CircRNA Information

General Information
circRNA Basic Information
CircID chr19:40687387|40687585
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCAGATCGCAGATACACAGAAACAGTCCCAAACCCAGAAAGCTGCCACTGTAAACATCTGGCCGCATATTCATGTTCGGACACACACAGTCTCTACTACAGACATTTGTCCACATACATGCAGCATGTCCTGGCCCACTCAGTTCCCACCGCAGACACCTGGTCACACCACCCACTGAAATTTGGTCACTTCCACATT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:40687387|40687585 hsa-miR-346 0 0 1
chr19:40687387|40687585 hsa-miR-452-5p 0 0 1
chr19:40687387|40687585 hsa-miR-452-3p 0 0 1
chr19:40687387|40687585 hsa-miR-567 0 0 1
chr19:40687387|40687585 hsa-miR-629-5p 0 0 1
chr19:40687387|40687585 hsa-miR-629-3p 0 0 1
chr19:40687387|40687585 hsa-miR-632 0 0 1
chr19:40687387|40687585 hsa-miR-411-5p 0 0 1
chr19:40687387|40687585 hsa-miR-411-3p 0 0 1
chr19:40687387|40687585 hsa-miR-892a 0 0 1
chr19:40687387|40687585 hsa-miR-297 0 1 1
chr19:40687387|40687585 hsa-miR-1293 0 1 1
chr19:40687387|40687585 hsa-miR-1292-5p 0 0 1
chr19:40687387|40687585 hsa-miR-1292-3p 0 0 1
chr19:40687387|40687585 hsa-miR-885-3p 1 0 1
chr19:40687387|40687585 hsa-miR-299-3p 0 0 1
chr19:40687387|40687585 hsa-miR-654-3p 0 0 1
chr19:40687387|40687585 hsa-miR-582-5p 0 0 1
chr19:40687387|40687585 hsa-miR-1302 0 0 1
chr19:40687387|40687585 hsa-miR-513a-3p 0 0 1
chr19:40687387|40687585 hsa-miR-608 1 0 0
chr19:40687387|40687585 hsa-miR-658 1 0 0
chr19:40687387|40687585 hsa-miR-1231 1 0 0
chr19:40687387|40687585 hsa-miR-1538 1 0 0
chr19:40687387|40687585 hsa-miR-3138 1 1 0
chr19:40687387|40687585 hsa-miR-4314 1 0 0
chr19:40687387|40687585 hsa-miR-4436a 0 1 0
chr19:40687387|40687585 hsa-miR-4471 0 1 0
chr19:40687387|40687585 hsa-miR-3689c 1 0 0
chr19:40687387|40687585 hsa-miR-4481 0 1 0
chr19:40687387|40687585 hsa-miR-4491 1 1 0
chr19:40687387|40687585 hsa-miR-4651 1 0 0
chr19:40687387|40687585 hsa-miR-4657 1 1 0
chr19:40687387|40687585 hsa-miR-4669 1 1 0
chr19:40687387|40687585 hsa-miR-4734 1 0 0
chr19:40687387|40687585 hsa-miR-4736 1 0 0
chr19:40687387|40687585 hsa-miR-4748 1 0 0
chr19:40687387|40687585 hsa-miR-5093 1 0 0
chr19:40687387|40687585 hsa-miR-6069 1 1 0
chr19:40687387|40687585 hsa-miR-6127 1 0 0
chr19:40687387|40687585 hsa-miR-8052 1 0 0
chr19:40687387|40687585 hsa-miR-8072 1 0 0
chr19:40687387|40687585 hsa-miR-8089 1 0 0
chr19:40687387|40687585 hsa-miR-10226 1 1 0
chr19:40687387|40687585 hsa-miR-92a-2-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6861-5p 1 0 0
chr19:40687387|40687585 hsa-miR-205-3p 0 1 0
chr19:40687387|40687585 hsa-miR-6799-5p 1 0 0
chr19:40687387|40687585 hsa-miR-3934-5p 1 0 0
chr19:40687387|40687585 hsa-miR-1227-5p 1 0 0
chr19:40687387|40687585 hsa-miR-4786-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6089 1 0 0
chr19:40687387|40687585 hsa-miR-6867-5p 0 1 0
chr19:40687387|40687585 hsa-miR-3677-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6741-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6759-5p 1 0 0
chr19:40687387|40687585 hsa-miR-7108-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6716-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6871-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6748-5p 1 1 0
chr19:40687387|40687585 hsa-miR-6793-5p 1 0 0
chr19:40687387|40687585 hsa-miR-3190-3p 1 0 0
chr19:40687387|40687585 hsa-miR-6786-5p 1 1 0
chr19:40687387|40687585 hsa-miR-223-5p 0 1 0
chr19:40687387|40687585 hsa-miR-4783-3p 1 0 0
chr19:40687387|40687585 hsa-miR-4640-5p 1 1 0
chr19:40687387|40687585 hsa-miR-1228-5p 1 0 0
chr19:40687387|40687585 hsa-miR-92b-5p 1 0 0
chr19:40687387|40687585 hsa-miR-7854-3p 1 0 0
chr19:40687387|40687585 hsa-miR-6501-5p 1 0 0
chr19:40687387|40687585 hsa-miR-4743-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6800-5p 1 0 0
chr19:40687387|40687585 hsa-miR-574-5p 1 0 0
chr19:40687387|40687585 hsa-miR-654-5p 1 0 0
chr19:40687387|40687585 hsa-miR-873-3p 0 1 0
chr19:40687387|40687585 hsa-miR-5000-3p 0 1 0
chr19:40687387|40687585 hsa-miR-4746-3p 1 0 0
chr19:40687387|40687585 hsa-miR-6808-3p 0 1 0
chr19:40687387|40687585 hsa-miR-1233-5p 1 0 0
chr19:40687387|40687585 hsa-miR-3689b-3p 1 0 0
chr19:40687387|40687585 hsa-miR-6769b-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6778-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6865-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6726-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6752-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6756-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6769a-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6819-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6751-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6797-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6862-5p 1 0 0
chr19:40687387|40687585 hsa-miR-3689a-3p 1 0 0
chr19:40687387|40687585 hsa-miR-4726-5p 0 1 0
chr19:40687387|40687585 hsa-miR-4745-5p 1 1 0
chr19:40687387|40687585 hsa-miR-4749-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6729-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6846-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6887-5p 1 0 0
chr19:40687387|40687585 hsa-miR-939-5p 1 0 0
chr19:40687387|40687585 hsa-miR-4758-5p 1 0 0
chr19:40687387|40687585 hsa-miR-3940-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6736-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6766-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6849-5p 1 0 0
chr19:40687387|40687585 hsa-miR-6724-5p 1 0 0
chr19:40687387|40687585 hsa-miR-3913-5p 1 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:40687387|40687585
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MFGHTQSLLQTFVHIHAACPGPLSSHRRHLVTPPTEIWSLPH
Nucleotide Sequence ATGTTCGGACACACACAGTCTCTACTACAGACATTTGTCCACATACATGCAGCATGTCCTGGCCCACTCAGTTCCCACCGCAGACACCTGGTCACACCACCCACTGAAATTTGGTCACTTCCACAT
CircID chr19:40687387|40687585
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MAAYSCSDTHSLYYRHLSTYMQHVLAHSVPTADTWSHHPLKFGHFHI
Nucleotide Sequence CTGGCCGCATATTCATGTTCGGACACACACAGTCTCTACTACAGACATTTGTCCACATACATGCAGCATGTCCTGGCCCACTCAGTTCCCACCGCAGACACCTGGTCACACCACCCACTGAAATTTGGTCACTTCCACATT
CircID chr19:40687387|40687585
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MCVSEHEYAARCLQWQLSGFGTVSVYLRSE
Nucleotide Sequence CTGTGTGTGTCCGAACATGAATATGCGGCCAGATGTTTACAGTGGCAGCTTTCTGGGTTTGGGACTGTTTCTGTGTATCTGCGATCTGAG
CircID chr19:40687387|40687585
ORF Type ORF4
Protein Length 51
Nucleotide Length 153
Protein Sequence MRWELSGPGHAACMWTNVCSRDCVCPNMNMRPDVYSGSFLGLGLFLCICDL
Nucleotide Sequence CTGCGGTGGGAACTGAGTGGGCCAGGACATGCTGCATGTATGTGGACAAATGTCTGTAGTAGAGACTGTGTGTGTCCGAACATGAATATGCGGCCAGATGTTTACAGTGGCAGCTTTCTGGGTTTGGGACTGTTTCTGTGTATCTGCGATCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab