CircRNA Information

General Information
circRNA Basic Information
CircID chr19:40608313|40608516
Strand -
CircType exon
Host Gene ENSG00000090006.16;
Algorism CIRI2;
Sequence CCCGAGTGTCACTCAGCCAGCCTCGTACCCTGCCAGCCACCTCTCGGCCATCTGCAGGTGAGCTGGCTCTGGCAGAAGTGGGTGCCATCTTCAAGGGGCTGCCCCAGCCCCATAGTGAAAGGAGGCAAGAGAGGATTTGGGCTCCACTCGTTGATACCCCTTCTTTATCAGGCTTTCTGCCCACCCATCGCCTGGAGCCCCGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:40608313|40608516 hsa-miR-183-5p 0 0 1
chr19:40608313|40608516 hsa-miR-183-3p 0 0 1
chr19:40608313|40608516 hsa-miR-186-5p 0 0 1
chr19:40608313|40608516 hsa-miR-186-3p 0 0 1
chr19:40608313|40608516 hsa-miR-541-5p 0 0 1
chr19:40608313|40608516 hsa-miR-541-3p 0 0 1
chr19:40608313|40608516 hsa-miR-1293 0 0 1
chr19:40608313|40608516 hsa-miR-486-3p 0 1 1
chr19:40608313|40608516 hsa-miR-485-5p 1 1 1
chr19:40608313|40608516 hsa-miR-654-5p 0 1 1
chr19:40608313|40608516 hsa-miR-1207-5p 1 1 1
chr19:40608313|40608516 hsa-miR-1201 0 0 1
chr19:40608313|40608516 hsa-miR-762 1 1 0
chr19:40608313|40608516 hsa-miR-3132 1 0 0
chr19:40608313|40608516 hsa-miR-3147 1 0 0
chr19:40608313|40608516 hsa-miR-3154 0 1 0
chr19:40608313|40608516 hsa-miR-4426 0 1 0
chr19:40608313|40608516 hsa-miR-4478 1 0 0
chr19:40608313|40608516 hsa-miR-4487 1 0 0
chr19:40608313|40608516 hsa-miR-4498 1 1 0
chr19:40608313|40608516 hsa-miR-1587 1 0 0
chr19:40608313|40608516 hsa-miR-4635 0 1 0
chr19:40608313|40608516 hsa-miR-4647 0 1 0
chr19:40608313|40608516 hsa-miR-4651 1 0 0
chr19:40608313|40608516 hsa-miR-4780 0 1 0
chr19:40608313|40608516 hsa-miR-5090 1 0 0
chr19:40608313|40608516 hsa-miR-5787 1 1 0
chr19:40608313|40608516 hsa-miR-6085 0 1 0
chr19:40608313|40608516 hsa-miR-6745 1 0 0
chr19:40608313|40608516 hsa-miR-7150 0 1 0
chr19:40608313|40608516 hsa-miR-8077 0 1 0
chr19:40608313|40608516 hsa-miR-12115 0 1 0
chr19:40608313|40608516 hsa-miR-4731-5p 0 1 0
chr19:40608313|40608516 hsa-miR-671-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6861-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6089 1 0 0
chr19:40608313|40608516 hsa-miR-6741-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6727-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6759-5p 1 1 0
chr19:40608313|40608516 hsa-miR-197-5p 1 0 0
chr19:40608313|40608516 hsa-miR-185-3p 1 1 0
chr19:40608313|40608516 hsa-miR-23a-5p 1 1 0
chr19:40608313|40608516 hsa-miR-6782-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6858-3p 0 1 0
chr19:40608313|40608516 hsa-miR-4436b-5p 0 1 0
chr19:40608313|40608516 hsa-miR-5187-3p 0 1 0
chr19:40608313|40608516 hsa-miR-6784-5p 1 1 0
chr19:40608313|40608516 hsa-miR-6809-3p 0 1 0
chr19:40608313|40608516 hsa-miR-7111-3p 1 1 0
chr19:40608313|40608516 hsa-miR-4446-3p 1 0 0
chr19:40608313|40608516 hsa-miR-6717-5p 0 1 0
chr19:40608313|40608516 hsa-miR-6738-3p 0 1 0
chr19:40608313|40608516 hsa-miR-3675-5p 0 1 0
chr19:40608313|40608516 hsa-miR-4763-3p 1 1 0
chr19:40608313|40608516 hsa-miR-6769b-5p 1 1 0
chr19:40608313|40608516 hsa-miR-6778-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6787-5p 1 1 0
chr19:40608313|40608516 hsa-miR-6865-5p 0 1 0
chr19:40608313|40608516 hsa-miR-6775-5p 1 0 0
chr19:40608313|40608516 hsa-miR-5001-5p 1 1 0
chr19:40608313|40608516 hsa-miR-6756-5p 1 1 0
chr19:40608313|40608516 hsa-miR-6769a-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6815-5p 0 1 0
chr19:40608313|40608516 hsa-miR-6722-3p 1 0 0
chr19:40608313|40608516 hsa-miR-328-5p 1 0 0
chr19:40608313|40608516 hsa-miR-4649-5p 1 0 0
chr19:40608313|40608516 hsa-miR-4745-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6729-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6735-5p 1 0 0
chr19:40608313|40608516 hsa-miR-4758-5p 1 0 0
chr19:40608313|40608516 hsa-miR-6791-3p 0 1 0
chr19:40608313|40608516 hsa-miR-6766-5p 0 1 0
chr19:40608313|40608516 hsa-miR-9851-5p 0 1 0
chr19:40608313|40608516 hsa-miR-10400-3p 1 0 0
chr19:40608313|40608516 hsa-miR-4723-3p 0 1 0
chr19:40608313|40608516 hsa-miR-6769b-3p 0 1 0
chr19:40608313|40608516 hsa-miR-6884-5p 0 1 0
chr19:40608313|40608516 hsa-miR-6744-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:40608313|40608516
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MQVSWLWQKWVPSSRGCPSPIVKGGKRGFGLHSLIPLLYQAFCPPIAWSPG
Nucleotide Sequence CTGCAGGTGAGCTGGCTCTGGCAGAAGTGGGTGCCATCTTCAAGGGGCTGCCCCAGCCCCATAGTGAAAGGAGGCAAGAGAGGATTTGGGCTCCACTCGTTGATACCCCTTCTTTATCAGGCTTTCTGCCCACCCATCGCCTGGAGCCCCGGC
CircID chr19:40608313|40608516
ORF Type ORF2
Protein Length 58
Nucleotide Length 174
Protein Sequence MPATSRPSAGELALAEVGAIFKGLPQPHSERRQERIWAPLVDTPSLSGFLPTHRLEPR
Nucleotide Sequence CTGCCAGCCACCTCTCGGCCATCTGCAGGTGAGCTGGCTCTGGCAGAAGTGGGTGCCATCTTCAAGGGGCTGCCCCAGCCCCATAGTGAAAGGAGGCAAGAGAGGATTTGGGCTCCACTCGTTGATACCCCTTCTTTATCAGGCTTTCTGCCCACCCATCGCCTGGAGCCCCGG
CircID chr19:40608313|40608516
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MIKKGYQRVEPKSSLASFHYGAGAAP
Nucleotide Sequence CTGATAAAGAAGGGGTATCAACGAGTGGAGCCCAAATCCTCTCTTGCCTCCTTTCACTATGGGGCTGGGGCAGCCCCTTGA
CircID chr19:40608313|40608516
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MPPFTMGLGQPLEDGTHFCQSQLTCRWPRGGWQGTRLAE
Nucleotide Sequence TTGCCTCCTTTCACTATGGGGCTGGGGCAGCCCCTTGAAGATGGCACCCACTTCTGCCAGAGCCAGCTCACCTGCAGATGGCCGAGAGGTGGCTGGCAGGGTACGAGGCTGGCTGAGTGA
CircID chr19:40608313|40608516
ORF Type ORF5
Protein Length 31
Nucleotide Length 93
Protein Sequence MKMAPTSARASSPADGREVAGRVRGWLSDTR
Nucleotide Sequence TTGAAGATGGCACCCACTTCTGCCAGAGCCAGCTCACCTGCAGATGGCCGAGAGGTGGCTGGCAGGGTACGAGGCTGGCTGAGTGACACTCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab