCGGCTGTACAGGTCCTCCAGGTCCTCAGGCTCAGGGCCCAGGAAGGACAGGCCGGTCTGGGGCCGGGACACGGACAGTGCTGGGATCTCATCCTGAGCCTTCTCCACCAAGATGCCTATCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:39971209|39972398 hsa-miR-107 0 0 1
chr19:39971209|39972398 hsa-miR-181c-5p 0 0 1
chr19:39971209|39972398 hsa-miR-181c-3p 0 0 1
chr19:39971209|39972398 hsa-miR-326 0 0 1
chr19:39971209|39972398 hsa-miR-335-5p 0 0 1
chr19:39971209|39972398 hsa-miR-335-3p 0 0 1
chr19:39971209|39972398 hsa-miR-489-5p 0 0 1
chr19:39971209|39972398 hsa-miR-489-3p 0 0 1
chr19:39971209|39972398 hsa-miR-492 0 1 1
chr19:39971209|39972398 hsa-miR-181d-5p 0 0 1
chr19:39971209|39972398 hsa-miR-181d-3p 0 0 1
chr19:39971209|39972398 hsa-miR-545-5p 0 0 1
chr19:39971209|39972398 hsa-miR-545-3p 0 0 1
chr19:39971209|39972398 hsa-miR-551a 0 0 1
chr19:39971209|39972398 hsa-miR-551b-5p 0 0 1
chr19:39971209|39972398 hsa-miR-551b-3p 0 0 1
chr19:39971209|39972398 hsa-miR-619-5p 0 0 1
chr19:39971209|39972398 hsa-miR-619-3p 0 0 1
chr19:39971209|39972398 hsa-miR-624-5p 0 0 1
chr19:39971209|39972398 hsa-miR-624-3p 0 0 1
chr19:39971209|39972398 hsa-miR-631 0 0 1
chr19:39971209|39972398 hsa-miR-765 0 0 1
chr19:39971209|39972398 hsa-miR-298 0 1 1
chr19:39971209|39972398 hsa-miR-1234-3p 0 0 1
chr19:39971209|39972398 hsa-miR-1236-5p 0 0 1
chr19:39971209|39972398 hsa-miR-1236-3p 0 0 1
chr19:39971209|39972398 hsa-miR-1237-5p 0 0 1
chr19:39971209|39972398 hsa-miR-1237-3p 0 0 1
chr19:39971209|39972398 hsa-miR-1291 0 1 1
chr19:39971209|39972398 hsa-miR-1255a 0 0 1
chr19:39971209|39972398 hsa-miR-1234 0 0 1
chr19:39971209|39972398 hsa-miR-486-5p 1 1 1
chr19:39971209|39972398 hsa-miR-296-5p 0 0 1
chr19:39971209|39972398 hsa-miR-1224-5p 0 1 1
chr19:39971209|39972398 hsa-miR-1184 0 0 1
chr19:39971209|39972398 hsa-miR-767-3p 0 0 1
chr19:39971209|39972398 hsa-miR-125a-5p 0 1 1
chr19:39971209|39972398 hsa-miR-330-5p 0 0 1
chr19:39971209|39972398 hsa-miR-125b 0 0 1
chr19:39971209|39972398 hsa-miR-103 0 0 1
chr19:39971209|39972398 hsa-miR-1255b 0 0 1
chr19:39971209|39972398 hsa-miR-181a 0 0 1
chr19:39971209|39972398 hsa-miR-181b 0 0 1
chr19:39971209|39972398 hsa-miR-516b 0 0 1
chr19:39971209|39972398 hsa-miR-24 0 0 1
chr19:39971209|39972398 hsa-miR-638 1 0 0
chr19:39971209|39972398 hsa-miR-661 0 1 0
chr19:39971209|39972398 hsa-miR-760 0 1 0
chr19:39971209|39972398 hsa-miR-663b 1 0 0
chr19:39971209|39972398 hsa-miR-4303 0 1 0
chr19:39971209|39972398 hsa-miR-4254 1 1 0
chr19:39971209|39972398 hsa-miR-3661 0 1 0
chr19:39971209|39972398 hsa-miR-3684 0 1 0
chr19:39971209|39972398 hsa-miR-378g 0 1 0
chr19:39971209|39972398 hsa-miR-4516 1 1 0
chr19:39971209|39972398 hsa-miR-4531 0 1 0
chr19:39971209|39972398 hsa-miR-4656 1 0 0
chr19:39971209|39972398 hsa-miR-4751 1 1 0
chr19:39971209|39972398 hsa-miR-5100 1 0 0
chr19:39971209|39972398 hsa-miR-5703 0 1 0
chr19:39971209|39972398 hsa-miR-5706 0 1 0
chr19:39971209|39972398 hsa-miR-7976 0 1 0
chr19:39971209|39972398 hsa-miR-8083 1 1 0
chr19:39971209|39972398 hsa-miR-4700-3p 1 1 0
chr19:39971209|39972398 hsa-miR-4665-3p 1 0 0
chr19:39971209|39972398 hsa-miR-187-5p 1 0 0
chr19:39971209|39972398 hsa-miR-6880-5p 0 1 0
chr19:39971209|39972398 hsa-miR-6875-3p 0 1 0
chr19:39971209|39972398 hsa-miR-3189-5p 1 0 0
chr19:39971209|39972398 hsa-miR-7110-3p 1 0 0
chr19:39971209|39972398 hsa-miR-877-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6770-5p 0 1 0
chr19:39971209|39972398 hsa-miR-6735-3p 0 1 0
chr19:39971209|39972398 hsa-miR-3691-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6858-3p 1 0 0
chr19:39971209|39972398 hsa-miR-6884-3p 0 1 0
chr19:39971209|39972398 hsa-miR-1343-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6852-5p 0 1 0
chr19:39971209|39972398 hsa-miR-939-3p 0 1 0
chr19:39971209|39972398 hsa-miR-5088-5p 0 1 0
chr19:39971209|39972398 hsa-miR-1226-5p 0 1 0
chr19:39971209|39972398 hsa-miR-1247-5p 1 0 0
chr19:39971209|39972398 hsa-miR-1908-3p 1 0 0
chr19:39971209|39972398 hsa-miR-3667-3p 1 1 0
chr19:39971209|39972398 hsa-miR-3677-3p 1 0 0
chr19:39971209|39972398 hsa-miR-6749-5p 1 0 0
chr19:39971209|39972398 hsa-miR-4743-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6870-3p 1 0 0
chr19:39971209|39972398 hsa-miR-6743-3p 1 0 0
chr19:39971209|39972398 hsa-miR-6719-3p 0 1 0
chr19:39971209|39972398 hsa-miR-3944-5p 1 0 0
chr19:39971209|39972398 hsa-miR-6793-3p 0 1 0
chr19:39971209|39972398 hsa-miR-383-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6826-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6859-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6777-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6760-3p 0 1 0
chr19:39971209|39972398 hsa-miR-130b-5p 1 0 0
chr19:39971209|39972398 hsa-miR-6748-3p 0 1 0
chr19:39971209|39972398 hsa-miR-4433b-5p 1 0 0
chr19:39971209|39972398 hsa-miR-6846-3p 1 0 0
chr19:39971209|39972398 hsa-miR-6812-3p 1 0 0
chr19:39971209|39972398 hsa-miR-6729-3p 1 1 0
chr19:39971209|39972398 hsa-let-7a-2-3p 1 1 0
chr19:39971209|39972398 hsa-miR-6731-3p 1 0 0
chr19:39971209|39972398 hsa-let-7g-3p 0 1 0
chr19:39971209|39972398 hsa-miR-3127-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6866-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6780b-5p 1 1 0
chr19:39971209|39972398 hsa-miR-4725-3p 1 0 0
chr19:39971209|39972398 hsa-miR-4726-5p 1 0 0
chr19:39971209|39972398 hsa-miR-6724-5p 1 1 0
chr19:39971209|39972398 hsa-miR-6753-3p 1 0 0
chr19:39971209|39972398 hsa-miR-6756-3p 0 1 0
chr19:39971209|39972398 hsa-miR-10392-3p 1 1 0
chr19:39971209|39972398 hsa-miR-3622a-3p 0 1 0
chr19:39971209|39972398 hsa-miR-4723-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6511b-3p 1 0 0
chr19:39971209|39972398 hsa-miR-6769b-3p 0 1 0
chr19:39971209|39972398 hsa-miR-6783-3p 0 1 0
chr19:39971209|39972398 hsa-miR-1295b-5p 0 1 0
chr19:39971209|39972398 hsa-miR-6500-5p 1 1 0
chr19:39971209|39972398 hsa-miR-5699-3p 0 1 0
chr19:39971209|39972398 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:39971209|39972398
ORF Type ORF1
Protein Length 88
Nucleotide Length 264
Protein Sequence MLQLLRAERGQKGMAPDLLIQRVVESGEEYEMSGPVQGLGWGSNVPCSGCTGPPGPQAQGPGRTGRSGAGTRTVLGSHPEPSPPRCLS
Nucleotide Sequence TTGCTGCAGCTTCTGCGAGCAGAGAGGGGACAGAAGGGGATGGCTCCAGACTTGCTGATCCAGAGAGTGGTGGAAAGTGGGGAAGAGTATGAGATGTCAGGTCCTGTGCAAGGTCTGGGTTGGGGGTCGAATGTACCTTGTAGCGGCTGTACAGGTCCTCCAGGTCCTCAGGCTCAGGGCCCAGGAAGGACAGGCCGGTCTGGGGCCGGGACACGGACAGTGCTGGGATCTCATCCTGAGCCTTCTCCACCAAGATGCCTATCT

CircID chr19:39971209|39972398
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MRCQVLCKVWVGGRMYLVAAVQVLQVLRLRAQEGQAGLGPGHGQCWDLILSLLHQDAYL
Nucleotide Sequence ATGAGATGTCAGGTCCTGTGCAAGGTCTGGGTTGGGGGTCGAATGTACCTTGTAGCGGCTGTACAGGTCCTCCAGGTCCTCAGGCTCAGGGCCCAGGAAGGACAGGCCGGTCTGGGGCCGGGACACGGACAGTGCTGGGATCTCATCCTGAGCCTTCTCCACCAAGATGCCTATCTC

CircID chr19:39971209|39972398
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MYRSSRSSGSGPRKDRPVWGRDTDSAGISS
Nucleotide Sequence CTGTACAGGTCCTCCAGGTCCTCAGGCTCAGGGCCCAGGAAGGACAGGCCGGTCTGGGGCCGGGACACGGACAGTGCTGGGATCTCATCCTGA

CircID chr19:39971209|39972398
ORF Type ORF4
Protein Length 90
Nucleotide Length 270
Protein Sequence MVEKAQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKVHSTPNPDLAQDLTSHTLPHFPPLSGSASLEPSPSVPSLLAEAAARAGVPG
Nucleotide Sequence TTGGTGGAGAAGGCTCAGGATGAGATCCCAGCACTGTCCGTGTCCCGGCCCCAGACCGGCCTGTCCTTCCTGGGCCCTGAGCCTGAGGACCTGGAGGACCTGTACAGCCGCTACAAGGTACATTCGACCCCCAACCCAGACCTTGCACAGGACCTGACATCTCATACTCTTCCCCACTTTCCACCACTCTCTGGATCAGCAAGTCTGGAGCCATCCCCTTCTGTCCCCTCTCTGCTCGCAGAAGCTGCAGCAAGAGCTGGAGTTCCTGGA

CircID chr19:39971209|39972398
ORF Type ORF5
Protein Length 45
Nucleotide Length 138
Protein Sequence MRSQHCPCPGPRPACPSWALSLRTWRTCTAATRYIRPPTQTLHRT
Nucleotide Sequence ATGAGATCCCAGCACTGTCCGTGTCCCGGCCCCAGACCGGCCTGTCCTTCCTGGGCCCTGAGCCTGAGGACCTGGAGGACCTGTACAGCCGCTACAAGGTACATTCGACCCCCAACCCAGACCTTGCACAGGACCTGA

CircID chr19:39971209|39972398
ORF Type ORF6
Protein Length 27
Nucleotide Length 81
Protein Sequence MDQQVWSHPLLSPLCSQKLQQELEFLE
Nucleotide Sequence CTGGATCAGCAAGTCTGGAGCCATCCCCTTCTGTCCCCTCTCTGCTCGCAGAAGCTGCAGCAAGAGCTGGAGTTCCTGGAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites