CircRNA Information

General Information
circRNA Basic Information
CircID chr19:40944915|40945071
Strand +
CircType exon
Host Gene ENSG00000256612.6;
Algorism CIRI2;
Sequence TTGCCCAAGTTCCTGCTTGCCCAGATGTGCCTTTGGGAATGTCATCTTCTTTCTCAAGCCTCCTTACAGGGTTGTAGTGAAGATGGAAGGGGATAAGGCAGGTGAAGCAATTGGAATATATTAAGTGCTCAATTAATAAGGACCTGTCATTTTTTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:40944915|40945071 hsa-miR-10a-5p 0 0 1
chr19:40944915|40945071 hsa-miR-10a-3p 0 0 1
chr19:40944915|40945071 hsa-miR-10b-5p 0 0 1
chr19:40944915|40945071 hsa-miR-10b-3p 0 0 1
chr19:40944915|40945071 hsa-miR-412-5p 0 0 1
chr19:40944915|40945071 hsa-miR-412-3p 0 0 1
chr19:40944915|40945071 hsa-miR-506-5p 0 0 1
chr19:40944915|40945071 hsa-miR-506-3p 0 0 1
chr19:40944915|40945071 hsa-miR-539-5p 0 0 1
chr19:40944915|40945071 hsa-miR-539-3p 0 0 1
chr19:40944915|40945071 hsa-miR-580-5p 0 0 1
chr19:40944915|40945071 hsa-miR-580-3p 0 0 1
chr19:40944915|40945071 hsa-miR-612 0 0 1
chr19:40944915|40945071 hsa-miR-635 0 0 1
chr19:40944915|40945071 hsa-miR-889-5p 0 0 1
chr19:40944915|40945071 hsa-miR-889-3p 0 0 1
chr19:40944915|40945071 hsa-miR-873-5p 0 0 1
chr19:40944915|40945071 hsa-miR-873-3p 0 0 1
chr19:40944915|40945071 hsa-miR-302f 0 0 1
chr19:40944915|40945071 hsa-miR-124 0 0 1
chr19:40944915|40945071 hsa-miR-1300 0 0 1
chr19:40944915|40945071 hsa-miR-1285 0 0 1
chr19:40944915|40945071 hsa-miR-3915 0 1 0
chr19:40944915|40945071 hsa-miR-3977 0 1 0
chr19:40944915|40945071 hsa-miR-9900 0 1 0
chr19:40944915|40945071 hsa-miR-6747-3p 0 1 0
chr19:40944915|40945071 hsa-miR-4695-5p 0 1 0
chr19:40944915|40945071 hsa-miR-6837-3p 0 1 0
chr19:40944915|40945071 hsa-miR-6792-5p 0 1 0
chr19:40944915|40945071 hsa-miR-1298-3p 0 1 0
chr19:40944915|40945071 hsa-miR-6754-3p 0 1 0
chr19:40944915|40945071 hsa-miR-186-3p 0 1 0
chr19:40944915|40945071 hsa-miR-5189-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:40944915|40945071
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence LPKFLLAQMCLWECHLLSQASLQGCSEDGRG
Nucleotide Sequence TTGCCCAAGTTCCTGCTTGCCCAGATGTGCCTTTGGGAATGTCATCTTCTTTCTCAAGCCTCCTTACAGGGTTGTAGTGAAGATGGAAGGGGATAA

CircID chr19:40944915|40945071
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MPRCAFGNVIFFLKPPYRVVVKMEGDKAGEAIGIY
Nucleotide Sequence TTGCCCAGATGTGCCTTTGGGAATGTCATCTTCTTTCTCAAGCCTCCTTACAGGGTTGTAGTGAAGATGGAAGGGGATAAGGCAGGTGAAGCAATTGGAATATATTAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites