CircRNA Information

General Information
circRNA Basic Information
CircID chr19:40580374|40580597
Strand +
CircType exon
Host Gene ENSG00000160410.13;
Algorism CIRI2;
Sequence CAGGCGCACCATCCCCGGCTCCTCAGGTTGTCCTTGAGGGGAAGAGTAGGGATCAGAAGAGGGTCACAGGGACCCCACAGCTGCCCCAACCTTCCACGAGATAGAAACGTACCTGAGGGTGAGGGAGGGGTTTTCTCATCCAGCATTCGGCCCAGCAGCCCTGCATTGCCAAGGTTGGGGGGCATCGTGTTGCTCCGTCGGACAGGGGCTGGCCGTCCTCCTAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:40580374|40580597 hsa-miR-182-5p 0 0 1
chr19:40580374|40580597 hsa-miR-182-3p 0 0 1
chr19:40580374|40580597 hsa-miR-504-5p 0 0 1
chr19:40580374|40580597 hsa-miR-504-3p 0 0 1
chr19:40580374|40580597 hsa-miR-539-5p 0 0 1
chr19:40580374|40580597 hsa-miR-539-3p 0 0 1
chr19:40580374|40580597 hsa-miR-675-5p 0 0 1
chr19:40580374|40580597 hsa-miR-675-3p 0 0 1
chr19:40580374|40580597 hsa-miR-1236-5p 0 0 1
chr19:40580374|40580597 hsa-miR-1236-3p 0 0 1
chr19:40580374|40580597 hsa-miR-1287-5p 0 0 1
chr19:40580374|40580597 hsa-miR-1287-3p 0 0 1
chr19:40580374|40580597 hsa-miR-1255a 0 0 1
chr19:40580374|40580597 hsa-miR-491-5p 0 0 1
chr19:40580374|40580597 hsa-miR-486-3p 0 1 1
chr19:40580374|40580597 hsa-miR-615-5p 0 1 1
chr19:40580374|40580597 hsa-miR-542-5p 0 0 1
chr19:40580374|40580597 hsa-miR-339-5p 1 1 1
chr19:40580374|40580597 hsa-miR-1274a 0 0 1
chr19:40580374|40580597 hsa-miR-1274b 0 0 1
chr19:40580374|40580597 hsa-miR-1255b 0 0 1
chr19:40580374|40580597 hsa-miR-663a 1 0 0
chr19:40580374|40580597 hsa-miR-762 1 0 0
chr19:40580374|40580597 hsa-miR-940 1 0 0
chr19:40580374|40580597 hsa-miR-1913 1 0 0
chr19:40580374|40580597 hsa-miR-3196 1 0 0
chr19:40580374|40580597 hsa-miR-4260 0 1 0
chr19:40580374|40580597 hsa-miR-3665 1 0 0
chr19:40580374|40580597 hsa-miR-4498 1 0 0
chr19:40580374|40580597 hsa-miR-1587 1 0 0
chr19:40580374|40580597 hsa-miR-3972 1 1 0
chr19:40580374|40580597 hsa-miR-4656 1 0 0
chr19:40580374|40580597 hsa-miR-4689 0 1 0
chr19:40580374|40580597 hsa-miR-4739 1 0 0
chr19:40580374|40580597 hsa-miR-6132 1 1 0
chr19:40580374|40580597 hsa-miR-6860 1 0 0
chr19:40580374|40580597 hsa-miR-8089 1 1 0
chr19:40580374|40580597 hsa-miR-11400 0 1 0
chr19:40580374|40580597 hsa-miR-134-3p 0 1 0
chr19:40580374|40580597 hsa-miR-4433b-3p 1 0 0
chr19:40580374|40580597 hsa-miR-92a-1-5p 0 1 0
chr19:40580374|40580597 hsa-miR-212-5p 0 1 0
chr19:40580374|40580597 hsa-miR-6894-5p 1 0 0
chr19:40580374|40580597 hsa-miR-210-5p 0 1 0
chr19:40580374|40580597 hsa-miR-3692-5p 0 1 0
chr19:40580374|40580597 hsa-miR-7114-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6089 1 0 0
chr19:40580374|40580597 hsa-miR-1225-3p 1 0 0
chr19:40580374|40580597 hsa-miR-6880-5p 1 0 0
chr19:40580374|40580597 hsa-miR-4728-3p 1 0 0
chr19:40580374|40580597 hsa-miR-423-3p 1 0 0
chr19:40580374|40580597 hsa-miR-877-3p 0 1 0
chr19:40580374|40580597 hsa-miR-6829-5p 0 1 0
chr19:40580374|40580597 hsa-miR-3190-3p 0 1 0
chr19:40580374|40580597 hsa-miR-1224-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6858-3p 1 0 0
chr19:40580374|40580597 hsa-miR-939-3p 1 0 0
chr19:40580374|40580597 hsa-miR-6717-5p 0 1 0
chr19:40580374|40580597 hsa-miR-146b-3p 0 1 0
chr19:40580374|40580597 hsa-miR-6769a-3p 1 1 0
chr19:40580374|40580597 hsa-miR-6877-5p 1 1 0
chr19:40580374|40580597 hsa-miR-6887-3p 0 1 0
chr19:40580374|40580597 hsa-miR-2276-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6826-3p 0 1 0
chr19:40580374|40580597 hsa-miR-4749-3p 1 0 0
chr19:40580374|40580597 hsa-miR-3192-3p 0 1 0
chr19:40580374|40580597 hsa-miR-6734-3p 1 1 0
chr19:40580374|40580597 hsa-miR-6816-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6775-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6743-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6756-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6722-3p 1 0 0
chr19:40580374|40580597 hsa-miR-3620-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6836-5p 0 1 0
chr19:40580374|40580597 hsa-miR-10396b-5p 1 0 0
chr19:40580374|40580597 hsa-miR-1237-5p 1 0 0
chr19:40580374|40580597 hsa-miR-1909-3p 1 0 0
chr19:40580374|40580597 hsa-miR-449c-5p 1 0 0
chr19:40580374|40580597 hsa-miR-4632-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6858-5p 0 1 0
chr19:40580374|40580597 hsa-miR-3940-5p 1 0 0
chr19:40580374|40580597 hsa-miR-4665-5p 1 0 0
chr19:40580374|40580597 hsa-miR-6819-3p 1 0 0
chr19:40580374|40580597 hsa-miR-6771-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:40580374|40580597
ORF Type ORF1
Protein Length 65
Nucleotide Length 195
Protein Sequence MSLRGRVGIRRGSQGPHSCPNLPRDRNVPEGEGGVFSSSIRPSSPALPRLGGIVLLRRTGAGRPP
Nucleotide Sequence TTGTCCTTGAGGGGAAGAGTAGGGATCAGAAGAGGGTCACAGGGACCCCACAGCTGCCCCAACCTTCCACGAGATAGAAACGTACCTGAGGGTGAGGGAGGGGTTTTCTCATCCAGCATTCGGCCCAGCAGCCCTGCATTGCCAAGGTTGGGGGGCATCGTGTTGCTCCGTCGGACAGGGGCTGGCCGTCCTCCT
CircID chr19:40580374|40580597
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MRVREGFSHPAFGPAALHCQGWGASCCSVGQGLAVLL
Nucleotide Sequence CTGAGGGTGAGGGAGGGGTTTTCTCATCCAGCATTCGGCCCAGCAGCCCTGCATTGCCAAGGTTGGGGGGCATCGTGTTGCTCCGTCGGACAGGGGCTGGCCGTCCTCCTA
CircID chr19:40580374|40580597
ORF Type ORF3
Protein Length 61
Nucleotide Length 183
Protein Sequence MPPNLGNAGLLGRMLDEKTPPSPSGTFLSRGRLGQLWGPCDPLLIPTLPLKDNLRSRGWCA
Nucleotide Sequence ATGCCCCCCAACCTTGGCAATGCAGGGCTGCTGGGCCGAATGCTGGATGAGAAAACCCCTCCCTCACCCTCAGGTACGTTTCTATCTCGTGGAAGGTTGGGGCAGCTGTGGGGTCCCTGTGACCCTCTTCTGATCCCTACTCTTCCCCTCAAGGACAACCTGAGGAGCCGGGGATGGTGCGCC
CircID chr19:40580374|40580597
ORF Type ORF4
Protein Length 50
Nucleotide Length 153
Protein Sequence MSDGATRCPPTLAMQGCWAECWMRKPLPHPQVRFYLVEGWGSCGVPVTLF
Nucleotide Sequence CTGTCCGACGGAGCAACACGATGCCCCCCAACCTTGGCAATGCAGGGCTGCTGGGCCGAATGCTGGATGAGAAAACCCCTCCCTCACCCTCAGGTACGTTTCTATCTCGTGGAAGGTTGGGGCAGCTGTGGGGTCCCTGTGACCCTCTTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab